Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0002947

Physical Location & Seq

Genomic Coordinates Reverse (-)

36274955 .. 36278053

Gene Structure 3099 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG193300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1581 bp

ATGGTCTCAGGAGACGACTTGGCGTCCGCCTTCTGCGACGGCAACTTTTGGCAGCCGGGGTTTCGGTTCCATCCCACCGACGAGGAACTCGTCCTCTACTATCTCAAGCGGAAGATCTGCAAGAAGAGGCTCAAGCTTAACGTCATCGCCGAGACCGACGTCTATAAGTGGGACCCTGAGGAACTTCCTGTGAGGCTCTCAACACTTTGCACTGATCATAATGCCCAACTGGGTTTTGATTCTTTAACCCAGAATCAGGAATATTATGCTCTTTACAAAGTTTTCAAGAAAAGTGGACCTGGTCCTAAAAATGGTGAGCAATATGGGGCGCCATTTAGAGAAGAAGATTGGGCTGATGATGAATGCCCGATAATAAATAGCTCTGCTGATAGGGAAATCTCAGTTGAGCAAGCTGGAGAGCTTGCTGCTAATTATAATGTGAAACCTTTTGGAGAAATTCCATTGAAGGAAGTTGAAGAGATTACTGCTAATGGTTATGTGAATGTTAACAGCGAAGTCCATTCTACAATAGATGACTTGGAATGGTTCATGAAACAGATTGCTGATGACGCTGTGCTTGACCTGCCACAGTTTAATGATCATGTTCACACCCTATCTCAGGTTGTTAGCGAAGAAGAAACACAAAGTGCTGTGGTGGATCTGTACTCCAGTGAAGTTAAATGCCCACAATCGATTACAACTTTTGATCCAAGTGGTCAGCAGGGCAATGCACATGCATGCTTTGACTTCACACAGTCAGCTACTACACAGATGCAACTGTATGAGGCATCTGAAGCATCTGCTTCTGACGTTCATCAACCGGAGCCTTTCACTCCCATACTACGTGAGGAGGACTTCCTGGAGATGGATGATCTCCTGGGTCCTGAACCTACTATTTCAAACTCTGGGAATTCCGGGGGTAACTTCCAGTTTGATGAGTTGGATGGATTTGACTTGTTCCATGATGCGGCCATGTTTTTCAATGACATGGGGCCCATTGAACAAGGAACTGTTTCTCATCAATTCATGAATTCAATGGAGGGGAATATTGTCAACCAGTTTGATTACCAGATACAACCAGTACCTCCAATTCAGATCAACCATCAGCTGAATCAAGAGTCAACTCAGATTAACAATCAGCTATGGGCACAGAATGAAAGGCAAGATCTCTATACTTCAGCAGAATCAAAGCAGGGGTCTGGACCTCAATTCAACTCAGGTGTGGTATACGATTCGTCAAATCATCCTCCACAAGCAAATCAAAATCAAAGTGGCAATGAAGCTGCCAGTGTTACTAGTCAGTTTTCTTCTGCCCTATGGTCTTTTGTGGAGTCTATACCTACTACTCCTGCATCTGCATCAGAGAATGCCTTGGTGAGTCGGGCCTTTGAACGGATGAATAGCTTTAGCAGGATGAGAATAATTGCGAGGAGCGCAAATGTCCCTGCAGGTAATGATTCTGAAACTAGGGGATCCCGAAAGAGGGGATTCTTCTTCATTCCAGTTCTTGTGGCACTATGTGCTATTTTTTGGGTCTTGATGGCATCTCTCAGGCAATGGGGGAGATGCATCTCCTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

526

Amino Acids

58.83

Weight (kDa)

4.45

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	19 - 65	4.4e-14	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34180 AT1G34180 AT1G34180 AT1G34180 AT1G34190
fragaria_vesca	FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_6g07970
malus_domestica	MD05G1037700.v1.1 MD10G1041500.v1.1
prunus_persica	Prupe.8G045800_v2.0.a1 Prupe.8G045800_v2.0.a1
