Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0002947

Physical Location & Seq

Genomic Coordinates Reverse (-)

1791746 .. 1796527

Gene Structure 4782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0022500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1281 bp

ATGGCCGACGACCTGTTTGAAGGTCTGCCTCCACCTTCTTCTGCAAACCCTCTTCCCTCTTCTGAGCCTCAAGAACAGCCCAAAGAACCCAAACCAAAGTTCGCTTCTTTCAGCACCAACTCTTCTTCTTCTTCACCTTCTCCTTCTCAAGCTCCAAAACCGGCTCTGAAAAGCGCGTTGAAGAAGCCTAAGGAGCCCTCTGAGCCAAACCCAGTTCTCAAAAGCGCCCTCAAGCGGCCCAAGGAGCCCTCTGAACCAAACCCAGAAGCCACTGTGCCTGGAAAGAAGTTGAGGTTTAAAACCACGACCGATGCCTCAGAGCAACAGGTTATAGAGGCCATGCAGAAGATAGCTTCACATATAAAGAATCCTACAAAGTTTGGGAAGGCTTCAAAGCTTGCCATCCAGCTGATTCAGGCAGGAAGTGTCAAGGTCGAAACCAGTGATTACTTCTTTTCCATACTAGAGGCTGCAATGACATCATCTACCTCTTGCACAGATCCTTCCATACGAGCAGATATCCATGCACTCTTCTCAGCAGCACAAGATGCCTCTGAGTGTCTCAATAAGAAGCAAAAGAATCAGTTAACAACATGGACAATCAGAGCTGTGATGGCAAATGATTTACTCACTGATGACAGCTTCCTGTTTTCAAAAACAGCTGGACAATTAAAAGAAGCAATATCTAATCTGCCAGTTGCAACTGAGGATGATGACAGAGAGGAAGCAGCTGCCCTGGAAGTTGAAACTAAAACAACTGATGAGGATGATCTAATGAAGAAGGACATGACTTCGGATGTACCGGATGAAGAAAATAACGAGAAAGAGTCTGATCCATTTGGGCTAGATGCATTTTTAACTCCAAGCTCTATGAAGAAAGGTGATAAAGTAAAGGGAAAGAAAGATGTAACTCCCAAAGTCAAGGAGGAGGAAGAGACCAAGAGATTCCTCAAGTCACAGAGAGAAGCCTTGGTCCTTTGTTTAGAGATAGCTGCTCGGCGTTATAAAACTCCATGGTGCCAGACAGTTATAGACATATTAGCAAAGCATGCGTTTGATAACATAAGGAGGTTCACATCTGAACAAAGGAATGCCATTGGGAAACTTTGGGCTTCCATACGGGAACAGCATAATCGTAGAAAACAAGGGAAAACAGTTACTGGGAAACTTGACGTGAATGGTTTCGAATGGCTGCAGCAAAAATATGCTAATGAGAAGATCAGCATTCGGCATTCTGTTGGCGGTAGTGGGGATCGTAAAACTGAAATGTGGCTTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

426

Amino Acids

47.22

Weight (kDa)

8.11

Isoelectric Point (pI)

