Rh3BG085700
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0002947
Physical Location & Seq
Forward (+)
6730933 .. 6732169
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG085700.1

Sequence Viewer

Length: 894 bp
ATGATGGTATCAGCAGACGACTTGGTGATCGTCTTTCGCCAGCAACCAGGGTTCCGATTCCATCCCACCGAAGAGGAACTCGTCCTCTACTATCTGAAACGAAAAATCTGCAACAAAAGGTTCAAGCTCAACATCATTACTGAAACCGACGTCTACAAGTGCGAGCCGGAGGAGCTTCCCGGTTTGTCTTTATTACAAACCGGAGACCTGCAATGGTTCTTTTTCAACCCTAGAAATTGTAAGTACCCTAACAAACCTACAAGAATAAACAGGGCGACCAGACATGGCTACTGGAAAGTTACAGGAAAAGATCGCACGATTACGAATAATTCACGGTCGGTTGGAGTAAAGAAAACCCTAGTTTTCTATACAGGCCGTGCGCCTAGTGGGAATCGCACCGACTGGGTGATGCATGAGTATACTTTGCACGATGAGGAGCTGAAGAGATGTGGGAATGTACCGGATGCTTATGCTCTTTGCAAGGTTTACAAGAAAAGTGGACTGGGTCCAAAAAACGGTGAGCAATATGGGGCGCCGTTTAAGGAGGAAGACTGCTCTGATATGGATGAAGTCCAAGAAACCGCAGTGAAGCAAATTGAAAATCAGATTAGTAGGGCGAAAGGAGGAGTTAATCCAGTCATTAACAGCTACAGTGATAGTTATGAAATCCCACATCCTTCTTCGTTTGATAGGGACATGGAGGAGTTCATGAAAAAGATTGCTGGTGAGGCTGAGCATGACATGTATCATGAAGCAGGCATGTTTCTACATGACTTGAGGCCTAATTTTGATCAACATCTATATATGGATCCAGAGCTGGACTGGGGTAATTATATTGACCATGATCAGCTGAAATCAGAAGAATCAAGTCAATTTAACAATCGGCATGAATGA

Protein Analysis

297

Amino Acids

34.67

Weight (kDa)

5.81

Isoelectric Point (pI)

