Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007395.1

Orthogroup ID

OG0002947

Physical Location & Seq

Genomic Coordinates Reverse (-)

18360 .. 19262

Gene Structure 903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007395.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

atgatggtatcagcggacgacttggtgatcgtctttcgccagcaaccagggttccgattccatcccaccgaagaggaactcgtcctctactatctgaaacgaaaaatctgccacaaaaggttcaagctcaacatcattactgaaaccgacgtctacaagtgcgagccggaggagcttcccggtttgtctttattacaaaccggagacctgcaatggttctttttcaaccctagaaattgtaagtaccctaacaaacctacaagaataaacagggcgaccagacatggctactggaaagttacaggaaaagatcgcacgattacgaataattcacggtcggttggagtaaagaaaaccctagttttctatacaggccgtgcgcctagtgggaatcgcaccgactgggtgatgcatgagtatactttgcacgatgaggagctgaagagatgtgggaatgtaccggatgcttatgctctttgcaaggtttacaagaaaagtggactgggtccaaaaaacggtgagcaatatggggcgccgtttaaggaggaagactgctctgatatggatgaagtccaagaaaccccagtgaataagcaaattgaaaatcagattagtagggcgaaaggaggagttaatccagtcattaacagttacagttacggtgatagttatgaaagcccacatccttcttcgtttgatagggacatggaggagttcatgaaaaagattgctggtgaggctgagcatgacatgtatcatgaagcaggcatgtttctacatgacttgaggcctaattttgatcaacatctatatatggatccagagctggactggggtaattatattgaccatgatcagctgaaatcagaagaatcaagtcaatttaacaatcggcatgaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

300

Amino Acids

35.03

Weight (kDa)

