Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002947

Physical Location & Seq

Genomic Coordinates Forward (+)

37658051 .. 37661901

Gene Structure 3851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00195380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGTCTCAGGAGACGACTTGGCGTCCGCCTTCTGCGACGGCCACTTTTGGCAGCCGGGGTTTCGGTTCCATCCCACCGACGAGGAACTCGTCCTCTACTATCTCAAGCGGAAGATCTGCAAGAAGAGGCTCAAGCTTAACGTCATCGCCGAGACCGACGTCTATAAGTGGGACCCTGAGGAACTTCCTGGATTGTCTTTATTGAAAACTGGAGACAGGCAATGGTTCTTTTTCAGTCCGAGAGATCGGAAGTACCCTAATGGGGGAAGATCTAACAGGGCAACCAGACATGGGTATTGGAAAGCAACTGGAAAGGATCGCAACATTTCCTGTTATAACCGATCAGTTGGACTGAAGAAGACCTTAGTTTTCTATAAAGGCCGTGCACCTACTGGGGAGCGCACTGATTGGGTGATGCATGAGTATACCTTGGATGAGGAGGAGTTAAAGAGATGCCAGAATGTACAGGAATATTATGCTCTTTACAAAGTTTTCAAGAAAAGTGGACCTGGTCCTAAAAATGGTGAGCAATATGGGGCGCCATTTAGAGAAGAAGATTGGGCTGATGATGAATGCCCGATAATAAATGGCCCTGCTGATAGGGAAATCTCAGTTGAGCAAGTTGGAGAGCTTGCTGCTAATTATAATGTGAAACCTTTTGGAGAAATTCCATTGAAGCAAGTTGAAGAGATTACTGCTAATGGTTATGTGAACGTTAACAGCGAAGTCCATTCTACAATAGATGACTTGGAAGAGTTCATGAAACAGATTGCTGATGACGCTGTGCTTGACCTGCCACAGTTTAATGATCATGTTCACACCCTATCTCAGGTTGTTAGCGAAGAAGAAACACAAAGTACTGTGGTGGATCTGTACTCCAGTGAAGTTAAATGCCCACAATCGATTACAACTTTTGATCCAAGTGGTCAGCAGGGCAATGCACATGCATGCTTTGACTTCACACAGTCAGCTACTTCACAGATGCAACTGTACGAGGCATCTGAAGCATCTGCTTCTGACGTTCATCAACCGGAGCCTTTCACTCCCATACTACGTGAGGAGGACTTCCTGGAGATGGATGATCTCCTGGGTCCTGAACCTACTGTTTCAAACACTGGGAATTCTGGGGTAACTTGCAGTTTGATGAGTTGGATGGATTTGACTTGTTCCATGATGCGGCCATGTTTTTCAATGACATGGGGCCCATTGAACAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

405

Amino Acids

46.06

Weight (kDa)

4.83

Isoelectric Point (pI)

43.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	19 - 144	5.1e-47	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34180 AT1G34180 AT1G34180 AT1G34180 AT1G34190
fragaria_vesca	FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_6g07970
malus_domestica	MD05G1037700.v1.1 MD10G1041500.v1.1
prunus_persica	Prupe.8G045800_v2.0.a1 Prupe.8G045800_v2.0.a1
pyrus_communis	pycom05g02790 pycom10g02860
rosa_chinensis	RchiOBHm_Chr3g0457681 RchiOBHm_Chr6g0273431
rosa_laevigata	RLG00000013619 RLG00000025196