44.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 16 - 142 1.8e-43 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 153
Acc36I ACCTGC 1 cut(s) 216
AccB1I GGYRCC 1 cut(s) 532
AccI GTMKAC 2 cut(s) 153, 419
AciI CCGC 1 cut(s) 582
AclWI GGATC 2 cut(s) 803, 816
AcuI CTGAAG 1 cut(s) 461
AcyI GRCGYC 2 cut(s) 150, 533
AfaI GTAC 2 cut(s) 245, 459
AfiI CCNNNNNNNGG 1 cut(s) 515
AflIII ACRYGT 1 cut(s) 741
AgsI TTSAA 3 cut(s) 124, 226, 599
AjnI CCWGG 1 cut(s) 46
AluBI AGCT 6 cut(s) 127, 175, 439, 648, 817, 850
AluI AGCT 6 cut(s) 127, 175, 439, 648, 817, 850
Alw26I GTCTC 1 cut(s) 198
AlwI GGATC 2 cut(s) 803, 816
AoxI GGCC 2 cut(s) 373, 779
AspLEI GCGC 2 cut(s) 382, 535
AspS9I GGNCC 1 cut(s) 506
AsuC2I CCSGG 1 cut(s) 180
AsuHPI GGTGA 4 cut(s) 37, 418, 530, 737
AvaII GGWCC 1 cut(s) 506
BamHI GGATCC 1 cut(s) 808
BanI GGYRCC 1 cut(s) 532
BbsI GAAGAC 1 cut(s) 555
BccI CCATC 1 cut(s) 69
BceAI ACGGC 2 cut(s) 360, 520
BcgI CGANNNNNNTGC 2 cut(s) 90, 124
BciT130I CCWGG 1 cut(s) 48
BclI TGATCA 2 cut(s) 790, 844
BcnI CCSGG 1 cut(s) 180
BcoDI GTCTC 1 cut(s) 198
BfaI CTAG 3 cut(s) 231, 359, 384
BfmI CTRYAG 1 cut(s) 649
BfoI RGCGCY 1 cut(s) 536
BfuAI ACCTGC 1 cut(s) 216
BlpI GCTNAGC 1 cut(s) 732
Bme1390I CCNGG 2 cut(s) 48, 180
Bme18I GGWCC 1 cut(s) 506
BmgT120I GGNCC 1 cut(s) 506
BmiI GGNNCC 4 cut(s) 53, 507, 534, 810
BmrFI CCNGG 2 cut(s) 48, 180
BmrI ACTGGG 3 cut(s) 412, 512, 832
BmsI GCATC 2 cut(s) 399, 454
BmuI ACTGGG 3 cut(s) 412, 512, 832
BpiI GAAGAC 1 cut(s) 555
Bpu1102I GCTNAGC 1 cut(s) 732
BpuEI CTTGAG 1 cut(s) 796
BpuMI CCSGG 1 cut(s) 180
BsaBI GATNNNNATC 1 cut(s) 795
BsaHI GRCGYC 2 cut(s) 150, 533
BsaI GGTCTC 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 47
BsaWI WCCGGW 2 cut(s) 200, 460
Bsc4I CCNNNNNNNGG 1 cut(s) 515
Bse1I ACTGG 5 cut(s) 296, 407, 507, 635, 827
Bse3DI GCAATG 1 cut(s) 218
Bse8I GATNNNNATC 1 cut(s) 795
BseBI CCWGG 1 cut(s) 48
BseDI CCNNGG 1 cut(s) 47
BseGI GGATG 4 cut(s) 61, 469, 571, 673
BseJI GATNNNNATC 1 cut(s) 795
BseLI CCNNNNNNNGG 1 cut(s) 515
BseMI GCAATG 1 cut(s) 218
BseMII CTCAG 1 cut(s) 723
BseNI ACTGG 5 cut(s) 296, 407, 507, 635, 827
BseRI GAGGAG 4 cut(s) 185, 449, 639, 716
Bsh1285I CGRYCG 1 cut(s) 338
BshFI GGCC 2 cut(s) 375, 781
BshNI GGYRCC 1 cut(s) 532
BsiEI CGRYCG 1 cut(s) 338
BsiSI CCGG 4 cut(s) 167, 180, 201, 461
BslFI GGGAC 1 cut(s) 707
BslI CCNNNNNNNGG 1 cut(s) 515
BsmAI GTCTC 1 cut(s) 198
BsmFI GGGAC 1 cut(s) 707
BsnI GGCC 2 cut(s) 375, 781
Bso31I GGTCTC 1 cut(s) 198
Bsp143I GATC 5 cut(s) 27, 310, 790, 808, 844
Bsp1720I GCTNAGC 1 cut(s) 732
BspACI CCGC 1 cut(s) 582
BspANI GGCC 2 cut(s) 375, 781
BspCNI CTCAG 1 cut(s) 724
BspHI TCATGA 2 cut(s) 708, 748
BspLI GGNNCC 4 cut(s) 53, 507, 534, 810
