Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002947

Physical Location & Seq

Genomic Coordinates Reverse (-)

9912336 .. 9912743

Gene Structure 408 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0074700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGAAGGTAAGGGACTGATTATAAGAGATTGGGCTCCTCAAGTGCTGATTCTTGAGCATGAAGCAGTAGGAGCTTTTCTTTATCATTGTGGGTGGAACTCATTCCTTGAAGGAGTCTCTATACTCCGTGTCGGGGTTGCTGTTGGTGCTGAAAAATGGGTTTCATTTGTGGATGAAAGTTTGAAGAGCGAGGCCCGTGTGAAGAGGGAGGCCATTGGGAGGGCTATGACAAGAATCATGGTGGGTGATGATGCAGAGGAAATGAGAAACAGAGTTAAAGTGCTTGGAGAGATGGTAAACAGGGCTGTTAAGAAGGTGGTTCATCTTTTTCAGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

112

Amino Acids

12.59

Weight (kDa)

7.92

Isoelectric Point (pI)

16.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UDPGT	PF00201	7 - 40	5.9e-06	UDP-glucoronosyl and UDP-glucosyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34180 AT1G34180 AT1G34180 AT1G34180 AT1G34190
fragaria_vesca	FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_6g07970
malus_domestica	MD05G1037700.v1.1 MD10G1041500.v1.1
prunus_persica	Prupe.8G045800_v2.0.a1 Prupe.8G045800_v2.0.a1
pyrus_communis	pycom05g02790 pycom10g02860
rosa_chinensis	RchiOBHm_Chr3g0457681 RchiOBHm_Chr6g0273431
rosa_laevigata	RLG00000013619 RLG00000025196
rosa_multiflora	Rmu_co8212274.1_g000001 Rmu_sc0005891.1_g000016 Rmu_sc0007395.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421580 Rroxscaffold_7G00195380
rosa_rugosa	Rorug03G0022500 Rorug06G0074700
rosa_samantha	Rh3AG083200 Rh3BG085700 Rh3CG086000 Rh3DG086600 Rh6AG189800 Rh6BG193300 Rh6CG193000 Rh6DG184500
rosa_wichuraiana	Rw3G007120 Rw6G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	133, 219
AgsI	TTSAA	2 cut(s)	110, 184
AluBI	AGCT	1 cut(s)	74
AluI	AGCT	1 cut(s)	74
Alw26I	GTCTC	1 cut(s)	121
AoxI	GGCC	2 cut(s)	192, 210
Asp700I	GAANNNNTTC	1 cut(s)	101
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	37
BccI	CCATC	1 cut(s)	286
BcoDI	GTCTC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	36
BmsI	GCATC	1 cut(s)	241
BpuEI	CTTGAG	2 cut(s)	24, 74
BsaXI	ACNNNNNCTCC	2 cut(s)	279, 309
Bsc4I	CCNNNNNNNGG	2 cut(s)	133, 219
BseGI	GGATG	1 cut(s)	178
BseLI	CCNNNNNNNGG	2 cut(s)	133, 219
BseRI	GAGGAG	1 cut(s)	27
BshFI	GGCC	2 cut(s)	194, 212
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	133, 219
BsmAI	GTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	27
BsnI	GGCC	2 cut(s)	194, 212
Bsp1286I	GDGCHC	1 cut(s)	37
BspANI	GGCC	2 cut(s)	194, 212
BspLI	GGNNCC	1 cut(s)	36
BspQI	GCTCTTC	1 cut(s)	179
Bst6I	CTCTTC	2 cut(s)	179, 197
BstF5I	GGATG	1 cut(s)	178
BstMAI	GTCTC	1 cut(s)	121
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 146
BsuRI	GGCC	2 cut(s)	194, 212
BtsCI	GGATG	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	193
CviAII	CATG	2 cut(s)	59, 238
CviJI	RGCY	6 cut(s)	35, 74, 194, 212, 224, 305
CviKI_1	RGCY	6 cut(s)	35, 74, 194, 212, 224, 305
Eam1104I	CTCTTC	2 cut(s)	179, 197
EarI	CTCTTC	2 cut(s)	179, 197
Eco24I	GRGCYC	1 cut(s)	37
EcoT38I	GRGCYC	1 cut(s)	37
FaeI	CATG	2 cut(s)	62, 241
FaiI	YATR	5 cut(s)	23, 60, 122, 227, 239
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	2 cut(s)	58, 237
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	37
HaeIII	GGCC	2 cut(s)	194, 212
Hin1II	CATG	2 cut(s)	62, 241
HinfI	GANTC	3 cut(s)	49, 114, 234
HphI	GGTGA	1 cut(s)	257
Hpy166II	GTNNAC	1 cut(s)	298
Hpy188I	TCNGA	1 cut(s)	333
Hpy188III	TCNNGA	1 cut(s)	53
Hpy8I	GTNNAC	1 cut(s)	298
HpyAV	CCTTC	2 cut(s)	104, 307
HpyCH4V	TGCA	1 cut(s)	254
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 146
Hsp92II	CATG	2 cut(s)	62, 241
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	2 cut(s)	40, 71
LpnPI	CCDG	1 cut(s)	286
LweI	GCATC	1 cut(s)	241
MboII	GAAGA	2 cut(s)	196, 214
MhlI	GDGCHC	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	123
MnlI	CCTC	6 cut(s)	48, 184, 198, 202, 213, 250
MroXI	GAANNNNTTC	1 cut(s)	101
MseI	TTAA	3 cut(s)	276, 309, 337
MwoI	GCNNNNNNNGC	2 cut(s)	71, 146
NlaIII	CATG	2 cut(s)	62, 241
NlaIV	GGNNCC	1 cut(s)	36
PciSI	GCTCTTC	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	101
PfeI	GAWTC	2 cut(s)	49, 234
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PsiI	TTATAA	1 cut(s)	23
PspN4I	GGNNCC	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	193
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	3 cut(s)	276, 309, 337
Sau96I	GGNCC	1 cut(s)	193
SchI	GAGTC	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	3 cut(s)	10, 76, 318
SfaNI	GCATC	1 cut(s)	241
SmlI	CTYRAG	2 cut(s)	39, 53
SmoI	CTYRAG	2 cut(s)	39, 53
TfiI	GAWTC	2 cut(s)	49, 234
Tru1I	TTAA	3 cut(s)	276, 309, 337
Tru9I	TTAA	3 cut(s)	276, 309, 337
TspDTI	ATGAA	4 cut(s)	75, 153, 189, 311
TspGWI	ACGGA	1 cut(s)	116
XmnI	GAANNNNTTC	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.