Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0002947

Physical Location & Seq

Genomic Coordinates Forward (+)

4761382 .. 4762486

Gene Structure 1105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g07970.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGTATCAGCAGACGACTTGGTGATCATCTTCCGCCAGCAACCAGGGTTTCGATTCCATCCCACCCAAGAGGAACTCGTCCTCTACTATCTGAAACGAAAGATCTGCCACAAAACGTTCAAGCTCAACATCATCACCGAAACCGACGTCTACAAATGCGAGCCGGAGGAGCTTCCCGGTTTGTCTTTATTACAAACCGGAGACCGGCAATGGTTCTTTTTCAGCCCCATAAATTGCAAGTACCCTAAAAAATCGACAAGAATGAACAGAGTGACCAGACTCGGCTACTGGAAAGTTACAGGAAAAGATCAAACGGTTATACATAATTCACGTCCAGTTGGAGTAAAGAAAACCCTAATTTTCTATAAAGGCCGTGCGCCGAGGGGGAATCGAACTGATTGGGTGATGCATGAGTATACTTTGCACGATGAGGAGCTGAAGAGATGTGGGAATGTGCCGGATCCTTATGCTCTTTGCAAGGTTTACAAGAAAAGTGGACTGGGGCCGAAAACCGGTGAGCACTATTGGGCTCCGTTTCAGGAGGAAGACTGCTCTGATATGGATGAAGTAGTCCAAGAAACCCCAGTGAAGAAAATTGAGGATCAGATTAGAGTTACTCCAGGCGTTAATAGTTACAGTGAAAGTTATGAAATCCAACATTCTTCGTTTGATGAGGACATGGAGGAGTTCATGAAAAGGATTGCTGGTGAGGCTGAGCAAGACATGTATTATGAAGCAAGCATGTTTCTACAAGACTTGAGGCCTAGGTTTGATGAACATCTATGTATGGATCCAGAGCTGGACGCGGGTAATTATATTGACCATGATCAGCTGAACGCAGAAGAATCAAGTCAGTTTCACAATCAGGATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

292

Amino Acids

34.24

Weight (kDa)