BspMI ACCTGC 1 cut(s) 216
BspPI GGATC 2 cut(s) 803, 816
BspT107I GGYRCC 1 cut(s) 532
BspTNI GGTCTC 1 cut(s) 198
BsrDI GCAATG 1 cut(s) 218
BsrI ACTGG 5 cut(s) 296, 407, 507, 635, 827
BssECI CCNNGG 1 cut(s) 47
BssMI GATC 5 cut(s) 27, 310, 790, 808, 844
BssNAI GTATAC 1 cut(s) 420
BssNI GRCGYC 2 cut(s) 150, 533
Bst1107I GTATAC 1 cut(s) 420
Bst2UI CCWGG 1 cut(s) 48
Bst4CI ACNGT 3 cut(s) 336, 518, 653
Bst6I CTCTTC 2 cut(s) 66, 437
BstACI GRCGYC 2 cut(s) 150, 533
BstC8I GCNNGC 3 cut(s) 41, 164, 757
BstDEI CTNAG 1 cut(s) 732
BstF5I GGATG 4 cut(s) 61, 469, 571, 673
BstH2I RGCGCY 1 cut(s) 536
BstHHI GCGC 2 cut(s) 382, 535
BstKTI GATC 5 cut(s) 30, 313, 793, 811, 847
BstMAI GTCTC 1 cut(s) 198
BstMBI GATC 5 cut(s) 27, 310, 790, 808, 844
BstMCI CGRYCG 1 cut(s) 338
BstMWI GCNNNNNNNGC 2 cut(s) 172, 728
BstNI CCWGG 1 cut(s) 48
BstNSI RCATGY 2 cut(s) 745, 763
BstSCI CCNGG 2 cut(s) 46, 178
BstSFI CTRYAG 1 cut(s) 649
BstV2I GAAGAC 1 cut(s) 555
BstX2I RGATCY 1 cut(s) 808
BstYI RGATCY 1 cut(s) 808
BstZ17I GTATAC 1 cut(s) 420
BsuRI GGCC 2 cut(s) 375, 781
BtsCI GGATG 4 cut(s) 61, 469, 571, 673
BtsI GCAGTG 1 cut(s) 591
BtsIMutI CAGTG 2 cut(s) 591, 658
BveI ACCTGC 1 cut(s) 216
Cac8I GCNNGC 3 cut(s) 41, 164, 757
CciI TCATGA 2 cut(s) 708, 748
CfoI GCGC 2 cut(s) 382, 535
Cfr13I GGNCC 1 cut(s) 506
Csp6I GTAC 2 cut(s) 244, 458
CspCI CAANNNNNGTGG 2 cut(s) 478, 513
CviQI GTAC 2 cut(s) 244, 458
DdeI CTNAG 1 cut(s) 732
DinI GGCGCC 1 cut(s) 534
DpnI GATC 5 cut(s) 29, 312, 792, 810, 846
DpnII GATC 5 cut(s) 27, 310, 790, 808, 844
Eam1104I CTCTTC 2 cut(s) 66, 437
EarI CTCTTC 2 cut(s) 66, 437
Eco147I AGGCCT 1 cut(s) 781
Eco31I GGTCTC 1 cut(s) 198
Eco47I GGWCC 1 cut(s) 506
Eco57I CTGAAG 1 cut(s) 461
EcoRII CCWGG 1 cut(s) 46
EcoT22I ATGCAT 1 cut(s) 414
EgeI GGCGCC 1 cut(s) 534
EheI GGCGCC 1 cut(s) 534
FaqI GGGAC 1 cut(s) 707
FbaI TGATCA 2 cut(s) 790, 844
FblI GTMKAC 2 cut(s) 153, 419
FokI GGATG 4 cut(s) 48, 476, 578, 660
FspBI CTAG 3 cut(s) 231, 359, 384
GlaI GCGC 2 cut(s) 381, 534
HaeII RGCGCY 1 cut(s) 536
HaeIII GGCC 2 cut(s) 375, 781
HapII CCGG 4 cut(s) 167, 180, 201, 461
HhaI GCGC 2 cut(s) 382, 535
Hin1I GRCGYC 2 cut(s) 150, 533
Hin6I GCGC 2 cut(s) 380, 533
HinP1I GCGC 2 cut(s) 380, 533
HinfI GANTC 3 cut(s) 57, 391, 863
HpaII CCGG 4 cut(s) 167, 180, 201, 461
HphI GGTGA 4 cut(s) 37, 418, 530, 737
Hpy166II GTNNAC 4 cut(s) 154, 420, 487, 500
Hpy188I TCNGA 5 cut(s) 56, 96, 559, 606, 859
Hpy188III TCNNGA 3 cut(s) 709, 749, 812
Hpy8I GTNNAC 4 cut(s) 154, 420, 487, 500
Hpy99I CGWCG 1 cut(s) 152
HpyAV CCTTC 1 cut(s) 687
HpyCH4III ACNGT 3 cut(s) 336, 518, 653
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 5 cut(s) 111, 211, 412, 427, 480
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 728
