Rw3G007120
NAC Family

NAC domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0002947
Physical Location & Seq
Forward (+)
6597159 .. 6599339
2181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G007120.1

Sequence Viewer

Length: 954 bp
ATGGTATCAGCGGACGACTTGGTGATCGTCTTTCGCCAGCAACCAGGGTTCCGATTCCATCCCACCGAAGAGGAACTCGTCCTCTACTATCTGAAACGAAAAATCTGCCACAAAAGGTTCAAGCTCAACATCATTACTGAAACCGACGTCTACAAGTGCGAGCCGGAGGAGCTTCCCGGTTTGTCTTTATTACAAACCGGAGACCTGCAATGGTTCTTTTTCAACCCTAGAAATTGTAAGTACCCTAACAAACCTACAAGAATAAACAGGGCGACCAGACATGGCTACTGGAAAGTTACAGGAAAAGATCGCACGATTACGAATAATTCACGGTCGGTTGGAGTAAAGAAAACCCTAGTTTTCTATACAGGTCGTGCGCCTAGTGGGAATCGCACCGACTGGGTGATGCATGAGTATACTTTGCACGATGAGGAGCTGAAGAGATGTGGGAATGTACCGGATGCTTATGCCCTTTGCAAGGTTTACAAGAAAAGTGGACTGGGTCCAAAAAACGGTGAGCAATATGGGGCGCCGTTTAAGGAGGAAGACTGCTCTGATATGGATGAAGTCCAAGAAACCCCAGTGAAGCAAATTGAAAATCAGATTAGTAGGGCGAAAGGAGGAGTTAATCCAGTCATTAACAGTTACAGTTACAGTGATAGTTATGAAATCCCACATCCTTCTTCGTTTGATAGAGACATGGAGGAGTTCATGAAAAAGATTGCTGGTGAGGCTGAGCATGACATGTATCATGAAGCAGGCATGTTTCTACATGACTTGAGGCCTAATTTTGATCAACATCTATATATGGATCCAGAGCTGGACTGGGGTAATTATATTGACCATGATCAGCTGAAATCAGAAGAATCAAGGAGTAAAACTGAAAGAAGCACAATTTCAACAAGTTACCAGTTTCGTTTCTGGTTCTGGTCCTCATGCAACATGACAACTTGA

Protein Analysis

317

Amino Acids

37.15

Weight (kDa)

6.15

Isoelectric Point (pI)

