Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0002947

Physical Location & Seq

Genomic Coordinates Reverse (-)

42934517 .. 42935407

Gene Structure 891 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025196

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGTATCAGCAGACGACTTGGTGATCGTCTTTCGCCAGCAACCAGGGTTCCGATTCCATCCCACCGAAGAGGAACTCGTCCTCTACTATCTGAAACGAAAAATCTACCACAAAAGGTTCAAGCTCAACATCATTACTGAAACCGACGTCTACAAGTGCGAGCCGGAGGAGCTTCCCGGTTTGTCTTTATTACAAACCGGAGACCTGCAATGGTTCTTTTTCAACCCTAGAAATTGTAAGTACCCTAACAAACCTACAAGAATAAACAGGGCGACCAGACATGGCTACTGGAAAGTTACAGGAAAAGATCGCACGATTACGAATAATTCACGGTCGGTTGGAGTAAAGAAAACCCTAGTTTTCTATACAGGCCGTGCGCCTAGTGGGAATCGGACCGACTGGGTGATGCATGAGTATACTTTGCACGATGAGGAGCTGAAGAGATGTGGGAATGTACCGGATGCTTATGCTCTTTGCAAGGTTTACAAGAAAAGTGGACTGGGTCCAAAAAACGGTGAGCAATATGGGGCGCCGTTTAAGGAGGAAGACTGCTCTGATATGGATGAAGTCCAAGAAACCCCAGTGAAGCAAATTGAAAATCAGATTAGTAGGGCGAAAGGAGGAATTAATGCAGTCATTAACAGTTACAGTGATAGTTATGAAATCCCACATCCTTCTTCGTTTGATAGGGACATGGAGGAGTTCATGAAAAAGATTGCCAGTGAGGCTGAGCATGAGATGTATCATGAAGCAGGCATGTTTCTACATGACTTGAGGCCTAATTTTGATCAACATCTATATATGGATCCAGAGCTGCACTGGGGTAATTATATTGACCATGATCAGCTGAACTCAGAAGAATCAAGTCAATTTTACAATCAGCATGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

297

Amino Acids

34.71

Weight (kDa)

5.83

Isoelectric Point (pI)