HpyF3I CTNAG 1 cut(s) 732
HpySE526I ACGT 1 cut(s) 150
Hsp92I GRCGYC 2 cut(s) 150, 533
HspAI GCGC 2 cut(s) 380, 533
KasI GGCGCC 1 cut(s) 532
Ksp22I TGATCA 2 cut(s) 790, 844
Kzo9I GATC 5 cut(s) 27, 310, 790, 808, 844
LmnI GCTCC 2 cut(s) 172, 436
LweI GCATC 2 cut(s) 399, 454
MaeI CTAG 3 cut(s) 231, 359, 384
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 1 cut(s) 298
MalI GATC 5 cut(s) 29, 312, 792, 810, 846
MboI GATC 5 cut(s) 27, 310, 790, 808, 844
MboII GAAGA 5 cut(s) 83, 454, 560, 672, 872
MflI RGATCY 1 cut(s) 808
MluCI AATT 6 cut(s) 235, 328, 594, 784, 829, 872
Mly113I GGCGCC 1 cut(s) 533
MmeI TCCRAC 1 cut(s) 322
MnlI CCTC 9 cut(s) 67, 95, 163, 427, 538, 617, 694, 721, 771
Mph1103I ATGCAT 1 cut(s) 414
MseI TTAA 4 cut(s) 540, 630, 642, 876
MspA1I CMGCKG 1 cut(s) 850
MspI CCGG 4 cut(s) 167, 180, 201, 461
MspR9I CCNGG 2 cut(s) 48, 180
MvaI CCWGG 1 cut(s) 48
MwoI GCNNNNNNNGC 2 cut(s) 172, 728
NarI GGCGCC 1 cut(s) 533
NciI CCSGG 1 cut(s) 180
NdeII GATC 5 cut(s) 27, 310, 790, 808, 844
NlaIV GGNNCC 4 cut(s) 53, 507, 534, 810
NsiI ATGCAT 1 cut(s) 414
NspI RCATGY 2 cut(s) 745, 763
PagI TCATGA 2 cut(s) 708, 748
PceI AGGCCT 1 cut(s) 781
PciI ACATGT 1 cut(s) 741
PfeI GAWTC 3 cut(s) 57, 391, 863
PflFI GACNNNGTC 1 cut(s) 504
PluTI GGCGCC 1 cut(s) 536
PscI ACATGT 1 cut(s) 741
Psp6I CCWGG 1 cut(s) 46
PspGI CCWGG 1 cut(s) 46
PspN4I GGNNCC 4 cut(s) 53, 507, 534, 810
PspPI GGNCC 1 cut(s) 506
PsuI RGATCY 1 cut(s) 808
PsyI GACNNNGTC 1 cut(s) 504
PvuII CAGCTG 1 cut(s) 850
RsaI GTAC 2 cut(s) 245, 459
RsaNI GTAC 2 cut(s) 244, 458
SaqAI TTAA 4 cut(s) 540, 630, 642, 876
Sau3AI GATC 5 cut(s) 27, 310, 790, 808, 844
Sau96I GGNCC 1 cut(s) 506
ScrFI CCNGG 2 cut(s) 48, 180
SfaNI GCATC 2 cut(s) 399, 454
SfcI CTRYAG 1 cut(s) 649
SfoI GGCGCC 1 cut(s) 534
SinI GGWCC 1 cut(s) 506
SmlI CTYRAG 1 cut(s) 775
SmoI CTYRAG 1 cut(s) 775
Sse9I AATT 6 cut(s) 235, 328, 594, 784, 829, 872
SseBI AGGCCT 1 cut(s) 781
SsiI CCGC 1 cut(s) 582
SspDI GGCGCC 1 cut(s) 532
SspMI CTAG 3 cut(s) 231, 359, 384
StuI AGGCCT 1 cut(s) 781
StyD4I CCNGG 2 cut(s) 46, 178
TaaI ACNGT 3 cut(s) 336, 518, 653
TaiI ACGT 1 cut(s) 153
TasI AATT 6 cut(s) 235, 328, 594, 784, 829, 872
TfiI GAWTC 3 cut(s) 57, 391, 863
Tru1I TTAA 4 cut(s) 540, 630, 642, 876
Tru9I TTAA 4 cut(s) 540, 630, 642, 876
TscAI CASTG 2 cut(s) 591, 658
TspDTI ATGAA 5 cut(s) 582, 678, 697, 725, 765
TspRI CASTG 2 cut(s) 591, 658
Tth111I GACNNNGTC 1 cut(s) 504
VpaK11BI GGWCC 1 cut(s) 506
XceI RCATGY 2 cut(s) 745, 763
XcmI CCANNNNNNNNNTGG 1 cut(s) 819
XmiI GTMKAC 2 cut(s) 153, 419
XspI CTAG 3 cut(s) 231, 359, 384
ZraI GACGTC 1 cut(s) 151
Zsp2I ATGCAT 1 cut(s) 414
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.