pyrus_communis	pycom05g02790 pycom10g02860
rosa_chinensis	RchiOBHm_Chr3g0457681 RchiOBHm_Chr6g0273431
rosa_laevigata	RLG00000013619 RLG00000025196
rosa_multiflora	Rmu_co8212274.1_g000001 Rmu_sc0005891.1_g000016 Rmu_sc0007395.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421580 Rroxscaffold_7G00195380
rosa_rugosa	Rorug03G0022500 Rorug06G0074700
rosa_samantha	Rh3AG083200 Rh3BG085700 Rh3CG086000 Rh3DG086600 Rh6AG189800 Rh6BG193300 Rh6CG193000 Rh6DG184500
rosa_wichuraiana	Rw3G007120 Rw6G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	435
AatII	GACGTC	1 cut(s)	162
Acc36I	ACCTGC	2 cut(s)	591, 1439
AccB1I	GGYRCC	1 cut(s)	328
AccI	GTMKAC	1 cut(s)	1227
AciI	CCGC	3 cut(s)	27, 109, 968
AclWI	GGATC	4 cut(s)	666, 701, 1467, 1480
AcoI	YGGCCR	1 cut(s)	969
AcsI	RAATTY	3 cut(s)	456, 910, 1030
AcuI	CTGAAG	2 cut(s)	813, 1161
AcyI	GRCGYC	3 cut(s)	23, 159, 329
AdeI	CACNNNGTG	2 cut(s)	647, 1520
AfaI	GTAC	2 cut(s)	665, 1083
AfiI	CCNNNNNNNGG	8 cut(s)	256, 311, 619, 865, 967, 1392, 1482, 1483
AgsI	TTSAA	9 cut(s)	286, 466, 476, 900, 982, 1001, 1035, 1213, 1391
AhdI	GACNNNNNGTC	1 cut(s)	22
AhlI	ACTAGT	1 cut(s)	1295
AjnI	CCWGG	3 cut(s)	298, 858, 876
AluBI	AGCT	9 cut(s)	136, 381, 413, 421, 761, 1108, 1141, 1283, 1404
AluI	AGCT	9 cut(s)	136, 381, 413, 421, 761, 1108, 1141, 1283, 1404
Alw26I	GTCTC	3 cut(s)	6, 10, 146
AlwI	GGATC	4 cut(s)	666, 701, 1467, 1480
AoxI	GGCC	3 cut(s)	969, 992, 1383
ApaI	GGGCCC	1 cut(s)	996
ApeKI	GCWGC	3 cut(s)	52, 425, 1283
ApoI	RAATTY	3 cut(s)	456, 910, 1030
ArsI	GACNNNNNNTTYG	2 cut(s)	1181, 1213
Asp700I	GAANNNNTTC	1 cut(s)	1012
AspLEI	GCGC	2 cut(s)	331, 1436
AspS9I	GGNCC	8 cut(s)	172, 296, 302, 881, 992, 993, 1202, 1383
AsuC2I	CCSGG	2 cut(s)	57, 916
AsuHPI	GGTGA	2 cut(s)	326, 1387
AvaII	GGWCC	5 cut(s)	172, 296, 302, 881, 1202
AxyI	CCTNAGG	1 cut(s)	177
BaeGI	GKGCMC	2 cut(s)	996, 1150
BamHI	GGATCC	1 cut(s)	1472
BanI	GGYRCC	1 cut(s)	328
BanII	GRGCYC	1 cut(s)	996
BbvI	GCAGC	3 cut(s)	64, 412, 1270
BccI	CCATC	5 cut(s)	78, 859, 938, 1110, 1534
BceAI	ACGGC	1 cut(s)	55
BciT130I	CCWGG	3 cut(s)	300, 860, 878
BclI	TGATCA	2 cut(s)	214, 598
BcnI	CCSGG	2 cut(s)	57, 916
BcoDI	GTCTC	3 cut(s)	6, 10, 146
BcuI	ACTAGT	1 cut(s)	1295
BfaI	CTAG	2 cut(s)	1296, 1467
BfmI	CTRYAG	1 cut(s)	1446
BfoI	RGCGCY	1 cut(s)	332
BfuAI	ACCTGC	2 cut(s)	591, 1439
BglII	AGATCT	2 cut(s)	114, 1165