rosa_multiflora	Rmu_co8212274.1_g000001 Rmu_sc0005891.1_g000016 Rmu_sc0007395.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421580 Rroxscaffold_7G00195380
rosa_rugosa	Rorug03G0022500 Rorug06G0074700
rosa_samantha	Rh3AG083200 Rh3BG085700 Rh3CG086000 Rh3DG086600 Rh6AG189800 Rh6BG193300 Rh6CG193000 Rh6DG184500
rosa_wichuraiana	Rw3G007120 Rw6G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	336, 645
AatII	GACGTC	1 cut(s)	162
Acc36I	ACCTGC	1 cut(s)	801
AccB1I	GGYRCC	1 cut(s)	538
AccI	GTMKAC	1 cut(s)	425
AciI	CCGC	3 cut(s)	27, 109, 1177
AclI	AACGTT	1 cut(s)	714
AclWI	GGATC	3 cut(s)	324, 876, 911
AcoI	YGGCCR	2 cut(s)	40, 1178
AcsI	RAATTY	2 cut(s)	666, 1120
AcuI	CTGAAG	2 cut(s)	374, 1023
AcyI	GRCGYC	3 cut(s)	23, 159, 539
AfaI	GTAC	5 cut(s)	254, 465, 859, 875, 992
AfiI	CCNNNNNNNGG	7 cut(s)	262, 263, 291, 521, 829, 1075, 1176
AgsI	TTSAA	7 cut(s)	205, 496, 676, 686, 1110, 1191, 1210
AhdI	GACNNNNNGTC	1 cut(s)	22
AjnI	CCWGG	4 cut(s)	187, 508, 1068, 1086
AluBI	AGCT	3 cut(s)	136, 631, 971
AluI	AGCT	3 cut(s)	136, 631, 971
Alw21I	GWGCWC	1 cut(s)	388
Alw26I	GTCTC	4 cut(s)	6, 10, 146, 207
Alw44I	GTGCAC	1 cut(s)	384
AlwI	GGATC	3 cut(s)	324, 876, 911
AoxI	GGCC	5 cut(s)	40, 379, 589, 1178, 1201
ApaI	GGGCCC	1 cut(s)	1205
ApaLI	GTGCAC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	52, 635
ApoI	RAATTY	2 cut(s)	666, 1120
AspLEI	GCGC	2 cut(s)	402, 541
AspS9I	GGNCC	7 cut(s)	172, 506, 512, 590, 1091, 1201, 1202
AsuC2I	CCSGG	1 cut(s)	57
AsuHPI	GGTGA	2 cut(s)	424, 536
AvaII	GGWCC	4 cut(s)	172, 506, 512, 1091
AxyI	CCTNAGG	1 cut(s)	177
BaeGI	GKGCMC	2 cut(s)	388, 1205
BanI	GGYRCC	1 cut(s)	538
BanII	GRGCYC	1 cut(s)	1205
BbsI	GAAGAC	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	388
BbvI	GCAGC	2 cut(s)	64, 622
BccI	CCATC	3 cut(s)	78, 1069, 1147
BceAI	ACGGC	2 cut(s)	55, 366
BciT130I	CCWGG	4 cut(s)	189, 510, 1070, 1088
BclI	TGATCA	1 cut(s)	808
BcnI	CCSGG	1 cut(s)	57
BcoDI	GTCTC	4 cut(s)	6, 10, 146, 207
BfoI	RGCGCY	1 cut(s)	542
BfuAI	ACCTGC	1 cut(s)	801
BglII	AGATCT	2 cut(s)	114, 269
BisI	GCNGC	3 cut(s)	53, 636, 1178
BlsI	GCNGC	3 cut(s)	54, 637, 1179
BmcAI	AGTACT	1 cut(s)	859
Bme1390I	CCNGG	5 cut(s)	57, 189, 510, 1070, 1088