5.31

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	15 - 141	1.7e-41	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34180 AT1G34180 AT1G34180 AT1G34180 AT1G34190
fragaria_vesca	FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_6g07970
malus_domestica	MD05G1037700.v1.1 MD10G1041500.v1.1
prunus_persica	Prupe.8G045800_v2.0.a1 Prupe.8G045800_v2.0.a1
pyrus_communis	pycom05g02790 pycom10g02860
rosa_chinensis	RchiOBHm_Chr3g0457681 RchiOBHm_Chr6g0273431
rosa_laevigata	RLG00000013619 RLG00000025196
rosa_multiflora	Rmu_co8212274.1_g000001 Rmu_sc0005891.1_g000016 Rmu_sc0007395.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421580 Rroxscaffold_7G00195380
rosa_rugosa	Rorug03G0022500 Rorug06G0074700
rosa_samantha	Rh3AG083200 Rh3BG085700 Rh3CG086000 Rh3DG086600 Rh6AG189800 Rh6BG193300 Rh6CG193000 Rh6DG184500
rosa_wichuraiana	Rw3G007120 Rw6G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
AccI	GTMKAC	2 cut(s)	150, 416
AccII	CGCG	1 cut(s)	806
AciI	CCGC	2 cut(s)	34, 806
AclI	AACGTT	1 cut(s)	116
AclWI	GGATC	5 cut(s)	455, 468, 609, 785, 798
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	1 cut(s)	147
AfaI	GTAC	1 cut(s)	242
AfiI	CCNNNNNNNGG	2 cut(s)	204, 512
AflIII	ACRYGT	1 cut(s)	723
AgeI	ACCGGT	1 cut(s)	512
AgsI	TTSAA	1 cut(s)	121
AjiI	CACGTC	1 cut(s)	332
AjnI	CCWGG	2 cut(s)	43, 619
AluBI	AGCT	5 cut(s)	124, 172, 436, 799, 832
AluI	AGCT	5 cut(s)	124, 172, 436, 799, 832
Alw21I	GWGCWC	1 cut(s)	522
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	5 cut(s)	455, 468, 609, 785, 798
AoxI	GGCC	3 cut(s)	370, 503, 761
ArsI	GACNNNNNNTTYG	2 cut(s)	132, 164
AsiGI	ACCGGT	1 cut(s)	512
AspA2I	CCTAGG	1 cut(s)	764
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	1 cut(s)	503
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	5 cut(s)	34, 127, 415, 527, 719
AvrII	CCTAGG	1 cut(s)	764
BamHI	GGATCC	2 cut(s)	460, 790
BanII	GRGCYC	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	552
Bbv12I	GWGCWC	1 cut(s)	522
BccI	CCATC	1 cut(s)	66
BceAI	ACGGC	1 cut(s)	357
BcgI	CGANNNNNNTGC	2 cut(s)	87, 121
BciT130I	CCWGG	2 cut(s)	45, 621
BclI	TGATCA	2 cut(s)	24, 826
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	1 cut(s)	765
BglII	AGATCT	1 cut(s)	102
BlnI	CCTAGG	1 cut(s)	764
BlpI	GCTNAGC	1 cut(s)	714
Bme1390I	CCNGG	3 cut(s)	45, 177, 621
BmgBI	CACGTC	1 cut(s)	332
BmgT120I	GGNCC	1 cut(s)	503
BmiI	GGNNCC	4 cut(s)	462, 504, 531, 792
BmrFI	CCNGG	3 cut(s)	45, 177, 621
BmrI	ACTGGG	2 cut(s)	509, 578
BmsI	GCATC	1 cut(s)	396
BmuI	ACTGGG	2 cut(s)	509, 578
BpiI	GAAGAC	1 cut(s)	552
BpmI	CTGGAG	1 cut(s)	603
Bpu1102I	GCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	1 cut(s)	778
BpuMI	CCSGG	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	777
BsaHI	GRCGYC	1 cut(s)	147
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	3 cut(s)	44, 380, 764
BsaWI	WCCGGW	2 cut(s)	197, 512
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 512
Bse118I	RCCGGY	2 cut(s)	204, 512
Bse1I	ACTGG	4 cut(s)	293, 335, 504, 584
Bse3DI	GCAATG	1 cut(s)	215
Bse8I	GATNNNNATC	1 cut(s)	777
BseBI	CCWGG	2 cut(s)	45, 621
BseDI	CCNNGG	3 cut(s)	44, 380, 764
BseGI	GGATG	3 cut(s)	58, 568, 874
BseJI	GATNNNNATC	1 cut(s)	777
BseLI	CCNNNNNNNGG	2 cut(s)	204, 512
BseMI	GCAATG	1 cut(s)	215
BseMII	CTCAG	1 cut(s)	705
BseNI	ACTGG	4 cut(s)	293, 335, 504, 584
BseRI	GAGGAG	3 cut(s)	182, 446, 698