47.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 15 - 141 2.9e-43 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
Acc36I ACCTGC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 529
AccI GTMKAC 2 cut(s) 150, 416
AciI CCGC 1 cut(s) 11
AclWI GGATC 2 cut(s) 806, 819
AcuI CTGAAG 1 cut(s) 458
AcyI GRCGYC 2 cut(s) 147, 530
AfaI GTAC 2 cut(s) 242, 456
AfiI CCNNNNNNNGG 2 cut(s) 478, 512
AflIII ACRYGT 1 cut(s) 744
AgsI TTSAA 4 cut(s) 121, 223, 596, 900
AjnI CCWGG 1 cut(s) 43
AluBI AGCT 5 cut(s) 124, 172, 436, 820, 853
AluI AGCT 5 cut(s) 124, 172, 436, 820, 853
Alw26I GTCTC 2 cut(s) 195, 690
AlwI GGATC 2 cut(s) 806, 819
AoxI GGCC 1 cut(s) 782
AspLEI GCGC 2 cut(s) 379, 532
AspS9I GGNCC 2 cut(s) 503, 930
AsuC2I CCSGG 1 cut(s) 177
AsuHPI GGTGA 4 cut(s) 34, 415, 527, 740
AvaII GGWCC 2 cut(s) 503, 930
BamHI GGATCC 1 cut(s) 811
BanI GGYRCC 1 cut(s) 529
BbsI GAAGAC 1 cut(s) 552
BccI CCATC 1 cut(s) 66
BceAI ACGGC 1 cut(s) 517
BcgI CGANNNNNNTGC 2 cut(s) 87, 121
BciT130I CCWGG 1 cut(s) 45
BclI TGATCA 2 cut(s) 793, 847
BcnI CCSGG 1 cut(s) 177
BcoDI GTCTC 2 cut(s) 195, 690
BfaI CTAG 3 cut(s) 228, 356, 381
BfoI RGCGCY 1 cut(s) 533
BfuAI ACCTGC 1 cut(s) 213
BlpI GCTNAGC 1 cut(s) 735
Bme1390I CCNGG 2 cut(s) 45, 177
Bme18I GGWCC 2 cut(s) 503, 930
BmgT120I GGNCC 2 cut(s) 503, 930
BmiI GGNNCC 4 cut(s) 50, 504, 531, 813
BmrFI CCNGG 2 cut(s) 45, 177
BmrI ACTGGG 4 cut(s) 409, 509, 575, 835
BmsI GCATC 2 cut(s) 396, 451
BmuI ACTGGG 4 cut(s) 409, 509, 575, 835
BpiI GAAGAC 1 cut(s) 552
Bpu1102I GCTNAGC 1 cut(s) 735
BpuEI CTTGAG 1 cut(s) 799
BpuMI CCSGG 1 cut(s) 177
BsaBI GATNNNNATC 1 cut(s) 798
BsaHI GRCGYC 2 cut(s) 147, 530
BsaI GGTCTC 1 cut(s) 195
BsaJI CCNNGG 1 cut(s) 44
BsaWI WCCGGW 2 cut(s) 197, 457
Bsc4I CCNNNNNNNGG 2 cut(s) 478, 512
Bse1I ACTGG 7 cut(s) 293, 404, 504, 581, 632, 830, 910
Bse3DI GCAATG 1 cut(s) 215
Bse8I GATNNNNATC 1 cut(s) 798
BseBI CCWGG 1 cut(s) 45
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 4 cut(s) 58, 466, 568, 676
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 2 cut(s) 478, 512
BseMI GCAATG 1 cut(s) 215
BseMII CTCAG 1 cut(s) 726
BseNI ACTGG 7 cut(s) 293, 404, 504, 581, 632, 830, 910
BseRI GAGGAG 4 cut(s) 182, 446, 636, 719
Bsh1285I CGRYCG 1 cut(s) 335
BshFI GGCC 1 cut(s) 784
BshNI GGYRCC 1 cut(s) 529
BsiEI CGRYCG 1 cut(s) 335
BsiSI CCGG 4 cut(s) 164, 177, 198, 458
BslI CCNNNNNNNGG 2 cut(s) 478, 512
BsmAI GTCTC 2 cut(s) 195, 690
BsnI GGCC 1 cut(s) 784
Bso31I GGTCTC 1 cut(s) 195
Bsp143I GATC 5 cut(s) 24, 307, 793, 811, 847
Bsp1720I GCTNAGC 1 cut(s) 735
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 784
BspCNI CTCAG 1 cut(s) 727
BspHI TCATGA 2 cut(s) 711, 751
BspLI GGNNCC 4 cut(s) 50, 504, 531, 813
BspMI ACCTGC 1 cut(s) 213
BspPI GGATC 2 cut(s) 806, 819