Bme18I	GGWCC	4 cut(s)	172, 506, 512, 1091
BmeRI	GACNNNNNGTC	1 cut(s)	22
BmgT120I	GGNCC	7 cut(s)	172, 506, 512, 590, 1091, 1201, 1202
BmiI	GGNNCC	8 cut(s)	68, 173, 174, 540, 1035, 1092, 1202, 1203
BmrFI	CCNGG	5 cut(s)	57, 189, 510, 1070, 1088
BmrI	ACTGGG	2 cut(s)	402, 1125
BmsI	GCATC	6 cut(s)	405, 443, 972, 1007, 1016, 1164
BmuI	ACTGGG	2 cut(s)	402, 1125
BoxI	GACNNNNGTC	1 cut(s)	158
BpiI	GAAGAC	1 cut(s)	365
BpmI	CTGGAG	3 cut(s)	231, 862, 1091
BpuEI	CTTGAG	2 cut(s)	89, 116
BpuMI	CCSGG	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	902
BsaAI	YACGTR	1 cut(s)	1055
BsaHI	GRCGYC	3 cut(s)	23, 159, 539
BsaI	GGTCTC	2 cut(s)	10, 146
BsaJI	CCNNGG	3 cut(s)	56, 429, 1087
BsaWI	WCCGGW	1 cut(s)	1030
Bsc4I	CCNNNNNNNGG	7 cut(s)	262, 263, 291, 521, 829, 1075, 1176
Bse1I	ACTGG	5 cut(s)	214, 313, 397, 879, 1120
Bse21I	CCTNAGG	1 cut(s)	177
Bse3DI	GCAATG	2 cut(s)	227, 943
BseBI	CCWGG	4 cut(s)	189, 510, 1070, 1088
BseCI	ATCGAT	1 cut(s)	902
BseDI	CCNNGG	3 cut(s)	56, 429, 1087
BseGI	GGATG	4 cut(s)	70, 439, 1084, 1158
BseLI	CCNNNNNNNGG	7 cut(s)	262, 263, 291, 521, 829, 1075, 1176
BseMI	GCAATG	2 cut(s)	227, 943
BseMII	CTCAG	4 cut(s)	21, 168, 624, 842
BseNI	ACTGG	5 cut(s)	214, 313, 397, 879, 1120
BseRI	GAGGAG	3 cut(s)	452, 455, 1073
BseSI	GKGCMC	2 cut(s)	388, 1205
BseXI	GCAGC	2 cut(s)	64, 622
BshFI	GGCC	5 cut(s)	42, 381, 591, 1180, 1203
BshNI	GGYRCC	1 cut(s)	538
BshVI	ATCGAT	1 cut(s)	902
BsiHKAI	GWGCWC	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	56, 1031
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	7 cut(s)	262, 263, 291, 521, 829, 1075, 1176
BsmAI	GTCTC	4 cut(s)	6, 10, 146, 207
BsmBI	CGTCTC	1 cut(s)	6
BsmFI	GGGAC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	578
BsnI	GGCC	5 cut(s)	42, 381, 591, 1180, 1203
Bso31I	GGTCTC	2 cut(s)	10, 146
Bsp120I	GGGCCC	1 cut(s)	1201
Bsp1286I	GDGCHC	2 cut(s)	388, 1205
Bsp1407I	TGTACA	1 cut(s)	463
Bsp143I	GATC	9 cut(s)	114, 244, 269, 316, 341, 808, 868, 916, 1081
BspACI	CCGC	3 cut(s)	27, 109, 1177
BspANI	GGCC	5 cut(s)	42, 381, 591, 1180, 1203
BspCNI	CTCAG	4 cut(s)	20, 169, 623, 841
BspDI	ATCGAT	1 cut(s)	902
BspHI	TCATGA	1 cut(s)	759
BspLI	GGNNCC	8 cut(s)	68, 173, 174, 540, 1035, 1092, 1202, 1203
