Rh3DG086600
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0002947
Physical Location & Seq
Forward (+)
6727408 .. 6728425
1018 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG086600.1

Sequence Viewer

Length: 903 bp
ATGATGGTATCAGCGGACGACTTGGTGATCGTCTTTCGCCAGCAACCAGGGTTCCGATTCCATCCCACCGAAGAGGAACTCGTCCTCTACTATCTGAAACGAAAAATCTGCCACAAAAGGTTCAAGCTCAACATCATTACTGAAACCGACGTCTACAAGTGCGAGCCGGAGGAGCTTCCCGGTTTGTCTTTATTACAAACCGGAGACCTGCAATGGTTCTTTTTCAACCCTAGAAATTGTAAGTACCCTAACAAACCTACAAGAATAAACAGGGCGACCAGACATGGCTACTGGAAAGTTACAGGAAAAGATCGCACGATTACGAATAATTCACGGTCTGTTGGAGTAAAGAAAACCCTAGTTTTCTATACAGGTCGTGCGCCTAGTGGGAATCGCACCGACTGGGTGATGCATGAGTATACTTTGCACGATGAGGAGCTGAAGAGATGTGGGAATGTACCGGATGCTTATGCTCTTTGCAAGGTTTACAAGAAAAGTGGACTGGGTCCAAAAAACGGTGAGCAATATGGGGCGCCGTTTAAGGAGGAAGACTGCTCTGATATGGATGAAGTCCAAGAAACCCCAGTGAAGCAAATTGAAAATCAGATTAGTAGGGCGAAAGGAGGAGTTAATCCAGTCATTAACAGTTACAGTTACAGTGATAGTTATGAAATCCCACATCCTTCTTCGTTTGATAGGGACATGGAGGAGTTCATGAAAAAGATTGCTGGTGAGGCTGAGAATGACATGTATCATGAAGCAGGCATGTTTCTACATGACTTGAGGCCTAATTTTGATCAACATCTATATATGGATCCAGAGCTGGACTGGGGTAATTATATTGAGCATGATCAGCTGAAATCAGAAGAATCAAGTCAATTTATTAACAATCGGCATGAATGA

Protein Analysis

300

Amino Acids

35.07

Weight (kDa)