BisI	GCNGC	4 cut(s)	53, 426, 969, 1284
BlsI	GCNGC	4 cut(s)	54, 427, 970, 1285
Bme1390I	CCNGG	5 cut(s)	57, 300, 860, 878, 916
Bme18I	GGWCC	5 cut(s)	172, 296, 302, 881, 1202
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmgT120I	GGNCC	8 cut(s)	172, 296, 302, 881, 992, 993, 1202, 1383
BmiI	GGNNCC	9 cut(s)	68, 173, 174, 330, 825, 882, 993, 994, 1474
BmrFI	CCNGG	5 cut(s)	57, 300, 860, 878, 916
BmrI	ACTGGG	1 cut(s)	239
BmsI	GCATC	8 cut(s)	762, 797, 806, 955, 1361, 1367, 1553, 1556
BmuI	ACTGGG	1 cut(s)	239
BoxI	GACNNNNGTC	1 cut(s)	158
BpmI	CTGGAG	3 cut(s)	435, 652, 881
BpuEI	CTTGAG	2 cut(s)	89, 116
BpuMI	CCSGG	2 cut(s)	57, 916
Bsa29I	ATCGAT	1 cut(s)	692
BsaAI	YACGTR	1 cut(s)	845
BsaHI	GRCGYC	3 cut(s)	23, 159, 329
BsaI	GGTCTC	2 cut(s)	10, 146
BsaJI	CCNNGG	4 cut(s)	56, 877, 915, 1371
BsaWI	WCCGGW	1 cut(s)	820
Bsc4I	CCNNNNNNNGG	8 cut(s)	256, 311, 619, 865, 967, 1392, 1482, 1483
Bse1I	ACTGG	7 cut(s)	234, 669, 928, 1057, 1079, 1287, 1502
Bse21I	CCTNAGG	1 cut(s)	177
Bse3DI	GCAATG	3 cut(s)	733, 1282, 1562
BseBI	CCWGG	3 cut(s)	300, 860, 878
BseCI	ATCGAT	1 cut(s)	692
BseDI	CCNNGG	4 cut(s)	56, 877, 915, 1371
BseGI	GGATG	6 cut(s)	70, 874, 949, 1243, 1401, 1419
BseLI	CCNNNNNNNGG	8 cut(s)	256, 311, 619, 865, 967, 1392, 1482, 1483
BseMI	GCAATG	3 cut(s)	733, 1282, 1562
BseMII	CTCAG	7 cut(s)	21, 168, 414, 632, 1139, 1230, 1564
BseNI	ACTGG	7 cut(s)	234, 669, 928, 1057, 1079, 1287, 1502
BseRI	GAGGAG	3 cut(s)	863, 1444, 1564
BseSI	GKGCMC	2 cut(s)	996, 1150
BseXI	GCAGC	3 cut(s)	64, 412, 1270
BshFI	GGCC	3 cut(s)	971, 994, 1385
BshNI	GGYRCC	1 cut(s)	328
BshVI	ATCGAT	1 cut(s)	692
BsiSI	CCGG	3 cut(s)	56, 821, 915
BslFI	GGGAC	2 cut(s)	185, 1427
BslI	CCNNNNNNNGG	8 cut(s)	256, 311, 619, 865, 967, 1392, 1482, 1483
BsmAI	GTCTC	3 cut(s)	6, 10, 146
BsmBI	CGTCTC	1 cut(s)	6
BsmFI	GGGAC	2 cut(s)	185, 1427
BsmI	GAATGC	2 cut(s)	368, 1372
BsnI	GGCC	3 cut(s)	971, 994, 1385
Bso31I	GGTCTC	2 cut(s)	10, 146
Bsp120I	GGGCCC	1 cut(s)	992
Bsp1286I	GDGCHC	2 cut(s)	996, 1150
Bsp143I	GATC	9 cut(s)	114, 214, 598, 658, 706, 871, 1095, 1165, 1472
BspACI	CCGC	3 cut(s)	27, 109, 968
BspANI	GGCC	3 cut(s)	971, 994, 1385
BspCNI	CTCAG	7 cut(s)	20, 169, 413, 631, 1138, 1229, 1563
BspDI	ATCGAT	1 cut(s)	692
BspHI	TCATGA	3 cut(s)	549, 1026, 1577
BspLI	GGNNCC	9 cut(s)	68, 173, 174, 330, 825, 882, 993, 994, 1474
BspMAI	CTGCAG	1 cut(s)	1450
BspMI	ACCTGC	2 cut(s)	591, 1439