BspMI	ACCTGC	1 cut(s)	801
BspPI	GGATC	3 cut(s)	324, 876, 911
BspT107I	GGYRCC	1 cut(s)	538
BspTNI	GGTCTC	2 cut(s)	10, 146
BsrDI	GCAATG	2 cut(s)	227, 943
BsrGI	TGTACA	1 cut(s)	463
BsrI	ACTGG	5 cut(s)	214, 313, 397, 879, 1120
BssECI	CCNNGG	3 cut(s)	56, 429, 1087
BssMI	GATC	9 cut(s)	114, 244, 269, 316, 341, 808, 868, 916, 1081
BssNAI	GTATAC	1 cut(s)	426
BssNI	GRCGYC	3 cut(s)	23, 159, 539
BssT1I	CCWWGG	1 cut(s)	429
Bst1107I	GTATAC	1 cut(s)	426
Bst2UI	CCWGG	4 cut(s)	189, 510, 1070, 1088
Bst4CI	ACNGT	5 cut(s)	801, 862, 966, 990, 1105
Bst6I	CTCTTC	3 cut(s)	119, 681, 747
BstACI	GRCGYC	3 cut(s)	23, 159, 539
BstAUI	TGTACA	1 cut(s)	463
BstBAI	YACGTR	1 cut(s)	1055
BstC8I	GCNNGC	2 cut(s)	633, 949
BstDEI	CTNAG	5 cut(s)	7, 177, 364, 610, 828
BstENI	CCTNNNNNAGG	1 cut(s)	827
BstF5I	GGATG	4 cut(s)	70, 439, 1084, 1158
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	2 cut(s)	402, 541
BstKTI	GATC	9 cut(s)	117, 247, 272, 319, 344, 811, 871, 919, 1084
BstMAI	GTCTC	4 cut(s)	6, 10, 146, 207
BstMBI	GATC	9 cut(s)	114, 244, 269, 316, 341, 808, 868, 916, 1081
BstMWI	GCNNNNNNNGC	3 cut(s)	779, 793, 1004
BstNI	CCWGG	4 cut(s)	189, 510, 1070, 1088
BstNSI	RCATGY	2 cut(s)	947, 951
BstPAI	GACNNNNGTC	1 cut(s)	158
BstSCI	CCNGG	5 cut(s)	55, 187, 508, 1068, 1086
BstSLI	GKGCMC	2 cut(s)	388, 1205
BstV1I	GCAGC	2 cut(s)	64, 622
BstV2I	GAAGAC	1 cut(s)	365
BstX2I	RGATCY	3 cut(s)	114, 269, 868
BstYI	RGATCY	3 cut(s)	114, 269, 868
BstZ17I	GTATAC	1 cut(s)	426
Bsu15I	ATCGAT	1 cut(s)	902
Bsu36I	CCTNAGG	1 cut(s)	177
BsuRI	GGCC	5 cut(s)	42, 381, 591, 1180, 1203
BsuTUI	ATCGAT	1 cut(s)	902
BtgZI	GCGATG	1 cut(s)	130
BtsCI	GGATG	4 cut(s)	70, 439, 1084, 1158
BtsIMutI	CAGTG	3 cut(s)	402, 886, 1113
BveI	ACCTGC	1 cut(s)	801
Cac8I	GCNNGC	2 cut(s)	633, 949
CciI	TCATGA	1 cut(s)	759
CfoI	GCGC	2 cut(s)	402, 541
Cfr13I	GGNCC	7 cut(s)	172, 506, 512, 590, 1091, 1201, 1202
ClaI	ATCGAT	1 cut(s)	902
CseI	GACGC	2 cut(s)	12, 788
CsiI	ACCWGGT	1 cut(s)	508
Csp6I	GTAC	5 cut(s)	253, 464, 858, 874, 991
CspCI	CAANNNNNGTGG	2 cut(s)	484, 519
CviAII	CATG	9 cut(s)	290, 419, 760, 812, 944, 948, 1171, 1182, 1197
CviQI	GTAC	5 cut(s)	253, 464, 858, 874, 991