45.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	15 - 141	2.9e-43	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34180 AT1G34180 AT1G34180 AT1G34180 AT1G34190
fragaria_vesca	FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_6g07970
malus_domestica	MD05G1037700.v1.1 MD10G1041500.v1.1
prunus_persica	Prupe.8G045800_v2.0.a1 Prupe.8G045800_v2.0.a1
pyrus_communis	pycom05g02790 pycom10g02860
rosa_chinensis	RchiOBHm_Chr3g0457681 RchiOBHm_Chr6g0273431
rosa_laevigata	RLG00000013619 RLG00000025196
rosa_multiflora	Rmu_co8212274.1_g000001 Rmu_sc0005891.1_g000016 Rmu_sc0007395.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421580 Rroxscaffold_7G00195380
rosa_rugosa	Rorug03G0022500 Rorug06G0074700
rosa_samantha	Rh3AG083200 Rh3BG085700 Rh3CG086000 Rh3DG086600 Rh6AG189800 Rh6BG193300 Rh6CG193000 Rh6DG184500
rosa_wichuraiana	Rw3G007120 Rw6G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	150
Acc36I	ACCTGC	1 cut(s)	213
AccB1I	GGYRCC	1 cut(s)	529
AccI	GTMKAC	2 cut(s)	150, 416
AclWI	GGATC	2 cut(s)	800, 813
AcuI	CTGAAG	1 cut(s)	458
AcyI	GRCGYC	2 cut(s)	147, 530
AfaI	GTAC	2 cut(s)	242, 456
AfiI	CCNNNNNNNGG	1 cut(s)	512
AgsI	TTSAA	3 cut(s)	121, 223, 596
AjnI	CCWGG	1 cut(s)	43
AluBI	AGCT	5 cut(s)	124, 172, 436, 814, 847
AluI	AGCT	5 cut(s)	124, 172, 436, 814, 847
Alw26I	GTCTC	1 cut(s)	195
AlwI	GGATC	2 cut(s)	800, 813
AoxI	GGCC	2 cut(s)	370, 776
ApeKI	GCWGC	1 cut(s)	814
AseI	ATTAAT	1 cut(s)	627
AspLEI	GCGC	2 cut(s)	379, 532
AspS9I	GGNCC	2 cut(s)	393, 503
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	3 cut(s)	34, 415, 527
AvaII	GGWCC	2 cut(s)	393, 503
BamHI	GGATCC	1 cut(s)	805
BanI	GGYRCC	1 cut(s)	529
BbsI	GAAGAC	1 cut(s)	552
BbvI	GCAGC	1 cut(s)	801
BccI	CCATC	1 cut(s)	66
BceAI	ACGGC	2 cut(s)	357, 517
BciT130I	CCWGG	1 cut(s)	45
BclI	TGATCA	2 cut(s)	787, 841
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	195
BfaI	CTAG	3 cut(s)	228, 356, 381
BfoI	RGCGCY	1 cut(s)	533
BfuAI	ACCTGC	1 cut(s)	213
BglI	GCCNNNNNGGC	1 cut(s)	725
BisI	GCNGC	1 cut(s)	815
BlpI	GCTNAGC	1 cut(s)	729
BlsI	GCNGC	1 cut(s)	816
Bme1390I	CCNGG	2 cut(s)	45, 177
Bme18I	GGWCC	2 cut(s)	393, 503
BmgT120I	GGNCC	2 cut(s)	393, 503
BmiI	GGNNCC	4 cut(s)	50, 504, 531, 807
BmrFI	CCNGG	2 cut(s)	45, 177
BmrI	ACTGGG	4 cut(s)	409, 509, 575, 829
BmsI	GCATC	2 cut(s)	396, 451
BmuI	ACTGGG	4 cut(s)	409, 509, 575, 829
BpiI	GAAGAC	1 cut(s)	552
Bpu1102I	GCTNAGC	1 cut(s)	729
BpuEI	CTTGAG	1 cut(s)	793
BpuMI	CCSGG	1 cut(s)	177
BsaBI	GATNNNNATC	1 cut(s)	792
BsaHI	GRCGYC	2 cut(s)	147, 530
BsaI	GGTCTC	1 cut(s)	195
BsaJI	CCNNGG	1 cut(s)	44
BsaWI	WCCGGW	2 cut(s)	197, 457
Bsc4I	CCNNNNNNNGG	1 cut(s)	512
Bse1I	ACTGG	6 cut(s)	293, 404, 504, 581, 720, 824
Bse3DI	GCAATG	1 cut(s)	215
Bse8I	GATNNNNATC	1 cut(s)	792
BseBI	CCWGG	1 cut(s)	45
BseDI	CCNNGG	1 cut(s)	44
BseGI	GGATG	4 cut(s)	58, 466, 568, 670
BseJI	GATNNNNATC	1 cut(s)	792
BseLI	CCNNNNNNNGG	1 cut(s)	512
BseMI	GCAATG	1 cut(s)	215
BseMII	CTCAG	2 cut(s)	720, 867
BseNI	ACTGG	6 cut(s)	293, 404, 504, 581, 720, 824
BseRI	GAGGAG	3 cut(s)	182, 446, 713
BseXI	GCAGC	1 cut(s)	801
BsgI	GTGCAG	1 cut(s)	800
Bsh1285I	CGRYCG	1 cut(s)	335
BshFI	GGCC	2 cut(s)	372, 778
BshNI	GGYRCC	1 cut(s)	529
