Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0002947

Physical Location & Seq

Genomic Coordinates Reverse (-)

42703616 .. 42704512

Gene Structure 897 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00421580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGATGGTATCAGCAGACGACTTGGTGATCGTCTTTCGCCAGCAACCAGGGTTCCGGTTCCATCCCACCGAAGAGGAACTCGTCCTCTACTATCTGAAACGAAAAATCTGCCACAAAAGGTTCAAGCTCAACATCATCACTGAAACCGACGTCTACAAGTGCGAGCCAGGGGAGCTTCCCGGTTTGTCTTTATTACAAACCGGAGACCGGCAATGGTTCTTTTTCAGCCCCAGAGATTGCAAGTACCCTAACAAACCTACAAGAATAAACAGGGCGACCAGACATGGCTACTGGAAAGTTACAGGAAAAGATCGCACGATTACGAATAATTCACGGTCTGTTGGAGTAAAGAAAACTCTAGTTTTCTATACAGGCCGTGCGGCTAGTGGGAATCGCACTGACTGGGTGATGCATGAGTATACTTTGCACGATGAGGAGCTGAAGAGATGTGGGAATGTACCGGAGGCTTATGCTCTTTGCAAGGTTTACAAGAAAACTGGACTGGGTCCAAAAAACGGTGAGCAATATGGGGCGCCGTTTAAGGAGGAAGACTGCTCTGATAAGGATGAACTCCAAGAAACCCCAGTGAAGCAAATTGAAAATCAGATTAGTAGGGCGAAAGGAGGAGTTAATCCAGTCATTAACAGTTACAGTGATAGTTATGAAATCCCACATCCTTCTTCGTTTGATAGGGACATGGAGGAGTTCATGAAAAAGATTGCTGGTGAGGCTGAGCATGACATGTATCATGAAGCAGGCATGTTTCTACATGACTTGAGGCCTAATTTTGATCAACATCAATATATGGATCCAGAGCTGGACTGGGGTAATTATATTGACCATGATCAGCTGAACTCAGAAGAATCAAGTCAATTTAAGAATCGGCATGAATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

298

Amino Acids

34.88

Weight (kDa)

6.08

Isoelectric Point (pI)