DdeI	CTNAG	5 cut(s)	7, 177, 364, 610, 828
DinI	GGCGCC	1 cut(s)	540
DpnI	GATC	9 cut(s)	116, 246, 271, 318, 343, 810, 870, 918, 1083
DpnII	GATC	9 cut(s)	114, 244, 269, 316, 341, 808, 868, 916, 1081
DriI	GACNNNNNGTC	1 cut(s)	22
EaeI	YGGCCR	2 cut(s)	40, 1178
Eam1104I	CTCTTC	3 cut(s)	119, 681, 747
Eam1105I	GACNNNNNGTC	1 cut(s)	22
EarI	CTCTTC	3 cut(s)	119, 681, 747
EciI	GGCGGA	1 cut(s)	16
Eco130I	CCWWGG	1 cut(s)	429
Eco24I	GRGCYC	1 cut(s)	1205
Eco31I	GGTCTC	2 cut(s)	10, 146
Eco47I	GGWCC	4 cut(s)	172, 506, 512, 1091
Eco57I	CTGAAG	2 cut(s)	374, 1023
Eco81I	CCTNAGG	1 cut(s)	177
EcoNI	CCTNNNNNAGG	1 cut(s)	827
EcoO109I	RGGNCCY	3 cut(s)	172, 1091, 1201
EcoRI	GAATTC	1 cut(s)	1120
EcoRII	CCWGG	4 cut(s)	187, 508, 1068, 1086
EcoT14I	CCWWGG	1 cut(s)	429
EcoT22I	ATGCAT	2 cut(s)	420, 949
EcoT38I	GRGCYC	1 cut(s)	1205
EgeI	GGCGCC	1 cut(s)	540
EheI	GGCGCC	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	429
Esp3I	CGTCTC	1 cut(s)	6
FaeI	CATG	9 cut(s)	293, 422, 763, 815, 947, 951, 1174, 1185, 1200
FalI	AAGNNNNNCTT	2 cut(s)	347, 379
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	9 cut(s)	289, 418, 759, 811, 943, 947, 1170, 1181, 1196
FbaI	TGATCA	1 cut(s)	808
FblI	GTMKAC	1 cut(s)	425
Fnu4HI	GCNGC	3 cut(s)	53, 636, 1178
FokI	GGATG	4 cut(s)	57, 446, 1091, 1165
FriOI	GRGCYC	1 cut(s)	1205
Fsp4HI	GCNGC	3 cut(s)	53, 636, 1178
GlaI	GCGC	2 cut(s)	401, 540
GluI	GCNGC	3 cut(s)	53, 636, 1178
GsuI	CTGGAG	3 cut(s)	231, 862, 1091
HaeII	RGCGCY	1 cut(s)	542
HaeIII	GGCC	5 cut(s)	42, 381, 591, 1180, 1203
HapII	CCGG	2 cut(s)	56, 1031
HgaI	GACGC	2 cut(s)	12, 788
HhaI	GCGC	2 cut(s)	402, 541
Hin1I	GRCGYC	3 cut(s)	23, 159, 539
Hin1II	CATG	9 cut(s)	293, 422, 763, 815, 947, 951, 1174, 1185, 1200
Hin6I	GCGC	2 cut(s)	400, 539
HinP1I	GCGC	2 cut(s)	400, 539
HincII	GTYRAC	1 cut(s)	718
HindII	GTYRAC	1 cut(s)	718
HindIII	AAGCTT	1 cut(s)	134
HpaI	GTTAAC	1 cut(s)	718
HpaII	CCGG	2 cut(s)	56, 1031
HphI	GGTGA	2 cut(s)	424, 536
Hpy166II	GTNNAC	6 cut(s)	386, 426, 506, 712, 718, 817
Hpy188I	TCNGA	4 cut(s)	240, 249, 1003, 1018
Hpy188III	TCNNGA	4 cut(s)	9, 496, 760, 1094
Hpy8I	GTNNAC	6 cut(s)	386, 426, 506, 712, 718, 817
Hpy99I	CGWCG	3 cut(s)	41, 83, 161