BspT107I GGYRCC 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 195
BsrDI GCAATG 1 cut(s) 215
BsrI ACTGG 7 cut(s) 293, 404, 504, 581, 632, 830, 910
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 5 cut(s) 24, 307, 793, 811, 847
BssNAI GTATAC 1 cut(s) 417
BssNI GRCGYC 2 cut(s) 147, 530
Bst1107I GTATAC 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 45
Bst4CI ACNGT 5 cut(s) 333, 515, 644, 650, 656
Bst6I CTCTTC 2 cut(s) 63, 434
BstACI GRCGYC 2 cut(s) 147, 530
BstC8I GCNNGC 3 cut(s) 38, 161, 760
BstDEI CTNAG 1 cut(s) 735
BstENI CCTNNNNNAGG 1 cut(s) 476
BstF5I GGATG 4 cut(s) 58, 466, 568, 676
BstH2I RGCGCY 1 cut(s) 533
BstHHI GCGC 2 cut(s) 379, 532
BstKTI GATC 5 cut(s) 27, 310, 796, 814, 850
BstMAI GTCTC 2 cut(s) 195, 690
BstMBI GATC 5 cut(s) 24, 307, 793, 811, 847
BstMCI CGRYCG 1 cut(s) 335
BstMWI GCNNNNNNNGC 2 cut(s) 169, 731
BstNI CCWGG 1 cut(s) 45
BstNSI RCATGY 2 cut(s) 748, 766
BstSCI CCNGG 2 cut(s) 43, 175
BstV2I GAAGAC 1 cut(s) 552
BstX2I RGATCY 1 cut(s) 811
BstYI RGATCY 1 cut(s) 811
BstZ17I GTATAC 1 cut(s) 417
BsuRI GGCC 1 cut(s) 784
BtsCI GGATG 4 cut(s) 58, 466, 568, 676
BtsIMutI CAGTG 2 cut(s) 588, 661
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 3 cut(s) 38, 161, 760
CciI TCATGA 2 cut(s) 711, 751
CfoI GCGC 2 cut(s) 379, 532
Cfr13I GGNCC 2 cut(s) 503, 930
Csp6I GTAC 2 cut(s) 241, 455
CspCI CAANNNNNGTGG 2 cut(s) 475, 510
CviJI RGCY 9 cut(s) 124, 163, 172, 285, 436, 734, 784, 820, 853
CviKI_1 RGCY 9 cut(s) 124, 163, 172, 285, 436, 734, 784, 820, 853
CviQI GTAC 2 cut(s) 241, 455
DdeI CTNAG 1 cut(s) 735
DinI GGCGCC 1 cut(s) 531
DpnI GATC 5 cut(s) 26, 309, 795, 813, 849
DpnII GATC 5 cut(s) 24, 307, 793, 811, 847
Eam1104I CTCTTC 2 cut(s) 63, 434
EarI CTCTTC 2 cut(s) 63, 434
Eco147I AGGCCT 1 cut(s) 784
Eco31I GGTCTC 1 cut(s) 195
Eco47I GGWCC 2 cut(s) 503, 930
Eco57I CTGAAG 1 cut(s) 458
EcoNI CCTNNNNNAGG 1 cut(s) 476
EcoRII CCWGG 1 cut(s) 43
EcoT22I ATGCAT 1 cut(s) 411
EgeI GGCGCC 1 cut(s) 531
EheI GGCGCC 1 cut(s) 531
FbaI TGATCA 2 cut(s) 793, 847
FblI GTMKAC 2 cut(s) 150, 416
FokI GGATG 4 cut(s) 45, 473, 575, 663
FspBI CTAG 3 cut(s) 228, 356, 381
GlaI GCGC 2 cut(s) 378, 531
HaeII RGCGCY 1 cut(s) 533
HaeIII GGCC 1 cut(s) 784
HapII CCGG 4 cut(s) 164, 177, 198, 458
HhaI GCGC 2 cut(s) 379, 532
Hin1I GRCGYC 2 cut(s) 147, 530
Hin6I GCGC 2 cut(s) 377, 530
HinP1I GCGC 2 cut(s) 377, 530
HinfI GANTC 3 cut(s) 54, 388, 866
HpaII CCGG 4 cut(s) 164, 177, 198, 458
HphI GGTGA 4 cut(s) 34, 415, 527, 740
Hpy166II GTNNAC 4 cut(s) 151, 417, 484, 497
Hpy188I TCNGA 5 cut(s) 53, 93, 556, 603, 862
Hpy188III TCNNGA 3 cut(s) 712, 752, 815
Hpy8I GTNNAC 4 cut(s) 151, 417, 484, 497
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 690
HpyCH4III ACNGT 5 cut(s) 333, 515, 644, 650, 656