43.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	16 - 142	6.5e-44	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34180 AT1G34180 AT1G34180 AT1G34180 AT1G34190
fragaria_vesca	FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_6g07970
malus_domestica	MD05G1037700.v1.1 MD10G1041500.v1.1
prunus_persica	Prupe.8G045800_v2.0.a1 Prupe.8G045800_v2.0.a1
pyrus_communis	pycom05g02790 pycom10g02860
rosa_chinensis	RchiOBHm_Chr3g0457681 RchiOBHm_Chr6g0273431
rosa_laevigata	RLG00000013619 RLG00000025196
rosa_multiflora	Rmu_co8212274.1_g000001 Rmu_sc0005891.1_g000016 Rmu_sc0007395.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421580 Rroxscaffold_7G00195380
rosa_rugosa	Rorug03G0022500 Rorug06G0074700
rosa_samantha	Rh3AG083200 Rh3BG085700 Rh3CG086000 Rh3DG086600 Rh6AG189800 Rh6BG193300 Rh6CG193000 Rh6DG184500
rosa_wichuraiana	Rw3G007120 Rw6G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
AccB1I	GGYRCC	1 cut(s)	532
AccI	GTMKAC	2 cut(s)	153, 419
AciI	CCGC	1 cut(s)	380
AclWI	GGATC	2 cut(s)	803, 816
AcuI	CTGAAG	1 cut(s)	461
AcyI	GRCGYC	2 cut(s)	150, 533
AfaI	GTAC	2 cut(s)	245, 459
AfiI	CCNNNNNNNGG	2 cut(s)	207, 515
AflIII	ACRYGT	1 cut(s)	741
AgsI	TTSAA	2 cut(s)	124, 599
AjnI	CCWGG	2 cut(s)	46, 166
AluBI	AGCT	5 cut(s)	127, 175, 439, 817, 850
AluI	AGCT	5 cut(s)	127, 175, 439, 817, 850
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	2 cut(s)	803, 816
AoxI	GGCC	2 cut(s)	373, 779
AspLEI	GCGC	1 cut(s)	535
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	4 cut(s)	37, 418, 530, 737
AvaII	GGWCC	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	808
BanI	GGYRCC	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	555
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	2 cut(s)	360, 520
BcgI	CGANNNNNNTGC	2 cut(s)	90, 124
BciT130I	CCWGG	2 cut(s)	48, 168
BclI	TGATCA	2 cut(s)	790, 844
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	2 cut(s)	359, 384
BfoI	RGCGCY	1 cut(s)	536
BisI	GCNGC	1 cut(s)	381
BlpI	GCTNAGC	1 cut(s)	732
BlsI	GCNGC	1 cut(s)	382
Bme1390I	CCNGG	3 cut(s)	48, 168, 180
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	5 cut(s)	53, 59, 507, 534, 810
BmrFI	CCNGG	3 cut(s)	48, 168, 180
BmrI	ACTGGG	4 cut(s)	412, 512, 578, 832
BmsI	GCATC	1 cut(s)	399
BmuI	ACTGGG	4 cut(s)	412, 512, 578, 832
BpiI	GAAGAC	1 cut(s)	555
Bpu1102I	GCTNAGC	1 cut(s)	732
BpuEI	CTTGAG	1 cut(s)	796
BpuMI	CCSGG	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	795
BsaHI	GRCGYC	2 cut(s)	150, 533
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	2 cut(s)	47, 167
BsaWI	WCCGGW	3 cut(s)	54, 200, 460
Bsc4I	CCNNNNNNNGG	2 cut(s)	207, 515
Bse118I	RCCGGY	1 cut(s)	207
Bse1I	ACTGG	7 cut(s)	296, 407, 502, 507, 584, 635, 827
Bse3DI	GCAATG	1 cut(s)	218
Bse8I	GATNNNNATC	1 cut(s)	795
BseBI	CCWGG	2 cut(s)	48, 168
BseDI	CCNNGG	2 cut(s)	47, 167
BseGI	GGATG	3 cut(s)	61, 571, 673
BseJI	GATNNNNATC	1 cut(s)	795
BseLI	CCNNNNNNNGG	2 cut(s)	207, 515
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	2 cut(s)	723, 870
BseNI	ACTGG	7 cut(s)	296, 407, 502, 507, 584, 635, 827
BseRI	GAGGAG	3 cut(s)	449, 639, 716
BshFI	GGCC	2 cut(s)	375, 781
BshNI	GGYRCC	1 cut(s)	532
BsiSI	CCGG	5 cut(s)	55, 180, 201, 208, 461