BspPI	GGATC	4 cut(s)	666, 701, 1467, 1480
BspT107I	GGYRCC	1 cut(s)	328
BspTNI	GGTCTC	2 cut(s)	10, 146
BsrDI	GCAATG	3 cut(s)	733, 1282, 1562
BsrI	ACTGG	7 cut(s)	234, 669, 928, 1057, 1079, 1287, 1502
BssECI	CCNNGG	4 cut(s)	56, 877, 915, 1371
BssMI	GATC	9 cut(s)	114, 214, 598, 658, 706, 871, 1095, 1165, 1472
BssNAI	GTATAC	1 cut(s)	1228
BssNI	GRCGYC	3 cut(s)	23, 159, 329
BssT1I	CCWWGG	1 cut(s)	1371
Bst1107I	GTATAC	1 cut(s)	1228
Bst2UI	CCWGG	3 cut(s)	300, 860, 878
Bst4CI	ACNGT	4 cut(s)	591, 756, 780, 1012
Bst6I	CTCTTC	2 cut(s)	119, 471
BstACI	GRCGYC	3 cut(s)	23, 159, 329
BstAPI	GCANNNNNTGC	1 cut(s)	1520
BstBAI	YACGTR	1 cut(s)	845
BstC8I	GCNNGC	3 cut(s)	411, 423, 739
BstDEI	CTNAG	7 cut(s)	7, 177, 400, 618, 1125, 1216, 1550
BstENI	CCTNNNNNAGG	1 cut(s)	617
BstF5I	GGATG	6 cut(s)	70, 874, 949, 1243, 1401, 1419
BstH2I	RGCGCY	1 cut(s)	332
BstHHI	GCGC	2 cut(s)	331, 1436
BstKTI	GATC	9 cut(s)	117, 217, 601, 661, 709, 874, 1098, 1168, 1475
BstMAI	GTCTC	3 cut(s)	6, 10, 146
BstMBI	GATC	9 cut(s)	114, 214, 598, 658, 706, 871, 1095, 1165, 1472
BstMWI	GCNNNNNNNGC	5 cut(s)	569, 583, 794, 1433, 1520
BstNI	CCWGG	3 cut(s)	300, 860, 878
BstNSI	RCATGY	2 cut(s)	737, 741
BstPAI	GACNNNNGTC	1 cut(s)	158
BstSCI	CCNGG	5 cut(s)	55, 298, 858, 876, 914
BstSFI	CTRYAG	1 cut(s)	1446
BstSLI	GKGCMC	2 cut(s)	996, 1150
BstV1I	GCAGC	3 cut(s)	64, 412, 1270
BstX2I	RGATCY	4 cut(s)	114, 658, 1165, 1472
BstYI	RGATCY	4 cut(s)	114, 658, 1165, 1472
BstZ17I	GTATAC	1 cut(s)	1228
Bsu15I	ATCGAT	1 cut(s)	692
Bsu36I	CCTNAGG	1 cut(s)	177
BsuRI	GGCC	3 cut(s)	971, 994, 1385
BsuTUI	ATCGAT	1 cut(s)	692
BtgZI	GCGATG	1 cut(s)	130
BtsCI	GGATG	6 cut(s)	70, 874, 949, 1243, 1401, 1419
BtsIMutI	CAGTG	3 cut(s)	210, 676, 1294
BveI	ACCTGC	2 cut(s)	591, 1439
Cac8I	GCNNGC	3 cut(s)	411, 423, 739
CciI	TCATGA	3 cut(s)	549, 1026, 1577
CfoI	GCGC	2 cut(s)	331, 1436
Cfr13I	GGNCC	8 cut(s)	172, 296, 302, 881, 992, 993, 1202, 1383
ClaI	ATCGAT	1 cut(s)	692
CseI	GACGC	2 cut(s)	12, 578
CsiI	ACCWGGT	1 cut(s)	298
Csp6I	GTAC	2 cut(s)	664, 1082
CspCI	CAANNNNNGTGG	2 cut(s)	274, 309
CviAII	CATG	9 cut(s)	550, 602, 734, 738, 962, 973, 988, 1027, 1578
CviQI	GTAC	2 cut(s)	664, 1082
DdeI	CTNAG	7 cut(s)	7, 177, 400, 618, 1125, 1216, 1550
DinI	GGCGCC	1 cut(s)	330
DpnI	GATC	9 cut(s)	116, 216, 600, 660, 708, 873, 1097, 1167, 1474
DpnII	GATC	9 cut(s)	114, 214, 598, 658, 706, 871, 1095, 1165, 1472