5.81

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 142 2.6e-43 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 532
AccI GTMKAC 2 cut(s) 153, 419
AciI CCGC 1 cut(s) 14
AclWI GGATC 2 cut(s) 809, 822
AcuI CTGAAG 1 cut(s) 461
AcyI GRCGYC 2 cut(s) 150, 533
AfaI GTAC 2 cut(s) 245, 459
AfiI CCNNNNNNNGG 1 cut(s) 515
AflIII ACRYGT 1 cut(s) 747
AgsI TTSAA 3 cut(s) 124, 226, 599
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 5 cut(s) 127, 175, 439, 823, 856
AluI AGCT 5 cut(s) 127, 175, 439, 823, 856
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 2 cut(s) 809, 822
AoxI GGCC 1 cut(s) 785
AspLEI GCGC 2 cut(s) 382, 535
AspS9I GGNCC 1 cut(s) 506
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 4 cut(s) 37, 418, 530, 743
AvaII GGWCC 1 cut(s) 506
BamHI GGATCC 1 cut(s) 814
BanI GGYRCC 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 555
BccI CCATC 1 cut(s) 69
BceAI ACGGC 1 cut(s) 520
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BciT130I CCWGG 1 cut(s) 48
BclI TGATCA 2 cut(s) 796, 850
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 3 cut(s) 231, 359, 384
BfoI RGCGCY 1 cut(s) 536
BfuAI ACCTGC 1 cut(s) 216
Bme1390I CCNGG 2 cut(s) 48, 180
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 4 cut(s) 53, 507, 534, 816
BmrFI CCNGG 2 cut(s) 48, 180
BmrI ACTGGG 4 cut(s) 412, 512, 578, 838
BmsI GCATC 2 cut(s) 399, 454
BmuI ACTGGG 4 cut(s) 412, 512, 578, 838
BpiI GAAGAC 1 cut(s) 555
BpuEI CTTGAG 1 cut(s) 802
BpuMI CCSGG 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 801
BsaHI GRCGYC 2 cut(s) 150, 533
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 2 cut(s) 200, 460
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse1I ACTGG 6 cut(s) 296, 407, 507, 584, 635, 833
Bse3DI GCAATG 1 cut(s) 218
Bse8I GATNNNNATC 1 cut(s) 801
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 4 cut(s) 61, 469, 571, 679
BseJI GATNNNNATC 1 cut(s) 801
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMI GCAATG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 729
BseNI ACTGG 6 cut(s) 296, 407, 507, 584, 635, 833
BseRI GAGGAG 4 cut(s) 185, 449, 639, 722
BshFI GGCC 1 cut(s) 787
BshNI GGYRCC 1 cut(s) 532
BsiSI CCGG 4 cut(s) 167, 180, 201, 461
BslFI GGGAC 1 cut(s) 713
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 713
BsnI GGCC 1 cut(s) 787
Bso31I GGTCTC 1 cut(s) 198
Bsp143I GATC 5 cut(s) 27, 310, 796, 814, 850
BspACI CCGC 1 cut(s) 14
BspANI GGCC 1 cut(s) 787
BspCNI CTCAG 1 cut(s) 730
BspHI TCATGA 2 cut(s) 714, 754
BspLI GGNNCC 4 cut(s) 53, 507, 534, 816
BspMI ACCTGC 1 cut(s) 216
BspPI GGATC 2 cut(s) 809, 822
BspT107I GGYRCC 1 cut(s) 532
BspTNI GGTCTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 218
BsrI ACTGG 6 cut(s) 296, 407, 507, 584, 635, 833
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 5 cut(s) 27, 310, 796, 814, 850
BssNAI GTATAC 1 cut(s) 420
BssNI GRCGYC 2 cut(s) 150, 533
Bst1107I GTATAC 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 5 cut(s) 336, 518, 647, 653, 659
Bst6I CTCTTC 2 cut(s) 66, 437
BstACI GRCGYC 2 cut(s) 150, 533
BstC8I GCNNGC 3 cut(s) 41, 164, 763
BstDEI CTNAG 1 cut(s) 738
BstF5I GGATG 4 cut(s) 61, 469, 571, 679
BstH2I RGCGCY 1 cut(s) 536
BstHHI GCGC 2 cut(s) 382, 535
BstKTI GATC 5 cut(s) 30, 313, 799, 817, 853
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 5 cut(s) 27, 310, 796, 814, 850
BstMWI GCNNNNNNNGC 3 cut(s) 172, 734, 853
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 2 cut(s) 751, 769
BstSCI CCNGG 2 cut(s) 46, 178
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 1 cut(s) 814
BstYI RGATCY 1 cut(s) 814
BstZ17I GTATAC 1 cut(s) 420
BsuRI GGCC 1 cut(s) 787
BtsCI GGATG 4 cut(s) 61, 469, 571, 679
BtsIMutI CAGTG 2 cut(s) 591, 664
BveI ACCTGC 1 cut(s) 216
Cac8I GCNNGC 3 cut(s) 41, 164, 763
CciI TCATGA 2 cut(s) 714, 754
CfoI GCGC 2 cut(s) 382, 535
Cfr13I GGNCC 1 cut(s) 506
Csp6I GTAC 2 cut(s) 244, 458
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviJI RGCY 9 cut(s) 127, 166, 175, 288, 439, 737, 787, 823, 856
CviKI_1 RGCY 9 cut(s) 127, 166, 175, 288, 439, 737, 787, 823, 856
CviQI GTAC 2 cut(s) 244, 458