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	2 cut(s)	207, 515
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	707
BsnI	GGCC	2 cut(s)	375, 781
Bso31I	GGTCTC	1 cut(s)	198
Bsp143I	GATC	5 cut(s)	27, 310, 790, 808, 844
Bsp1720I	GCTNAGC	1 cut(s)	732
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	2 cut(s)	375, 781
BspCNI	CTCAG	2 cut(s)	724, 869
BspHI	TCATGA	2 cut(s)	708, 748
BspLI	GGNNCC	5 cut(s)	53, 59, 507, 534, 810
BspPI	GGATC	2 cut(s)	803, 816
BspT107I	GGYRCC	1 cut(s)	532
BspTNI	GGTCTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	218
BsrFI	RCCGGY	1 cut(s)	207
BsrI	ACTGG	7 cut(s)	296, 407, 502, 507, 584, 635, 827
BssAI	RCCGGY	1 cut(s)	207
BssECI	CCNNGG	2 cut(s)	47, 167
BssMI	GATC	5 cut(s)	27, 310, 790, 808, 844
BssNAI	GTATAC	1 cut(s)	420
BssNI	GRCGYC	2 cut(s)	150, 533
Bst1107I	GTATAC	1 cut(s)	420
Bst2UI	CCWGG	2 cut(s)	48, 168
Bst4CI	ACNGT	4 cut(s)	336, 518, 647, 653
Bst6I	CTCTTC	2 cut(s)	66, 437
BstACI	GRCGYC	2 cut(s)	150, 533
BstC8I	GCNNGC	3 cut(s)	41, 164, 757
BstDEI	CTNAG	2 cut(s)	732, 856
BstF5I	GGATG	3 cut(s)	61, 571, 673
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	1 cut(s)	535
BstKTI	GATC	5 cut(s)	30, 313, 793, 811, 847
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	5 cut(s)	27, 310, 790, 808, 844
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 728
BstNI	CCWGG	2 cut(s)	48, 168
BstNSI	RCATGY	2 cut(s)	745, 763
BstSCI	CCNGG	3 cut(s)	46, 166, 178
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	808
BstYI	RGATCY	1 cut(s)	808
BstZ17I	GTATAC	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	375, 781
BtsCI	GGATG	3 cut(s)	61, 571, 673
BtsIMutI	CAGTG	4 cut(s)	138, 396, 591, 658
Cac8I	GCNNGC	3 cut(s)	41, 164, 757
CciI	TCATGA	2 cut(s)	708, 748
CfoI	GCGC	1 cut(s)	535
Cfr10I	RCCGGY	1 cut(s)	207
Cfr13I	GGNCC	1 cut(s)	506
Csp6I	GTAC	2 cut(s)	244, 458
CviQI	GTAC	2 cut(s)	244, 458
DdeI	CTNAG	2 cut(s)	732, 856
DinI	GGCGCC	1 cut(s)	534
DpnI	GATC	5 cut(s)	29, 312, 792, 810, 846
DpnII	GATC	5 cut(s)	27, 310, 790, 808, 844
Eam1104I	CTCTTC	2 cut(s)	66, 437
EarI	CTCTTC	2 cut(s)	66, 437
Eco147I	AGGCCT	1 cut(s)	781
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	506
Eco57I	CTGAAG	1 cut(s)	461
EcoRII	CCWGG	2 cut(s)	46, 166
EcoT22I	ATGCAT	1 cut(s)	414
EgeI	GGCGCC	1 cut(s)	534
EheI	GGCGCC	1 cut(s)	534
FaqI	GGGAC	1 cut(s)	707
FbaI	TGATCA	2 cut(s)	790, 844
FblI	GTMKAC	2 cut(s)	153, 419
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	3 cut(s)	48, 578, 660
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	2 cut(s)	359, 384
GlaI	GCGC	1 cut(s)	534
GluI	GCNGC	1 cut(s)	381
HaeII	RGCGCY	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	375, 781
HapII	CCGG	5 cut(s)	55, 180, 201, 208, 461
HhaI	GCGC	1 cut(s)	535
Hin1I	GRCGYC	2 cut(s)	150, 533
Hin6I	GCGC	1 cut(s)	533
HinP1I	GCGC	1 cut(s)	533
HinfI	GANTC	3 cut(s)	391, 863, 880
HpaII	CCGG	5 cut(s)	55, 180, 201, 208, 461
HphI	GGTGA	4 cut(s)	37, 418, 530, 737
Hpy166II	GTNNAC	3 cut(s)	154, 420, 487
Hpy188I	TCNGA	4 cut(s)	96, 559, 606, 859
Hpy188III	TCNNGA	3 cut(s)	709, 749, 812
Hpy8I	GTNNAC	3 cut(s)	154, 420, 487
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	687