DraIII	CACNNNGTG	2 cut(s)	647, 1520
DriI	GACNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	1 cut(s)	969
Eam1104I	CTCTTC	2 cut(s)	119, 471
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EarI	CTCTTC	2 cut(s)	119, 471
EciI	GGCGGA	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	1371
Eco24I	GRGCYC	1 cut(s)	996
Eco31I	GGTCTC	2 cut(s)	10, 146
Eco47I	GGWCC	5 cut(s)	172, 296, 302, 881, 1202
Eco57I	CTGAAG	2 cut(s)	813, 1161
Eco81I	CCTNAGG	1 cut(s)	177
EcoNI	CCTNNNNNAGG	1 cut(s)	617
EcoO109I	RGGNCCY	3 cut(s)	172, 881, 992
EcoRI	GAATTC	2 cut(s)	910, 1030
EcoRII	CCWGG	3 cut(s)	298, 858, 876
EcoT14I	CCWWGG	1 cut(s)	1371
EcoT22I	ATGCAT	2 cut(s)	739, 1571
EcoT38I	GRGCYC	1 cut(s)	996
EgeI	GGCGCC	1 cut(s)	330
EheI	GGCGCC	1 cut(s)	330
ErhI	CCWWGG	1 cut(s)	1371
Esp3I	CGTCTC	1 cut(s)	6
FaeI	CATG	9 cut(s)	553, 605, 737, 741, 965, 976, 991, 1030, 1581
FaqI	GGGAC	2 cut(s)	185, 1427
FatI	CATG	9 cut(s)	549, 601, 733, 737, 961, 972, 987, 1026, 1577
FbaI	TGATCA	2 cut(s)	214, 598
FblI	GTMKAC	1 cut(s)	1227
Fnu4HI	GCNGC	4 cut(s)	53, 426, 969, 1284
FokI	GGATG	6 cut(s)	57, 881, 956, 1230, 1408, 1426
FriOI	GRGCYC	1 cut(s)	996
Fsp4HI	GCNGC	4 cut(s)	53, 426, 969, 1284
FspBI	CTAG	2 cut(s)	1296, 1467
GlaI	GCGC	2 cut(s)	330, 1435
GluI	GCNGC	4 cut(s)	53, 426, 969, 1284
GsuI	CTGGAG	3 cut(s)	435, 652, 881
HaeII	RGCGCY	1 cut(s)	332
HaeIII	GGCC	3 cut(s)	971, 994, 1385
HapII	CCGG	3 cut(s)	56, 821, 915
HgaI	GACGC	2 cut(s)	12, 578
HhaI	GCGC	2 cut(s)	331, 1436
Hin1I	GRCGYC	3 cut(s)	23, 159, 329
Hin1II	CATG	9 cut(s)	553, 605, 737, 741, 965, 976, 991, 1030, 1581
Hin6I	GCGC	2 cut(s)	329, 1434
HinP1I	GCGC	2 cut(s)	329, 1434
HincII	GTYRAC	3 cut(s)	508, 1054, 1122
HindII	GTYRAC	3 cut(s)	508, 1054, 1122
HindIII	AAGCTT	1 cut(s)	134
HpaI	GTTAAC	1 cut(s)	508
HpaII	CCGG	3 cut(s)	56, 821, 915
HphI	GGTGA	2 cut(s)	326, 1387
Hpy166II	GTNNAC	6 cut(s)	296, 508, 607, 1054, 1122, 1228
Hpy188I	TCNGA	6 cut(s)	793, 808, 1095, 1128, 1363, 1462
Hpy8I	GTNNAC	6 cut(s)	296, 508, 607, 1054, 1122, 1228
Hpy99I	CGWCG	3 cut(s)	41, 83, 161
HpyAV	CCTTC	2 cut(s)	40, 460
HpyCH4III	ACNGT	4 cut(s)	591, 756, 780, 1012
HpyCH4IV	ACGT	4 cut(s)	141, 159, 810, 844
HpyCH4V	TGCA	9 cut(s)	120, 210, 731, 737, 775, 1352, 1358, 1448, 1569
HpyF10VI	GCNNNNNNNGC	5 cut(s)	569, 583, 794, 1433, 1520
HpyF3I	CTNAG	7 cut(s)	7, 177, 400, 618, 1125, 1216, 1550