5.87

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34180 AT1G34180 AT1G34180 AT1G34180 AT1G34190
fragaria_vesca	FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_6g07970
malus_domestica	MD05G1037700.v1.1 MD10G1041500.v1.1
prunus_persica	Prupe.8G045800_v2.0.a1 Prupe.8G045800_v2.0.a1
pyrus_communis	pycom05g02790 pycom10g02860
rosa_chinensis	RchiOBHm_Chr3g0457681 RchiOBHm_Chr6g0273431
rosa_laevigata	RLG00000013619 RLG00000025196
rosa_multiflora	Rmu_co8212274.1_g000001 Rmu_sc0005891.1_g000016 Rmu_sc0007395.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421580 Rroxscaffold_7G00195380
rosa_rugosa	Rorug03G0022500 Rorug06G0074700
rosa_samantha	Rh3AG083200 Rh3BG085700 Rh3CG086000 Rh3DG086600 Rh6AG189800 Rh6BG193300 Rh6CG193000 Rh6DG184500
rosa_wichuraiana	Rw3G007120 Rw6G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	153
Acc36I	ACCTGC	1 cut(s)	216
AccB1I	GGYRCC	1 cut(s)	532
AccI	GTMKAC	2 cut(s)	153, 419
AciI	CCGC	1 cut(s)	14
AclWI	GGATC	2 cut(s)	812, 825
AcuI	CTGAAG	1 cut(s)	461
AcyI	GRCGYC	2 cut(s)	150, 533
AfaI	GTAC	2 cut(s)	245, 459
AfiI	CCNNNNNNNGG	1 cut(s)	515
AflIII	ACRYGT	1 cut(s)	750
AgsI	TTSAA	3 cut(s)	124, 226, 602
AjnI	CCWGG	1 cut(s)	46
AluBI	AGCT	5 cut(s)	127, 175, 439, 826, 859
AluI	AGCT	5 cut(s)	127, 175, 439, 826, 859
Alw26I	GTCTC	1 cut(s)	198
AlwI	GGATC	2 cut(s)	812, 825
AoxI	GGCC	2 cut(s)	373, 788
AspLEI	GCGC	2 cut(s)	382, 535
AspS9I	GGNCC	1 cut(s)	506
AsuC2I	CCSGG	1 cut(s)	180
AsuHPI	GGTGA	5 cut(s)	37, 418, 530, 674, 746
AvaII	GGWCC	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	817
BanI	GGYRCC	1 cut(s)	532
BbsI	GAAGAC	1 cut(s)	555
BccI	CCATC	1 cut(s)	69
BceAI	ACGGC	2 cut(s)	360, 520
BcgI	CGANNNNNNTGC	2 cut(s)	90, 124
BciT130I	CCWGG	1 cut(s)	48
BclI	TGATCA	2 cut(s)	799, 853
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	198
BfaI	CTAG	3 cut(s)	231, 359, 384
BfoI	RGCGCY	1 cut(s)	536
BfuAI	ACCTGC	1 cut(s)	216
BlpI	GCTNAGC	1 cut(s)	741
Bme1390I	CCNGG	2 cut(s)	48, 180
Bme18I	GGWCC	1 cut(s)	506
BmgT120I	GGNCC	1 cut(s)	506
BmiI	GGNNCC	4 cut(s)	53, 507, 534, 819
BmrFI	CCNGG	2 cut(s)	48, 180
BmrI	ACTGGG	4 cut(s)	412, 512, 578, 841
BmsI	GCATC	2 cut(s)	399, 454
BmuI	ACTGGG	4 cut(s)	412, 512, 578, 841
BpiI	GAAGAC	1 cut(s)	555
Bpu1102I	GCTNAGC	1 cut(s)	741
BpuEI	CTTGAG	1 cut(s)	805
BpuMI	CCSGG	1 cut(s)	180
BsaBI	GATNNNNATC	1 cut(s)	804
BsaHI	GRCGYC	2 cut(s)	150, 533
BsaI	GGTCTC	1 cut(s)	198
BsaJI	CCNNGG	1 cut(s)	47
BsaWI	WCCGGW	2 cut(s)	200, 460
Bsc4I	CCNNNNNNNGG	1 cut(s)	515
Bse1I	ACTGG	6 cut(s)	296, 407, 507, 584, 638, 836
Bse3DI	GCAATG	1 cut(s)	218
Bse8I	GATNNNNATC	1 cut(s)	804
BseBI	CCWGG	1 cut(s)	48
BseDI	CCNNGG	1 cut(s)	47
BseGI	GGATG	4 cut(s)	61, 469, 571, 682
BseJI	GATNNNNATC	1 cut(s)	804
BseLI	CCNNNNNNNGG	1 cut(s)	515
BseMI	GCAATG	1 cut(s)	218
BseMII	CTCAG	1 cut(s)	732
BseNI	ACTGG	6 cut(s)	296, 407, 507, 584, 638, 836
BseRI	GAGGAG	4 cut(s)	185, 449, 642, 725
Bsh1285I	CGRYCG	1 cut(s)	338
BshFI	GGCC	2 cut(s)	375, 790
BshNI	GGYRCC	1 cut(s)	532