DdeI CTNAG 1 cut(s) 738
DinI GGCGCC 1 cut(s) 534
DpnI GATC 5 cut(s) 29, 312, 798, 816, 852
DpnII GATC 5 cut(s) 27, 310, 796, 814, 850
Eam1104I CTCTTC 2 cut(s) 66, 437
EarI CTCTTC 2 cut(s) 66, 437
Eco147I AGGCCT 1 cut(s) 787
Eco31I GGTCTC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 506
Eco57I CTGAAG 1 cut(s) 461
EcoRII CCWGG 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 414
EgeI GGCGCC 1 cut(s) 534
EheI GGCGCC 1 cut(s) 534
FaqI GGGAC 1 cut(s) 713
FbaI TGATCA 2 cut(s) 796, 850
FblI GTMKAC 2 cut(s) 153, 419
FokI GGATG 4 cut(s) 48, 476, 578, 666
FspBI CTAG 3 cut(s) 231, 359, 384
GlaI GCGC 2 cut(s) 381, 534
HaeII RGCGCY 1 cut(s) 536
HaeIII GGCC 1 cut(s) 787
HapII CCGG 4 cut(s) 167, 180, 201, 461
HhaI GCGC 2 cut(s) 382, 535
Hin1I GRCGYC 2 cut(s) 150, 533
Hin6I GCGC 2 cut(s) 380, 533
HinP1I GCGC 2 cut(s) 380, 533
HinfI GANTC 3 cut(s) 57, 391, 869
HpaII CCGG 4 cut(s) 167, 180, 201, 461
HphI GGTGA 4 cut(s) 37, 418, 530, 743
Hpy166II GTNNAC 4 cut(s) 154, 420, 487, 500
Hpy188I TCNGA 5 cut(s) 56, 96, 559, 606, 865
Hpy188III TCNNGA 3 cut(s) 715, 755, 818
Hpy8I GTNNAC 4 cut(s) 154, 420, 487, 500
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 693
HpyCH4III ACNGT 5 cut(s) 336, 518, 647, 653, 659
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 4 cut(s) 211, 412, 427, 480
HpyF10VI GCNNNNNNNGC 3 cut(s) 172, 734, 853
HpyF3I CTNAG 1 cut(s) 738
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 2 cut(s) 150, 533
HspAI GCGC 2 cut(s) 380, 533
KasI GGCGCC 1 cut(s) 532
Ksp22I TGATCA 2 cut(s) 796, 850
Kzo9I GATC 5 cut(s) 27, 310, 796, 814, 850
LmnI GCTCC 2 cut(s) 172, 436
LweI GCATC 2 cut(s) 399, 454
MaeI CTAG 3 cut(s) 231, 359, 384
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 3 cut(s) 298, 647, 653
MalI GATC 5 cut(s) 29, 312, 798, 816, 852
MboI GATC 5 cut(s) 27, 310, 796, 814, 850
MboII GAAGA 5 cut(s) 83, 454, 560, 678, 878
MflI RGATCY 1 cut(s) 814
MluCI AATT 6 cut(s) 235, 328, 594, 790, 835, 878
Mly113I GGCGCC 1 cut(s) 533
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 9 cut(s) 67, 95, 163, 427, 538, 617, 700, 727, 777
Mph1103I ATGCAT 1 cut(s) 414
MseI TTAA 4 cut(s) 540, 630, 642, 885
MspA1I CMGCKG 2 cut(s) 14, 856
MspI CCGG 4 cut(s) 167, 180, 201, 461
MspR9I CCNGG 2 cut(s) 48, 180
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 3 cut(s) 172, 734, 853
NarI GGCGCC 1 cut(s) 533
NciI CCSGG 1 cut(s) 180
NdeII GATC 5 cut(s) 27, 310, 796, 814, 850
NlaIV GGNNCC 4 cut(s) 53, 507, 534, 816
NsiI ATGCAT 1 cut(s) 414
NspI RCATGY 2 cut(s) 751, 769
PagI TCATGA 2 cut(s) 714, 754
PceI AGGCCT 1 cut(s) 787
PciI ACATGT 1 cut(s) 747
PfeI GAWTC 3 cut(s) 57, 391, 869
PflFI GACNNNGTC 1 cut(s) 504
PluTI GGCGCC 1 cut(s) 536
PscI ACATGT 1 cut(s) 747
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 4 cut(s) 53, 507, 534, 816
PspPI GGNCC 1 cut(s) 506
PsuI RGATCY 1 cut(s) 814
PsyI GACNNNGTC 1 cut(s) 504
PvuII CAGCTG 1 cut(s) 856
RsaI GTAC 2 cut(s) 245, 459
RsaNI GTAC 2 cut(s) 244, 458
SaqAI TTAA 4 cut(s) 540, 630, 642, 885
Sau3AI GATC 5 cut(s) 27, 310, 796, 814, 850
Sau96I GGNCC 1 cut(s) 506
ScrFI CCNGG 2 cut(s) 48, 180
SfaNI GCATC 2 cut(s) 399, 454
SfoI GGCGCC 1 cut(s) 534
SinI GGWCC 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 781
SmoI CTYRAG 1 cut(s) 781
Sse9I AATT 6 cut(s) 235, 328, 594, 790, 835, 878
SseBI AGGCCT 1 cut(s) 787
SsiI CCGC 1 cut(s) 14
SspDI GGCGCC 1 cut(s) 532
SspMI CTAG 3 cut(s) 231, 359, 384
StuI AGGCCT 1 cut(s) 787
StyD4I CCNGG 2 cut(s) 46, 178
TaaI ACNGT 5 cut(s) 336, 518, 647, 653, 659
TaiI ACGT 1 cut(s) 153
TasI AATT 6 cut(s) 235, 328, 594, 790, 835, 878
TfiI GAWTC 3 cut(s) 57, 391, 869
Tru1I TTAA 4 cut(s) 540, 630, 642, 885
Tru9I TTAA 4 cut(s) 540, 630, 642, 885
TscAI CASTG 2 cut(s) 591, 664
TspDTI ATGAA 5 cut(s) 582, 684, 703, 731, 771
TspRI CASTG 2 cut(s) 591, 664
Tth111I GACNNNGTC 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 506
XceI RCATGY 2 cut(s) 751, 769
XcmI CCANNNNNNNNNTGG 1 cut(s) 825
XmiI GTMKAC 2 cut(s) 153, 419
XspI CTAG 3 cut(s) 231, 359, 384
ZraI GACGTC 1 cut(s) 151
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.