Bsh1236I	CGCG	1 cut(s)	806
BshFI	GGCC	3 cut(s)	372, 505, 763
BshTI	ACCGGT	1 cut(s)	512
BsiHKAI	GWGCWC	1 cut(s)	522
BsiSI	CCGG	6 cut(s)	164, 177, 198, 205, 458, 513
BslI	CCNNNNNNNGG	2 cut(s)	204, 512
BsmAI	GTCTC	1 cut(s)	195
BsnI	GGCC	3 cut(s)	372, 505, 763
Bso31I	GGTCTC	1 cut(s)	195
Bsp1286I	GDGCHC	2 cut(s)	522, 532
Bsp143I	GATC	7 cut(s)	24, 102, 307, 460, 601, 790, 826
Bsp1720I	GCTNAGC	1 cut(s)	714
BspACI	CCGC	2 cut(s)	34, 806
BspANI	GGCC	3 cut(s)	372, 505, 763
BspCNI	CTCAG	1 cut(s)	706
BspFNI	CGCG	1 cut(s)	806
BspHI	TCATGA	1 cut(s)	690
BspLI	GGNNCC	4 cut(s)	462, 504, 531, 792
BspPI	GGATC	5 cut(s)	455, 468, 609, 785, 798
BspTNI	GGTCTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	215
BsrFI	RCCGGY	2 cut(s)	204, 512
BsrI	ACTGG	4 cut(s)	293, 335, 504, 584
BssAI	RCCGGY	2 cut(s)	204, 512
BssECI	CCNNGG	3 cut(s)	44, 380, 764
BssMI	GATC	7 cut(s)	24, 102, 307, 460, 601, 790, 826
BssNAI	GTATAC	1 cut(s)	417
BssNI	GRCGYC	1 cut(s)	147
BssT1I	CCWWGG	1 cut(s)	764
Bst1107I	GTATAC	1 cut(s)	417
Bst2UI	CCWGG	2 cut(s)	45, 621
Bst4CI	ACNGT	2 cut(s)	316, 638
Bst6I	CTCTTC	1 cut(s)	434
BstACI	GRCGYC	1 cut(s)	147
BstC8I	GCNNGC	3 cut(s)	38, 161, 739
BstDEI	CTNAG	1 cut(s)	714
BstF5I	GGATG	3 cut(s)	58, 568, 874
BstFNI	CGCG	1 cut(s)	806
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	7 cut(s)	27, 105, 310, 463, 604, 793, 829
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	7 cut(s)	24, 102, 307, 460, 601, 790, 826
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 710
BstNI	CCWGG	2 cut(s)	45, 621
BstNSI	RCATGY	2 cut(s)	727, 745
BstSCI	CCNGG	3 cut(s)	43, 175, 619
BstUI	CGCG	1 cut(s)	806
BstV2I	GAAGAC	1 cut(s)	552
BstX2I	RGATCY	3 cut(s)	102, 460, 790
BstYI	RGATCY	3 cut(s)	102, 460, 790
BstZ17I	GTATAC	1 cut(s)	417
BsuRI	GGCC	3 cut(s)	372, 505, 763
BtrI	CACGTC	1 cut(s)	332
BtsCI	GGATG	3 cut(s)	58, 568, 874
BtsIMutI	CAGTG	2 cut(s)	591, 643
Cac8I	GCNNGC	3 cut(s)	38, 161, 739
CciI	TCATGA	1 cut(s)	690
CfoI	GCGC	1 cut(s)	379
Cfr10I	RCCGGY	2 cut(s)	204, 512
Cfr13I	GGNCC	1 cut(s)	503
CseI	GACGC	1 cut(s)	812
Csp6I	GTAC	1 cut(s)	241
CspAI	ACCGGT	1 cut(s)	512
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CviAII	CATG	6 cut(s)	410, 679, 691, 724, 742, 824
CviQI	GTAC	1 cut(s)	241
DdeI	CTNAG	1 cut(s)	714
DpnI	GATC	7 cut(s)	26, 104, 309, 462, 603, 792, 828
DpnII	GATC	7 cut(s)	24, 102, 307, 460, 601, 790, 826
Eam1104I	CTCTTC	1 cut(s)	434
EarI	CTCTTC	1 cut(s)	434
EciI	GGCGGA	1 cut(s)	23
Eco130I	CCWWGG	1 cut(s)	764
Eco147I	AGGCCT	1 cut(s)	763
Eco24I	GRGCYC	1 cut(s)	532
Eco31I	GGTCTC	1 cut(s)	195
Eco57I	CTGAAG	1 cut(s)	458
EcoRII	CCWGG	2 cut(s)	43, 619
EcoT14I	CCWWGG	1 cut(s)	764
EcoT22I	ATGCAT	1 cut(s)	411
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	1 cut(s)	764
FaeI	CATG	6 cut(s)	413, 682, 694, 727, 745, 827
FatI	CATG	6 cut(s)	409, 678, 690, 723, 741, 823
FauI	CCCGC	1 cut(s)	799
FbaI	TGATCA	2 cut(s)	24, 826
FblI	GTMKAC	2 cut(s)	150, 416
FokI	GGATG	2 cut(s)	45, 575
FriOI	GRGCYC	1 cut(s)	532
FspBI	CTAG	1 cut(s)	765
GlaI	GCGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	603
HaeIII	GGCC	3 cut(s)	372, 505, 763
HapII	CCGG	6 cut(s)	164, 177, 198, 205, 458, 513
HgaI	GACGC	1 cut(s)	812
HhaI	GCGC	1 cut(s)	379
Hin1I	GRCGYC	1 cut(s)	147
Hin1II	CATG	6 cut(s)	413, 682, 694, 727, 745, 827
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HinfI	GANTC	4 cut(s)	54, 279, 388, 845