HpySE526I	ACGT	4 cut(s)	141, 159, 810, 844
Hsp92I	GRCGYC	3 cut(s)	23, 159, 329
Hsp92II	CATG	9 cut(s)	553, 605, 737, 741, 965, 976, 991, 1030, 1581
HspAI	GCGC	2 cut(s)	329, 1434
KasI	GGCGCC	1 cut(s)	328
KflI	GGGWCCC	1 cut(s)	172
Ksp22I	TGATCA	2 cut(s)	214, 598
KspAI	GTTAAC	1 cut(s)	508
Kzo9I	GATC	9 cut(s)	114, 214, 598, 658, 706, 871, 1095, 1165, 1472
LmnI	GCTCC	2 cut(s)	823, 1431
Lsp1109I	GCAGC	3 cut(s)	64, 412, 1270
LweI	GCATC	8 cut(s)	762, 797, 806, 955, 1361, 1367, 1553, 1556
MabI	ACCWGGT	1 cut(s)	298
MaeI	CTAG	2 cut(s)	1296, 1467
MaeII	ACGT	4 cut(s)	141, 159, 810, 844
MaeIII	GTNAC	2 cut(s)	920, 1291
MalI	GATC	9 cut(s)	116, 216, 600, 660, 708, 873, 1097, 1167, 1474
MboI	GATC	9 cut(s)	114, 214, 598, 658, 706, 871, 1095, 1165, 1472
MflI	RGATCY	4 cut(s)	114, 658, 1165, 1472
MhlI	GDGCHC	2 cut(s)	996, 1150
MluCI	AATT	8 cut(s)	430, 456, 910, 1022, 1030, 1089, 1208, 1422
Mly113I	GGCGCC	1 cut(s)	329
MlyI	GAGTC	3 cut(s)	1127, 1340, 1387
MmeI	TCCRAC	1 cut(s)	921
Mph1103I	ATGCAT	2 cut(s)	739, 1571
MroXI	GAANNNNTTC	1 cut(s)	1012
MseI	TTAA	6 cut(s)	138, 245, 507, 594, 678, 1131
MslI	CAYNNNNRTG	1 cut(s)	736
MspA1I	CMGCKG	1 cut(s)	1108
MspI	CCGG	3 cut(s)	56, 821, 915
MspR9I	CCNGG	5 cut(s)	57, 300, 860, 878, 916
Mva1269I	GAATGC	2 cut(s)	368, 1372
MvaI	CCWGG	3 cut(s)	300, 860, 878
MwoI	GCNNNNNNNGC	5 cut(s)	569, 583, 794, 1433, 1520
NarI	GGCGCC	1 cut(s)	329
NciI	CCSGG	2 cut(s)	57, 916
NdeII	GATC	9 cut(s)	114, 214, 598, 658, 706, 871, 1095, 1165, 1472
NlaIII	CATG	9 cut(s)	553, 605, 737, 741, 965, 976, 991, 1030, 1581
NlaIV	GGNNCC	9 cut(s)	68, 173, 174, 330, 825, 882, 993, 994, 1474
NmeAIII	GCCGAG	1 cut(s)	175
NsiI	ATGCAT	2 cut(s)	739, 1571
NspI	RCATGY	2 cut(s)	737, 741
PaeI	GCATGC	1 cut(s)	741
PagI	TCATGA	3 cut(s)	549, 1026, 1577
PcsI	WCGNNNNNNNCGW	3 cut(s)	87, 147, 153
PctI	GAATGC	2 cut(s)	368, 1372
PdmI	GAANNNNTTC	1 cut(s)	1012
PfeI	GAWTC	7 cut(s)	239, 253, 1111, 1184, 1232, 1457, 1488
PflFI	GACNNNGTC	1 cut(s)	300
PfoI	TCCNGGA	1 cut(s)	858
PkrI	GCNGC	4 cut(s)	54, 427, 970, 1285
PleI	GAGTC	3 cut(s)	1126, 1339, 1386
PluTI	GGCGCC	1 cut(s)	332
PpsI	GAGTC	3 cut(s)	1126, 1339, 1386
Ppu21I	YACGTR	1 cut(s)	845
PpuMI	RGGWCCY	2 cut(s)	172, 881
PshAI	GACNNNNGTC	1 cut(s)	158
PsiI	TTATAA	1 cut(s)	435
Psp5II	RGGWCCY	2 cut(s)	172, 881
Psp6I	CCWGG	3 cut(s)	298, 858, 876
PspGI	CCWGG	3 cut(s)	298, 858, 876