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 5 cut(s) 208, 409, 424, 477, 939
HpyF10VI GCNNNNNNNGC 2 cut(s) 169, 731
HpyF3I CTNAG 1 cut(s) 735
HpySE526I ACGT 1 cut(s) 147
Hsp92I GRCGYC 2 cut(s) 147, 530
HspAI GCGC 2 cut(s) 377, 530
KasI GGCGCC 1 cut(s) 529
Ksp22I TGATCA 2 cut(s) 793, 847
Kzo9I GATC 5 cut(s) 24, 307, 793, 811, 847
LmnI GCTCC 2 cut(s) 169, 433
LweI GCATC 2 cut(s) 396, 451
MaeI CTAG 3 cut(s) 228, 356, 381
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 4 cut(s) 295, 644, 650, 905
MalI GATC 5 cut(s) 26, 309, 795, 813, 849
MboI GATC 5 cut(s) 24, 307, 793, 811, 847
MboII GAAGA 5 cut(s) 80, 451, 557, 675, 875
MflI RGATCY 1 cut(s) 811
MluCI AATT 6 cut(s) 232, 325, 591, 787, 832, 894
Mly113I GGCGCC 1 cut(s) 530
MmeI TCCRAC 1 cut(s) 319
Mph1103I ATGCAT 1 cut(s) 411
MseI TTAA 3 cut(s) 537, 627, 639
MspA1I CMGCKG 2 cut(s) 11, 853
MspI CCGG 4 cut(s) 164, 177, 198, 458
MspR9I CCNGG 2 cut(s) 45, 177
MvaI CCWGG 1 cut(s) 45
MwoI GCNNNNNNNGC 2 cut(s) 169, 731
NarI GGCGCC 1 cut(s) 530
NciI CCSGG 1 cut(s) 177
NdeII GATC 5 cut(s) 24, 307, 793, 811, 847
NlaIV GGNNCC 4 cut(s) 50, 504, 531, 813
NsiI ATGCAT 1 cut(s) 411
NspI RCATGY 2 cut(s) 748, 766
PagI TCATGA 2 cut(s) 711, 751
PceI AGGCCT 1 cut(s) 784
PciI ACATGT 1 cut(s) 744
PfeI GAWTC 3 cut(s) 54, 388, 866
PflFI GACNNNGTC 1 cut(s) 501
PluTI GGCGCC 1 cut(s) 533
PscI ACATGT 1 cut(s) 744
Psp6I CCWGG 1 cut(s) 43
PspGI CCWGG 1 cut(s) 43
PspN4I GGNNCC 4 cut(s) 50, 504, 531, 813
PspPI GGNCC 2 cut(s) 503, 930
PsuI RGATCY 1 cut(s) 811
PsyI GACNNNGTC 1 cut(s) 501
PvuII CAGCTG 1 cut(s) 853
RsaI GTAC 2 cut(s) 242, 456
RsaNI GTAC 2 cut(s) 241, 455
SaqAI TTAA 3 cut(s) 537, 627, 639
Sau3AI GATC 5 cut(s) 24, 307, 793, 811, 847
Sau96I GGNCC 2 cut(s) 503, 930
ScrFI CCNGG 2 cut(s) 45, 177
SfaNI GCATC 2 cut(s) 396, 451
SfoI GGCGCC 1 cut(s) 531
SinI GGWCC 2 cut(s) 503, 930
SmlI CTYRAG 1 cut(s) 778
SmoI CTYRAG 1 cut(s) 778
Sse9I AATT 6 cut(s) 232, 325, 591, 787, 832, 894
SseBI AGGCCT 1 cut(s) 784
SsiI CCGC 1 cut(s) 11
SspDI GGCGCC 1 cut(s) 529
SspMI CTAG 3 cut(s) 228, 356, 381
StuI AGGCCT 1 cut(s) 784
StyD4I CCNGG 2 cut(s) 43, 175
TaaI ACNGT 5 cut(s) 333, 515, 644, 650, 656
TaiI ACGT 1 cut(s) 150
TasI AATT 6 cut(s) 232, 325, 591, 787, 832, 894
TfiI GAWTC 3 cut(s) 54, 388, 866
Tru1I TTAA 3 cut(s) 537, 627, 639
Tru9I TTAA 3 cut(s) 537, 627, 639
TscAI CASTG 2 cut(s) 588, 661
TspDTI ATGAA 5 cut(s) 579, 681, 700, 728, 768
TspRI CASTG 2 cut(s) 588, 661
Tth111I GACNNNGTC 1 cut(s) 501
VpaK11BI GGWCC 2 cut(s) 503, 930
XagI CCTNNNNNAGG 1 cut(s) 476
XceI RCATGY 2 cut(s) 748, 766
XcmI CCANNNNNNNNNTGG 1 cut(s) 822
XmiI GTMKAC 2 cut(s) 150, 416
XspI CTAG 3 cut(s) 228, 356, 381
ZraI GACGTC 1 cut(s) 148
Zsp2I ATGCAT 1 cut(s) 411
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.