BsiEI	CGRYCG	1 cut(s)	338
BsiSI	CCGG	4 cut(s)	167, 180, 201, 461
BslFI	GGGAC	1 cut(s)	716
BslI	CCNNNNNNNGG	1 cut(s)	515
BsmAI	GTCTC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	716
BsnI	GGCC	2 cut(s)	375, 790
Bso31I	GGTCTC	1 cut(s)	198
Bsp143I	GATC	5 cut(s)	27, 310, 799, 817, 853
Bsp1720I	GCTNAGC	1 cut(s)	741
BspACI	CCGC	1 cut(s)	14
BspANI	GGCC	2 cut(s)	375, 790
BspCNI	CTCAG	1 cut(s)	733
BspHI	TCATGA	2 cut(s)	717, 757
BspLI	GGNNCC	4 cut(s)	53, 507, 534, 819
BspMI	ACCTGC	1 cut(s)	216
BspPI	GGATC	2 cut(s)	812, 825
BspT107I	GGYRCC	1 cut(s)	532
BspTNI	GGTCTC	1 cut(s)	198
BsrDI	GCAATG	1 cut(s)	218
BsrI	ACTGG	6 cut(s)	296, 407, 507, 584, 638, 836
BssECI	CCNNGG	1 cut(s)	47
BssMI	GATC	5 cut(s)	27, 310, 799, 817, 853
BssNAI	GTATAC	1 cut(s)	420
BssNI	GRCGYC	2 cut(s)	150, 533
Bst1107I	GTATAC	1 cut(s)	420
Bst2UI	CCWGG	1 cut(s)	48
Bst4CI	ACNGT	5 cut(s)	336, 518, 650, 656, 662
Bst6I	CTCTTC	2 cut(s)	66, 437
BstACI	GRCGYC	2 cut(s)	150, 533
BstC8I	GCNNGC	3 cut(s)	41, 164, 766
BstDEI	CTNAG	1 cut(s)	741
BstF5I	GGATG	4 cut(s)	61, 469, 571, 682
BstH2I	RGCGCY	1 cut(s)	536
BstHHI	GCGC	2 cut(s)	382, 535
BstKTI	GATC	5 cut(s)	30, 313, 802, 820, 856
BstMAI	GTCTC	1 cut(s)	198
BstMBI	GATC	5 cut(s)	27, 310, 799, 817, 853
BstMCI	CGRYCG	1 cut(s)	338
BstMWI	GCNNNNNNNGC	2 cut(s)	172, 737
BstNI	CCWGG	1 cut(s)	48
BstNSI	RCATGY	2 cut(s)	754, 772
BstSCI	CCNGG	2 cut(s)	46, 178
BstV2I	GAAGAC	1 cut(s)	555
BstX2I	RGATCY	1 cut(s)	817
BstYI	RGATCY	1 cut(s)	817
BstZ17I	GTATAC	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	375, 790
BtsCI	GGATG	4 cut(s)	61, 469, 571, 682
BtsIMutI	CAGTG	1 cut(s)	591
BveI	ACCTGC	1 cut(s)	216
Cac8I	GCNNGC	3 cut(s)	41, 164, 766
CciI	TCATGA	2 cut(s)	717, 757
CfoI	GCGC	2 cut(s)	382, 535
Cfr13I	GGNCC	1 cut(s)	506
Csp6I	GTAC	2 cut(s)	244, 458
CspCI	CAANNNNNGTGG	2 cut(s)	478, 513
CviQI	GTAC	2 cut(s)	244, 458
DdeI	CTNAG	1 cut(s)	741
DinI	GGCGCC	1 cut(s)	534
DpnI	GATC	5 cut(s)	29, 312, 801, 819, 855
DpnII	GATC	5 cut(s)	27, 310, 799, 817, 853
Eam1104I	CTCTTC	2 cut(s)	66, 437
EarI	CTCTTC	2 cut(s)	66, 437
Eco147I	AGGCCT	1 cut(s)	790
Eco31I	GGTCTC	1 cut(s)	198
Eco47I	GGWCC	1 cut(s)	506
Eco57I	CTGAAG	1 cut(s)	461
EcoRII	CCWGG	1 cut(s)	46
EcoT22I	ATGCAT	1 cut(s)	414
EgeI	GGCGCC	1 cut(s)	534
EheI	GGCGCC	1 cut(s)	534
FaqI	GGGAC	1 cut(s)	716
FbaI	TGATCA	2 cut(s)	799, 853
FblI	GTMKAC	2 cut(s)	153, 419
FokI	GGATG	4 cut(s)	48, 476, 578, 669
FspBI	CTAG	3 cut(s)	231, 359, 384
GlaI	GCGC	2 cut(s)	381, 534
HaeII	RGCGCY	1 cut(s)	536
HaeIII	GGCC	2 cut(s)	375, 790
HapII	CCGG	4 cut(s)	167, 180, 201, 461
HhaI	GCGC	2 cut(s)	382, 535
Hin1I	GRCGYC	2 cut(s)	150, 533
Hin6I	GCGC	2 cut(s)	380, 533
HinP1I	GCGC	2 cut(s)	380, 533
HinfI	GANTC	3 cut(s)	57, 391, 872
HpaII	CCGG	4 cut(s)	167, 180, 201, 461
HphI	GGTGA	5 cut(s)	37, 418, 530, 674, 746
Hpy166II	GTNNAC	4 cut(s)	154, 420, 487, 500
Hpy188I	TCNGA	5 cut(s)	56, 96, 559, 609, 868
Hpy188III	TCNNGA	3 cut(s)	718, 758, 821
Hpy8I	GTNNAC	4 cut(s)	154, 420, 487, 500