PspN4I	GGNNCC	9 cut(s)	68, 173, 174, 330, 825, 882, 993, 994, 1474
PspOMI	GGGCCC	1 cut(s)	992
PspPI	GGNCC	8 cut(s)	172, 296, 302, 881, 992, 993, 1202, 1383
PspPPI	RGGWCCY	2 cut(s)	172, 881
PstI	CTGCAG	1 cut(s)	1450
PsuI	RGATCY	4 cut(s)	114, 658, 1165, 1472
PsyI	GACNNNGTC	1 cut(s)	300
PvuII	CAGCTG	1 cut(s)	1108
RsaI	GTAC	2 cut(s)	665, 1083
RsaNI	GTAC	2 cut(s)	664, 1082
RseI	CAYNNNNRTG	1 cut(s)	736
SaqAI	TTAA	6 cut(s)	138, 245, 507, 594, 678, 1131
SatI	GCNGC	4 cut(s)	53, 426, 969, 1284
Sau3AI	GATC	9 cut(s)	114, 214, 598, 658, 706, 871, 1095, 1165, 1472
Sau96I	GGNCC	8 cut(s)	172, 296, 302, 881, 992, 993, 1202, 1383
SbfI	CCTGCAGG	1 cut(s)	1450
SchI	GAGTC	3 cut(s)	1127, 1340, 1387
ScrFI	CCNGG	5 cut(s)	57, 300, 860, 878, 916
SdaI	CCTGCAGG	1 cut(s)	1450
SduI	GDGCHC	2 cut(s)	996, 1150
SexAI	ACCWGGT	1 cut(s)	298
SfaNI	GCATC	8 cut(s)	762, 797, 806, 955, 1361, 1367, 1553, 1556
SfcI	CTRYAG	1 cut(s)	1446
SfoI	GGCGCC	1 cut(s)	330
SinI	GGWCC	5 cut(s)	172, 296, 302, 881, 1202
SmiMI	CAYNNNNRTG	1 cut(s)	736
SmlI	CTYRAG	2 cut(s)	104, 131
SmoI	CTYRAG	2 cut(s)	104, 131
SpeI	ACTAGT	1 cut(s)	1295
SphI	GCATGC	1 cut(s)	741
Sse8387I	CCTGCAGG	1 cut(s)	1450
Sse9I	AATT	8 cut(s)	430, 456, 910, 1022, 1030, 1089, 1208, 1422
SsiI	CCGC	3 cut(s)	27, 109, 968
SspDI	GGCGCC	1 cut(s)	328
SspI	AATATT	2 cut(s)	263, 1048
SspMI	CTAG	2 cut(s)	1296, 1467
StyD4I	CCNGG	5 cut(s)	55, 298, 858, 876, 914
StyI	CCWWGG	1 cut(s)	1371
TaaI	ACNGT	4 cut(s)	591, 756, 780, 1012
TaiI	ACGT	4 cut(s)	144, 162, 813, 847
TaqI	TCGA	1 cut(s)	692
TaqII	GACCGA	1 cut(s)	170
TasI	AATT	8 cut(s)	430, 456, 910, 1022, 1030, 1089, 1208, 1422
TatI	WGTACW	1 cut(s)	663
TauI	GCSGC	1 cut(s)	971
TfiI	GAWTC	7 cut(s)	239, 253, 1111, 1184, 1232, 1457, 1488
Tru1I	TTAA	6 cut(s)	138, 245, 507, 594, 678, 1131
Tru9I	TTAA	6 cut(s)	138, 245, 507, 594, 678, 1131
TscAI	CASTG	3 cut(s)	217, 676, 1294
TseI	GCWGC	3 cut(s)	52, 425, 1283
TspGWI	ACGGA	1 cut(s)	1408
TspRI	CASTG	3 cut(s)	217, 676, 1294
Tth111I	GACNNNGTC	1 cut(s)	300
VpaK11BI	GGWCC	5 cut(s)	172, 296, 302, 881, 1202
XagI	CCTNNNNNAGG	1 cut(s)	617
XapI	RAATTY	3 cut(s)	456, 910, 1030
XceI	RCATGY	2 cut(s)	737, 741
XmiI	GTMKAC	1 cut(s)	1227
XmnI	GAANNNNTTC	1 cut(s)	1012
XspI	CTAG	2 cut(s)	1296, 1467
ZraI	GACGTC	1 cut(s)	160
Zsp2I	ATGCAT	2 cut(s)	739, 1571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.