HpaII	CCGG	6 cut(s)	164, 177, 198, 205, 458, 513
HphI	GGTGA	5 cut(s)	34, 127, 415, 527, 719
Hpy166II	GTNNAC	4 cut(s)	151, 417, 484, 497
Hpy188I	TCNGA	3 cut(s)	93, 556, 606
Hpy188III	TCNNGA	4 cut(s)	539, 691, 794, 866
Hpy8I	GTNNAC	4 cut(s)	151, 417, 484, 497
Hpy99I	CGWCG	1 cut(s)	149
HpyCH4III	ACNGT	2 cut(s)	316, 638
HpyCH4IV	ACGT	3 cut(s)	116, 147, 331
HpyCH4V	TGCA	4 cut(s)	237, 409, 424, 477
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 710
HpyF3I	CTNAG	1 cut(s)	714
HpySE526I	ACGT	3 cut(s)	116, 147, 331
Hsp92I	GRCGYC	1 cut(s)	147
Hsp92II	CATG	6 cut(s)	413, 682, 694, 727, 745, 827
HspAI	GCGC	1 cut(s)	377
Ksp22I	TGATCA	2 cut(s)	24, 826
Kzo9I	GATC	7 cut(s)	24, 102, 307, 460, 601, 790, 826
LmnI	GCTCC	3 cut(s)	169, 433, 535
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	1 cut(s)	765
MaeII	ACGT	3 cut(s)	116, 147, 331
MaeIII	GTNAC	4 cut(s)	271, 295, 613, 632
MalI	GATC	7 cut(s)	26, 104, 309, 462, 603, 792, 828
MboI	GATC	7 cut(s)	24, 102, 307, 460, 601, 790, 826
MboII	GAAGA	6 cut(s)	22, 451, 557, 601, 654, 854
MflI	RGATCY	3 cut(s)	102, 460, 790
MhlI	GDGCHC	2 cut(s)	522, 532
MluCI	AATT	5 cut(s)	232, 325, 357, 594, 811
MlyI	GAGTC	1 cut(s)	273
MmeI	TCCRAC	2 cut(s)	319, 679
Mph1103I	ATGCAT	1 cut(s)	411
MseI	TTAA	1 cut(s)	627
MspA1I	CMGCKG	1 cut(s)	832
MspI	CCGG	6 cut(s)	164, 177, 198, 205, 458, 513
MspR9I	CCNGG	3 cut(s)	45, 177, 621
MvaI	CCWGG	2 cut(s)	45, 621
MvnI	CGCG	1 cut(s)	806
MwoI	GCNNNNNNNGC	2 cut(s)	169, 710
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	7 cut(s)	24, 102, 307, 460, 601, 790, 826
NlaIII	CATG	6 cut(s)	413, 682, 694, 727, 745, 827
NlaIV	GGNNCC	4 cut(s)	462, 504, 531, 792
NmeAIII	GCCGAG	2 cut(s)	261, 405
NmuCI	GTSAC	1 cut(s)	271
NsiI	ATGCAT	1 cut(s)	411
NspI	RCATGY	2 cut(s)	727, 745
PagI	TCATGA	1 cut(s)	690
PceI	AGGCCT	1 cut(s)	763
PciI	ACATGT	1 cut(s)	723
PfeI	GAWTC	3 cut(s)	54, 388, 845
PinAI	ACCGGT	1 cut(s)	512
PleI	GAGTC	1 cut(s)	273
PpsI	GAGTC	1 cut(s)	273
PscI	ACATGT	1 cut(s)	723
Psp1406I	AACGTT	1 cut(s)	116
Psp6I	CCWGG	2 cut(s)	43, 619
PspGI	CCWGG	2 cut(s)	43, 619
PspN4I	GGNNCC	4 cut(s)	462, 504, 531, 792
PspPI	GGNCC	1 cut(s)	503
PsuI	RGATCY	3 cut(s)	102, 460, 790
PvuII	CAGCTG	1 cut(s)	832
RsaI	GTAC	1 cut(s)	242
RsaNI	GTAC	1 cut(s)	241
SaqAI	TTAA	1 cut(s)	627
Sau3AI	GATC	7 cut(s)	24, 102, 307, 460, 601, 790, 826
Sau96I	GGNCC	1 cut(s)	503
SchI	GAGTC	1 cut(s)	273
ScrFI	CCNGG	3 cut(s)	45, 177, 621
SduI	GDGCHC	2 cut(s)	522, 532
SfaNI	GCATC	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	757
SmoI	CTYRAG	1 cut(s)	757
Sse9I	AATT	5 cut(s)	232, 325, 357, 594, 811
SseBI	AGGCCT	1 cut(s)	763
SsiI	CCGC	2 cut(s)	34, 806
SspMI	CTAG	1 cut(s)	765
StuI	AGGCCT	1 cut(s)	763
StyD4I	CCNGG	3 cut(s)	43, 175, 619
StyI	CCWWGG	1 cut(s)	764
TaaI	ACNGT	2 cut(s)	316, 638
TaiI	ACGT	3 cut(s)	119, 150, 334
TaqI	TCGA	3 cut(s)	52, 254, 391
TasI	AATT	5 cut(s)	232, 325, 357, 594, 811
TfiI	GAWTC	3 cut(s)	54, 388, 845
Tru1I	TTAA	1 cut(s)	627
Tru9I	TTAA	1 cut(s)	627
TscAI	CASTG	2 cut(s)	591, 643
TseFI	GTSAC	1 cut(s)	271
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	7 cut(s)	278, 579, 663, 679, 707, 747, 789
TspGWI	ACGGA	1 cut(s)	522
TspRI	CASTG	2 cut(s)	591, 643
XceI	RCATGY	2 cut(s)	727, 745
XmaJI	CCTAGG	1 cut(s)	764
XmiI	GTMKAC	2 cut(s)	150, 416
XspI	CTAG	1 cut(s)	765
ZraI	GACGTC	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.