BsiEI	CGRYCG	1 cut(s)	335
BsiSI	CCGG	4 cut(s)	164, 177, 198, 458
BslFI	GGGAC	1 cut(s)	704
BslI	CCNNNNNNNGG	1 cut(s)	512
BsmAI	GTCTC	1 cut(s)	195
BsmFI	GGGAC	1 cut(s)	704
BsnI	GGCC	2 cut(s)	372, 778
Bso31I	GGTCTC	1 cut(s)	195
Bsp143I	GATC	5 cut(s)	24, 307, 787, 805, 841
Bsp1720I	GCTNAGC	1 cut(s)	729
BspANI	GGCC	2 cut(s)	372, 778
BspCNI	CTCAG	2 cut(s)	721, 866
BspHI	TCATGA	2 cut(s)	705, 745
BspLI	GGNNCC	4 cut(s)	50, 504, 531, 807
BspMI	ACCTGC	1 cut(s)	213
BspPI	GGATC	2 cut(s)	800, 813
BspT107I	GGYRCC	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	195
BsrDI	GCAATG	1 cut(s)	215
BsrI	ACTGG	6 cut(s)	293, 404, 504, 581, 720, 824
BssECI	CCNNGG	1 cut(s)	44
BssMI	GATC	5 cut(s)	24, 307, 787, 805, 841
BssNAI	GTATAC	1 cut(s)	417
BssNI	GRCGYC	2 cut(s)	147, 530
Bst1107I	GTATAC	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	45
Bst4CI	ACNGT	4 cut(s)	333, 515, 644, 650
Bst6I	CTCTTC	2 cut(s)	63, 434
BstACI	GRCGYC	2 cut(s)	147, 530
BstC8I	GCNNGC	3 cut(s)	38, 161, 754
BstDEI	CTNAG	2 cut(s)	729, 853
BstF5I	GGATG	4 cut(s)	58, 466, 568, 670
BstH2I	RGCGCY	1 cut(s)	533
BstHHI	GCGC	2 cut(s)	379, 532
BstKTI	GATC	5 cut(s)	27, 310, 790, 808, 844
BstMAI	GTCTC	1 cut(s)	195
BstMBI	GATC	5 cut(s)	24, 307, 787, 805, 841
BstMCI	CGRYCG	1 cut(s)	335
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 725
BstNI	CCWGG	1 cut(s)	45
BstNSI	RCATGY	1 cut(s)	760
BstSCI	CCNGG	2 cut(s)	43, 175
BstV1I	GCAGC	1 cut(s)	801
BstV2I	GAAGAC	1 cut(s)	552
BstX2I	RGATCY	1 cut(s)	805
BstYI	RGATCY	1 cut(s)	805
BstZ17I	GTATAC	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	372, 778
BtsCI	GGATG	4 cut(s)	58, 466, 568, 670
BtsIMutI	CAGTG	4 cut(s)	588, 655, 727, 817
BveI	ACCTGC	1 cut(s)	213
Cac8I	GCNNGC	3 cut(s)	38, 161, 754
CciI	TCATGA	2 cut(s)	705, 745
CfoI	GCGC	2 cut(s)	379, 532
Cfr13I	GGNCC	2 cut(s)	393, 503
CpoI	CGGWCCG	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	241, 455
CspCI	CAANNNNNGTGG	2 cut(s)	475, 510
CspI	CGGWCCG	1 cut(s)	393
CviQI	GTAC	2 cut(s)	241, 455
DdeI	CTNAG	2 cut(s)	729, 853
DinI	GGCGCC	1 cut(s)	531
DpnI	GATC	5 cut(s)	26, 309, 789, 807, 843
DpnII	GATC	5 cut(s)	24, 307, 787, 805, 841
Eam1104I	CTCTTC	2 cut(s)	63, 434
EarI	CTCTTC	2 cut(s)	63, 434
Eco147I	AGGCCT	1 cut(s)	778
Eco31I	GGTCTC	1 cut(s)	195
Eco47I	GGWCC	2 cut(s)	393, 503
Eco57I	CTGAAG	1 cut(s)	458
EcoRII	CCWGG	1 cut(s)	43
EcoT22I	ATGCAT	1 cut(s)	411
EgeI	GGCGCC	1 cut(s)	531
EheI	GGCGCC	1 cut(s)	531
FaqI	GGGAC	1 cut(s)	704
FbaI	TGATCA	2 cut(s)	787, 841
FblI	GTMKAC	2 cut(s)	150, 416
Fnu4HI	GCNGC	1 cut(s)	815
FokI	GGATG	4 cut(s)	45, 473, 575, 657
Fsp4HI	GCNGC	1 cut(s)	815
FspBI	CTAG	3 cut(s)	228, 356, 381
GlaI	GCGC	2 cut(s)	378, 531
GluI	GCNGC	1 cut(s)	815
HaeII	RGCGCY	1 cut(s)	533
HaeIII	GGCC	2 cut(s)	372, 778
HapII	CCGG	4 cut(s)	164, 177, 198, 458
HhaI	GCGC	2 cut(s)	379, 532
Hin1I	GRCGYC	2 cut(s)	147, 530
Hin6I	GCGC	2 cut(s)	377, 530
HinP1I	GCGC	2 cut(s)	377, 530
HinfI	GANTC	3 cut(s)	54, 388, 860
HpaII	CCGG	4 cut(s)	164, 177, 198, 458
HphI	GGTGA	3 cut(s)	34, 415, 527
Hpy166II	GTNNAC	4 cut(s)	151, 417, 484, 497
Hpy188I	TCNGA	6 cut(s)	53, 93, 393, 556, 603, 856
Hpy188III	TCNNGA	3 cut(s)	706, 746, 809
Hpy8I	GTNNAC	4 cut(s)	151, 417, 484, 497