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	5 cut(s)	801, 862, 966, 990, 1105
HpyCH4IV	ACGT	5 cut(s)	141, 159, 714, 1020, 1054
HpyCH4V	TGCA	7 cut(s)	120, 386, 418, 941, 947, 985, 1137
HpyF10VI	GCNNNNNNNGC	3 cut(s)	779, 793, 1004
HpyF3I	CTNAG	5 cut(s)	7, 177, 364, 610, 828
HpySE526I	ACGT	5 cut(s)	141, 159, 714, 1020, 1054
Hsp92I	GRCGYC	3 cut(s)	23, 159, 539
Hsp92II	CATG	9 cut(s)	293, 422, 763, 815, 947, 951, 1174, 1185, 1200
HspAI	GCGC	2 cut(s)	400, 539
KasI	GGCGCC	1 cut(s)	538
KflI	GGGWCCC	1 cut(s)	172
Ksp22I	TGATCA	1 cut(s)	808
KspAI	GTTAAC	1 cut(s)	718
Kzo9I	GATC	9 cut(s)	114, 244, 269, 316, 341, 808, 868, 916, 1081
LmnI	GCTCC	2 cut(s)	397, 1033
Lsp1109I	GCAGC	2 cut(s)	64, 622
LweI	GCATC	6 cut(s)	405, 443, 972, 1007, 1016, 1164
MabI	ACCWGGT	1 cut(s)	508
MaeII	ACGT	5 cut(s)	141, 159, 714, 1020, 1054
MaeIII	GTNAC	1 cut(s)	1129
MalI	GATC	9 cut(s)	116, 246, 271, 318, 343, 810, 870, 918, 1083
MboI	GATC	9 cut(s)	114, 244, 269, 316, 341, 808, 868, 916, 1081
MflI	RGATCY	3 cut(s)	114, 269, 868
MhlI	GDGCHC	2 cut(s)	388, 1205
MluCI	AATT	3 cut(s)	640, 666, 1120
Mly113I	GGCGCC	1 cut(s)	539
MmeI	TCCRAC	3 cut(s)	328, 604, 1130
MnlI	CCTC	9 cut(s)	76, 104, 120, 172, 430, 433, 988, 1051, 1054
Mph1103I	ATGCAT	2 cut(s)	420, 949
MseI	TTAA	5 cut(s)	138, 446, 717, 804, 888
MslI	CAYNNNNRTG	1 cut(s)	946
MspI	CCGG	2 cut(s)	56, 1031
MspR9I	CCNGG	5 cut(s)	57, 189, 510, 1070, 1088
Mva1269I	GAATGC	1 cut(s)	578
MvaI	CCWGG	4 cut(s)	189, 510, 1070, 1088
MwoI	GCNNNNNNNGC	3 cut(s)	779, 793, 1004
NarI	GGCGCC	1 cut(s)	539
NciI	CCSGG	1 cut(s)	57
NdeII	GATC	9 cut(s)	114, 244, 269, 316, 341, 808, 868, 916, 1081
NlaIII	CATG	9 cut(s)	293, 422, 763, 815, 947, 951, 1174, 1185, 1200
NlaIV	GGNNCC	8 cut(s)	68, 173, 174, 540, 1035, 1092, 1202, 1203
NmeAIII	GCCGAG	1 cut(s)	175
NsiI	ATGCAT	2 cut(s)	420, 949
NspI	RCATGY	2 cut(s)	947, 951
PaeI	GCATGC	1 cut(s)	951
PagI	TCATGA	1 cut(s)	759
PcsI	WCGNNNNNNNCGW	4 cut(s)	87, 147, 153, 720
PctI	GAATGC	1 cut(s)	578
PflFI	GACNNNGTC	1 cut(s)	510
PfoI	TCCNGGA	2 cut(s)	187, 1068
PkrI	GCNGC	3 cut(s)	54, 637, 1179
PluTI	GGCGCC	1 cut(s)	542
Ppu21I	YACGTR	1 cut(s)	1055
PpuMI	RGGWCCY	2 cut(s)	172, 1091