HpyCH4III	ACNGT	4 cut(s)	336, 518, 647, 653
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	4 cut(s)	240, 412, 427, 480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 728
HpyF3I	CTNAG	2 cut(s)	732, 856
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	2 cut(s)	150, 533
HspAI	GCGC	1 cut(s)	533
KasI	GGCGCC	1 cut(s)	532
Ksp22I	TGATCA	2 cut(s)	790, 844
Kzo9I	GATC	5 cut(s)	27, 310, 790, 808, 844
LmnI	GCTCC	2 cut(s)	172, 436
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	2 cut(s)	359, 384
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	2 cut(s)	298, 647
MalI	GATC	5 cut(s)	29, 312, 792, 810, 846
MboI	GATC	5 cut(s)	27, 310, 790, 808, 844
MboII	GAAGA	5 cut(s)	83, 454, 560, 672, 872
MflI	RGATCY	1 cut(s)	808
MluCI	AATT	5 cut(s)	328, 594, 784, 829, 872
Mly113I	GGCGCC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	9 cut(s)	67, 95, 427, 457, 538, 617, 694, 721, 771
Mph1103I	ATGCAT	1 cut(s)	414
MseI	TTAA	4 cut(s)	540, 630, 642, 876
MspA1I	CMGCKG	1 cut(s)	850
MspI	CCGG	5 cut(s)	55, 180, 201, 208, 461
MspR9I	CCNGG	3 cut(s)	48, 168, 180
MvaI	CCWGG	2 cut(s)	48, 168
MwoI	GCNNNNNNNGC	2 cut(s)	172, 728
NarI	GGCGCC	1 cut(s)	533
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	5 cut(s)	27, 310, 790, 808, 844
NlaIV	GGNNCC	5 cut(s)	53, 59, 507, 534, 810
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	2 cut(s)	745, 763
PagI	TCATGA	2 cut(s)	708, 748
PceI	AGGCCT	1 cut(s)	781
PciI	ACATGT	1 cut(s)	741
PfeI	GAWTC	3 cut(s)	391, 863, 880
PflFI	GACNNNGTC	1 cut(s)	504
PkrI	GCNGC	1 cut(s)	382
PluTI	GGCGCC	1 cut(s)	536
PscI	ACATGT	1 cut(s)	741
Psp6I	CCWGG	2 cut(s)	46, 166
PspGI	CCWGG	2 cut(s)	46, 166
PspN4I	GGNNCC	5 cut(s)	53, 59, 507, 534, 810
PspPI	GGNCC	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	808
PsyI	GACNNNGTC	1 cut(s)	504
PvuII	CAGCTG	1 cut(s)	850
RsaI	GTAC	2 cut(s)	245, 459
RsaNI	GTAC	2 cut(s)	244, 458
SaqAI	TTAA	4 cut(s)	540, 630, 642, 876
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	5 cut(s)	27, 310, 790, 808, 844
Sau96I	GGNCC	1 cut(s)	506
ScrFI	CCNGG	3 cut(s)	48, 168, 180
SetI	ASST	9 cut(s)	122, 129, 153, 177, 259, 441, 486, 819, 852
SfaNI	GCATC	1 cut(s)	399
SfoI	GGCGCC	1 cut(s)	534
SinI	GGWCC	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	775
SmoI	CTYRAG	1 cut(s)	775
Sse9I	AATT	5 cut(s)	328, 594, 784, 829, 872
SseBI	AGGCCT	1 cut(s)	781
SsiI	CCGC	1 cut(s)	380
SspDI	GGCGCC	1 cut(s)	532
SspMI	CTAG	2 cut(s)	359, 384
StuI	AGGCCT	1 cut(s)	781
StyD4I	CCNGG	3 cut(s)	46, 166, 178
TaaI	ACNGT	4 cut(s)	336, 518, 647, 653
TaiI	ACGT	1 cut(s)	153
TasI	AATT	5 cut(s)	328, 594, 784, 829, 872
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	3 cut(s)	391, 863, 880
Tru1I	TTAA	4 cut(s)	540, 630, 642, 876
Tru9I	TTAA	4 cut(s)	540, 630, 642, 876
TscAI	CASTG	4 cut(s)	145, 403, 591, 658
TspDTI	ATGAA	5 cut(s)	582, 678, 697, 725, 765
TspRI	CASTG	4 cut(s)	145, 403, 591, 658
Tth111I	GACNNNGTC	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	506
XceI	RCATGY	2 cut(s)	745, 763
XcmI	CCANNNNNNNNNTGG	1 cut(s)	819
XmiI	GTMKAC	2 cut(s)	153, 419
XspI	CTAG	2 cut(s)	359, 384
ZraI	GACGTC	1 cut(s)	151
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.