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	1 cut(s)	696
HpyCH4III	ACNGT	5 cut(s)	336, 518, 650, 656, 662
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	4 cut(s)	211, 412, 427, 480
HpyF10VI	GCNNNNNNNGC	2 cut(s)	172, 737
HpyF3I	CTNAG	1 cut(s)	741
HpySE526I	ACGT	1 cut(s)	150
Hsp92I	GRCGYC	2 cut(s)	150, 533
HspAI	GCGC	2 cut(s)	380, 533
KasI	GGCGCC	1 cut(s)	532
Ksp22I	TGATCA	2 cut(s)	799, 853
Kzo9I	GATC	5 cut(s)	27, 310, 799, 817, 853
LmnI	GCTCC	2 cut(s)	172, 436
LweI	GCATC	2 cut(s)	399, 454
MaeI	CTAG	3 cut(s)	231, 359, 384
MaeII	ACGT	1 cut(s)	150
MaeIII	GTNAC	3 cut(s)	298, 650, 656
MalI	GATC	5 cut(s)	29, 312, 801, 819, 855
MboI	GATC	5 cut(s)	27, 310, 799, 817, 853
MboII	GAAGA	5 cut(s)	83, 454, 560, 681, 881
MflI	RGATCY	1 cut(s)	817
MluCI	AATT	6 cut(s)	235, 328, 597, 793, 838, 881
Mly113I	GGCGCC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	322
MnlI	CCTC	9 cut(s)	67, 95, 163, 427, 538, 620, 703, 730, 780
Mph1103I	ATGCAT	1 cut(s)	414
MseI	TTAA	4 cut(s)	540, 633, 645, 885
MspA1I	CMGCKG	2 cut(s)	14, 859
MspI	CCGG	4 cut(s)	167, 180, 201, 461
MspR9I	CCNGG	2 cut(s)	48, 180
MvaI	CCWGG	1 cut(s)	48
MwoI	GCNNNNNNNGC	2 cut(s)	172, 737
NarI	GGCGCC	1 cut(s)	533
NciI	CCSGG	1 cut(s)	180
NdeII	GATC	5 cut(s)	27, 310, 799, 817, 853
NlaIV	GGNNCC	4 cut(s)	53, 507, 534, 819
NsiI	ATGCAT	1 cut(s)	414
NspI	RCATGY	2 cut(s)	754, 772
PagI	TCATGA	2 cut(s)	717, 757
PceI	AGGCCT	1 cut(s)	790
PciI	ACATGT	1 cut(s)	750
PfeI	GAWTC	3 cut(s)	57, 391, 872
PflFI	GACNNNGTC	1 cut(s)	504
PluTI	GGCGCC	1 cut(s)	536
PscI	ACATGT	1 cut(s)	750
Psp6I	CCWGG	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	46
PspN4I	GGNNCC	4 cut(s)	53, 507, 534, 819
PspPI	GGNCC	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	817
PsyI	GACNNNGTC	1 cut(s)	504
PvuII	CAGCTG	1 cut(s)	859
RsaI	GTAC	2 cut(s)	245, 459
RsaNI	GTAC	2 cut(s)	244, 458
SaqAI	TTAA	4 cut(s)	540, 633, 645, 885
Sau3AI	GATC	5 cut(s)	27, 310, 799, 817, 853
Sau96I	GGNCC	1 cut(s)	506
ScrFI	CCNGG	2 cut(s)	48, 180
SfaNI	GCATC	2 cut(s)	399, 454
SfoI	GGCGCC	1 cut(s)	534
SinI	GGWCC	1 cut(s)	506
SmlI	CTYRAG	1 cut(s)	784
SmoI	CTYRAG	1 cut(s)	784
Sse9I	AATT	6 cut(s)	235, 328, 597, 793, 838, 881
SseBI	AGGCCT	1 cut(s)	790
SsiI	CCGC	1 cut(s)	14
SspDI	GGCGCC	1 cut(s)	532
SspMI	CTAG	3 cut(s)	231, 359, 384
StuI	AGGCCT	1 cut(s)	790
StyD4I	CCNGG	2 cut(s)	46, 178
TaaI	ACNGT	5 cut(s)	336, 518, 650, 656, 662
TaiI	ACGT	1 cut(s)	153
TasI	AATT	6 cut(s)	235, 328, 597, 793, 838, 881
TfiI	GAWTC	3 cut(s)	57, 391, 872
Tru1I	TTAA	4 cut(s)	540, 633, 645, 885
Tru9I	TTAA	4 cut(s)	540, 633, 645, 885
TscAI	CASTG	1 cut(s)	591
TspDTI	ATGAA	5 cut(s)	582, 687, 706, 734, 774
TspRI	CASTG	1 cut(s)	591
Tth111I	GACNNNGTC	1 cut(s)	504
VpaK11BI	GGWCC	1 cut(s)	506
XceI	RCATGY	2 cut(s)	754, 772
XcmI	CCANNNNNNNNNTGG	1 cut(s)	828
XmiI	GTMKAC	2 cut(s)	153, 419
XspI	CTAG	3 cut(s)	231, 359, 384
ZraI	GACGTC	1 cut(s)	151
Zsp2I	ATGCAT	1 cut(s)	414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.