Hpy99I	CGWCG	1 cut(s)	149
HpyAV	CCTTC	1 cut(s)	684
HpyCH4III	ACNGT	4 cut(s)	333, 515, 644, 650
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	6 cut(s)	208, 409, 424, 477, 632, 817
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 725
HpyF3I	CTNAG	2 cut(s)	729, 853
HpySE526I	ACGT	1 cut(s)	147
Hsp92I	GRCGYC	2 cut(s)	147, 530
HspAI	GCGC	2 cut(s)	377, 530
KasI	GGCGCC	1 cut(s)	529
Ksp22I	TGATCA	2 cut(s)	787, 841
Kzo9I	GATC	5 cut(s)	24, 307, 787, 805, 841
LmnI	GCTCC	2 cut(s)	169, 433
Lsp1109I	GCAGC	1 cut(s)	801
LweI	GCATC	2 cut(s)	396, 451
MaeI	CTAG	3 cut(s)	228, 356, 381
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	295, 644
MalI	GATC	5 cut(s)	26, 309, 789, 807, 843
MboI	GATC	5 cut(s)	24, 307, 787, 805, 841
MboII	GAAGA	5 cut(s)	80, 451, 557, 669, 869
MflI	RGATCY	1 cut(s)	805
MluCI	AATT	7 cut(s)	232, 325, 591, 624, 781, 826, 869
Mly113I	GGCGCC	1 cut(s)	530
MmeI	TCCRAC	1 cut(s)	319
MnlI	CCTC	9 cut(s)	64, 92, 160, 424, 535, 614, 691, 718, 768
Mph1103I	ATGCAT	1 cut(s)	411
MseI	TTAA	3 cut(s)	537, 627, 639
MspA1I	CMGCKG	1 cut(s)	847
MspI	CCGG	4 cut(s)	164, 177, 198, 458
MspR9I	CCNGG	2 cut(s)	45, 177
MvaI	CCWGG	1 cut(s)	45
MwoI	GCNNNNNNNGC	2 cut(s)	169, 725
NarI	GGCGCC	1 cut(s)	530
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	5 cut(s)	24, 307, 787, 805, 841
NlaIV	GGNNCC	4 cut(s)	50, 504, 531, 807
NsiI	ATGCAT	1 cut(s)	411
NspI	RCATGY	1 cut(s)	760
PagI	TCATGA	2 cut(s)	705, 745
PceI	AGGCCT	1 cut(s)	778
PfeI	GAWTC	3 cut(s)	54, 388, 860
PflFI	GACNNNGTC	1 cut(s)	501
PkrI	GCNGC	1 cut(s)	816
PluTI	GGCGCC	1 cut(s)	533
PshBI	ATTAAT	1 cut(s)	627
Psp6I	CCWGG	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	43
PspN4I	GGNNCC	4 cut(s)	50, 504, 531, 807
PspPI	GGNCC	2 cut(s)	393, 503
PsuI	RGATCY	1 cut(s)	805
PsyI	GACNNNGTC	1 cut(s)	501
PvuII	CAGCTG	1 cut(s)	847
RsaI	GTAC	2 cut(s)	242, 456
RsaNI	GTAC	2 cut(s)	241, 455
Rsr2I	CGGWCCG	1 cut(s)	393
RsrII	CGGWCCG	1 cut(s)	393
SaqAI	TTAA	3 cut(s)	537, 627, 639
SatI	GCNGC	1 cut(s)	815
Sau3AI	GATC	5 cut(s)	24, 307, 787, 805, 841
Sau96I	GGNCC	2 cut(s)	393, 503
ScrFI	CCNGG	2 cut(s)	45, 177
SfaNI	GCATC	2 cut(s)	396, 451
SfoI	GGCGCC	1 cut(s)	531
SinI	GGWCC	2 cut(s)	393, 503
SmlI	CTYRAG	1 cut(s)	772
SmoI	CTYRAG	1 cut(s)	772
Sse9I	AATT	7 cut(s)	232, 325, 591, 624, 781, 826, 869
SseBI	AGGCCT	1 cut(s)	778
SspDI	GGCGCC	1 cut(s)	529
SspMI	CTAG	3 cut(s)	228, 356, 381
StuI	AGGCCT	1 cut(s)	778
StyD4I	CCNGG	2 cut(s)	43, 175
TaaI	ACNGT	4 cut(s)	333, 515, 644, 650
TaiI	ACGT	1 cut(s)	150
TaqII	GACCGA	1 cut(s)	410
TasI	AATT	7 cut(s)	232, 325, 591, 624, 781, 826, 869
TfiI	GAWTC	3 cut(s)	54, 388, 860
Tru1I	TTAA	3 cut(s)	537, 627, 639
Tru9I	TTAA	3 cut(s)	537, 627, 639
TscAI	CASTG	4 cut(s)	588, 655, 727, 824
TseI	GCWGC	1 cut(s)	814
TspDTI	ATGAA	5 cut(s)	579, 675, 694, 722, 762
TspRI	CASTG	4 cut(s)	588, 655, 727, 824
Tth111I	GACNNNGTC	1 cut(s)	501
VpaK11BI	GGWCC	2 cut(s)	393, 503
VspI	ATTAAT	1 cut(s)	627
XceI	RCATGY	1 cut(s)	760
XcmI	CCANNNNNNNNNTGG	1 cut(s)	816
XmiI	GTMKAC	2 cut(s)	150, 416
XspI	CTAG	3 cut(s)	228, 356, 381
ZraI	GACGTC	1 cut(s)	148
Zsp2I	ATGCAT	1 cut(s)	411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.