PshAI	GACNNNNGTC	1 cut(s)	158
PsiI	TTATAA	2 cut(s)	336, 645
Psp1406I	AACGTT	1 cut(s)	714
Psp5II	RGGWCCY	2 cut(s)	172, 1091
Psp6I	CCWGG	4 cut(s)	187, 508, 1068, 1086
PspGI	CCWGG	4 cut(s)	187, 508, 1068, 1086
PspN4I	GGNNCC	8 cut(s)	68, 173, 174, 540, 1035, 1092, 1202, 1203
PspOMI	GGGCCC	1 cut(s)	1201
PspPI	GGNCC	7 cut(s)	172, 506, 512, 590, 1091, 1201, 1202
PspPPI	RGGWCCY	2 cut(s)	172, 1091
PsuI	RGATCY	3 cut(s)	114, 269, 868
PsyI	GACNNNGTC	1 cut(s)	510
RsaI	GTAC	5 cut(s)	254, 465, 859, 875, 992
RsaNI	GTAC	5 cut(s)	253, 464, 858, 874, 991
RseI	CAYNNNNRTG	1 cut(s)	946
SaqAI	TTAA	5 cut(s)	138, 446, 717, 804, 888
SatI	GCNGC	3 cut(s)	53, 636, 1178
Sau3AI	GATC	9 cut(s)	114, 244, 269, 316, 341, 808, 868, 916, 1081
Sau96I	GGNCC	7 cut(s)	172, 506, 512, 590, 1091, 1201, 1202
ScaI	AGTACT	1 cut(s)	859
ScrFI	CCNGG	5 cut(s)	57, 189, 510, 1070, 1088
SduI	GDGCHC	2 cut(s)	388, 1205
SexAI	ACCWGGT	1 cut(s)	508
SfaNI	GCATC	6 cut(s)	405, 443, 972, 1007, 1016, 1164
SfoI	GGCGCC	1 cut(s)	540
SinI	GGWCC	4 cut(s)	172, 506, 512, 1091
SmiMI	CAYNNNNRTG	1 cut(s)	946
SmlI	CTYRAG	2 cut(s)	104, 131
SmoI	CTYRAG	2 cut(s)	104, 131
SphI	GCATGC	1 cut(s)	951
Sse9I	AATT	3 cut(s)	640, 666, 1120
SsiI	CCGC	3 cut(s)	27, 109, 1177
SspDI	GGCGCC	1 cut(s)	538
SspI	AATATT	1 cut(s)	473
StyD4I	CCNGG	5 cut(s)	55, 187, 508, 1068, 1086
StyI	CCWWGG	1 cut(s)	429
TaaI	ACNGT	5 cut(s)	801, 862, 966, 990, 1105
TaiI	ACGT	5 cut(s)	144, 162, 717, 1023, 1057
TaqI	TCGA	1 cut(s)	902
TaqII	GACCGA	1 cut(s)	170
TasI	AATT	3 cut(s)	640, 666, 1120
TatI	WGTACW	3 cut(s)	463, 857, 873
TauI	GCSGC	1 cut(s)	1180
Tru1I	TTAA	5 cut(s)	138, 446, 717, 804, 888
Tru9I	TTAA	5 cut(s)	138, 446, 717, 804, 888
TscAI	CASTG	3 cut(s)	409, 886, 1120
TseI	GCWGC	2 cut(s)	52, 635
TspDTI	ATGAA	4 cut(s)	585, 748, 776, 1013
TspRI	CASTG	3 cut(s)	409, 886, 1120
Tth111I	GACNNNGTC	1 cut(s)	510
VneI	GTGCAC	1 cut(s)	384
VpaK11BI	GGWCC	4 cut(s)	172, 506, 512, 1091
XagI	CCTNNNNNAGG	1 cut(s)	827
XapI	RAATTY	2 cut(s)	666, 1120
XceI	RCATGY	2 cut(s)	947, 951
XmiI	GTMKAC	1 cut(s)	425
ZraI	GACGTC	1 cut(s)	160
ZrmI	AGTACT	1 cut(s)	859
Zsp2I	ATGCAT	2 cut(s)	420, 949

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.