52.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002947)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G34180 AT1G34180 AT1G34180 AT1G34180 AT1G34190
fragaria_vesca	FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_2g12690 FvH4_6g07970
malus_domestica	MD05G1037700.v1.1 MD10G1041500.v1.1
prunus_persica	Prupe.8G045800_v2.0.a1 Prupe.8G045800_v2.0.a1
pyrus_communis	pycom05g02790 pycom10g02860
rosa_chinensis	RchiOBHm_Chr3g0457681 RchiOBHm_Chr6g0273431
rosa_laevigata	RLG00000013619 RLG00000025196
rosa_multiflora	Rmu_co8212274.1_g000001 Rmu_sc0005891.1_g000016 Rmu_sc0007395.1_g000006
rosa_roxburghii	Rroxscaffold_6G00421580 Rroxscaffold_7G00195380
rosa_rugosa	Rorug03G0022500 Rorug06G0074700
rosa_samantha	Rh3AG083200 Rh3BG085700 Rh3CG086000 Rh3DG086600 Rh6AG189800 Rh6BG193300 Rh6CG193000 Rh6DG184500
rosa_wichuraiana	Rw3G007120 Rw6G016520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1005
AccB1I	GGYRCC	1 cut(s)	1017
AccII	CGCG	1 cut(s)	176
AciI	CCGC	2 cut(s)	235, 1242
AclWI	GGATC	3 cut(s)	494, 827, 1260
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	801
AfiI	CCNNNNNNNGG	1 cut(s)	234
AgsI	TTSAA	5 cut(s)	20, 181, 393, 654, 746
AjiI	CACGTC	1 cut(s)	1174
AjnI	CCWGG	2 cut(s)	277, 735
AjuI	GAANNNNNNNTTGG	5 cut(s)	83, 88, 115, 120, 1257
Alw26I	GTCTC	2 cut(s)	566, 929
AlwI	GGATC	3 cut(s)	494, 827, 1260
AlwNI	CAGNNNCTG	1 cut(s)	1160
AoxI	GGCC	3 cut(s)	3, 236, 336
ApeKI	GCWGC	7 cut(s)	470, 539, 728, 731, 992, 1192, 1195
ArsI	GACNNNNNNTTYG	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	1181
AspLEI	GCGC	2 cut(s)	176, 227
AspS9I	GGNCC	2 cut(s)	237, 973
AsuHPI	GGTGA	2 cut(s)	126, 893
AsuII	TTCGAA	1 cut(s)	1185
AvaII	GGWCC	1 cut(s)	973
AxyI	CCTNAGG	1 cut(s)	189
BanI	GGYRCC	1 cut(s)	1017
BanII	GRGCYC	2 cut(s)	198, 249
BbvI	GCAGC	7 cut(s)	457, 551, 718, 740, 979, 1179, 1207
BccI	CCATC	2 cut(s)	410, 607
BciT130I	CCWGG	2 cut(s)	279, 737
BcoDI	GTCTC	2 cut(s)	566, 929
BfaI	CTAG	2 cut(s)	464, 845
BfmI	CTRYAG	1 cut(s)	1193
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	8 cut(s)	236, 471, 540, 729, 732, 993, 1193, 1196
BlsI	GCNGC	8 cut(s)	237, 472, 541, 730, 733, 994, 1194, 1197
Bme1390I	CCNGG	2 cut(s)	279, 737
Bme18I	GGWCC	1 cut(s)	973
BmgBI	CACGTC	1 cut(s)	1174
BmgT120I	GGNCC	2 cut(s)	237, 973
BmiI	GGNNCC	3 cut(s)	195, 246, 1019
BmrFI	CCNGG	2 cut(s)	279, 737
BmrI	ACTGGG	2 cut(s)	206, 1170
BmsI	GCATC	3 cut(s)	301, 538, 838
BmuI	ACTGGG	2 cut(s)	206, 1170
Bpu14I	TTCGAA	1 cut(s)	1185
BpuEI	CTTGAG	4 cut(s)	54, 132, 215, 935
BsaI	GGTCTC	1 cut(s)	929
BsaJI	CCNNGG	4 cut(s)	240, 735, 969, 1013
BsaWI	WCCGGW	1 cut(s)	802
Bsc4I	CCNNNNNNNGG	1 cut(s)	234
Bse118I	RCCGGY	1 cut(s)	160
Bse1I	ACTGG	4 cut(s)	212, 441, 695, 1165
Bse21I	CCTNAGG	1 cut(s)	189
Bse3DI	GCAATG	1 cut(s)	480
BseBI	CCWGG	2 cut(s)	279, 737
BseDI	CCNNGG	4 cut(s)	240, 735, 969, 1013
BseGI	GGATG	5 cut(s)	402, 715, 772, 802, 811
BseLI	CCNNNNNNNGG	1 cut(s)	234
BseMI	GCAATG	1 cut(s)	480
BseMII	CTCAG	6 cut(s)	54, 192, 330, 546, 549, 696
BseNI	ACTGG	4 cut(s)	212, 441, 695, 1165
BseRI	GAGGAG	1 cut(s)	941
BseXI	GCAGC	7 cut(s)	457, 551, 718, 740, 979, 1179, 1207
Bsh1236I	CGCG	1 cut(s)	176
Bsh1285I	CGRYCG	1 cut(s)	309
BshFI	GGCC	3 cut(s)	5, 238, 338
BshNI	GGYRCC	1 cut(s)	1017
BsiEI	CGRYCG	1 cut(s)	309
BsiSI	CCGG	2 cut(s)	161, 803
BslI	CCNNNNNNNGG	1 cut(s)	234
BsmAI	GTCTC	2 cut(s)	566, 929
BsmI	GAATGC	3 cut(s)	1096, 1224, 1231
BsnI	GGCC	3 cut(s)	5, 238, 338
Bso31I	GGTCTC	1 cut(s)	929
Bsp119I	TTCGAA	1 cut(s)	1185
Bsp1286I	GDGCHC	2 cut(s)	198, 249
Bsp143I	GATC	5 cut(s)	499, 769, 832, 1218, 1252
Bsp19I	CCATGG	1 cut(s)	1013
BspACI	CCGC	2 cut(s)	235, 1242
BspANI	GGCC	3 cut(s)	5, 238, 338
BspCNI	CTCAG	6 cut(s)	55, 193, 329, 547, 548, 697
BspFNI	CGCG	1 cut(s)	176
BspLI	GGNNCC	3 cut(s)	195, 246, 1019
BspMAI	CTGCAG	1 cut(s)	1197
BspPI	GGATC	3 cut(s)	494, 827, 1260
BspT104I	TTCGAA	1 cut(s)	1185
BspT107I	GGYRCC	1 cut(s)	1017
BspTNI	GGTCTC	1 cut(s)	929
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	160
BsrI	ACTGG	4 cut(s)	212, 441, 695, 1165
BssAI	RCCGGY	1 cut(s)	160
BssECI	CCNNGG	4 cut(s)	240, 735, 969, 1013
BssMI	GATC	5 cut(s)	499, 769, 832, 1218, 1252
BssT1I	CCWWGG	3 cut(s)	240, 969, 1013
Bst2UI	CCWGG	2 cut(s)	279, 737
Bst4CI	ACNGT	3 cut(s)	274, 1027, 1156
Bst6I	CTCTTC	5 cut(s)	57, 64, 127, 536, 927
BstAPI	GCANNNNNTGC	2 cut(s)	548, 1049
BstBI	TTCGAA	1 cut(s)	1185
BstC8I	GCNNGC	2 cut(s)	399, 1050
BstDEI	CTNAG	7 cut(s)	63, 189, 201, 316, 535, 555, 705
BstDSI	CCRYGG	1 cut(s)	1013
BstF5I	GGATG	5 cut(s)	402, 715, 772, 802, 811
BstFNI	CGCG	1 cut(s)	176
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	2 cut(s)	176, 227
BstKTI	GATC	5 cut(s)	502, 772, 835, 1221, 1255
BstMAI	GTCTC	2 cut(s)	566, 929
BstMBI	GATC	5 cut(s)	499, 769, 832, 1218, 1252
BstMCI	CGRYCG	1 cut(s)	309
BstMWI	GCNNNNNNNGC	6 cut(s)	193, 202, 244, 548, 614, 1049
BstNI	CCWGG	2 cut(s)	279, 737
BstNSI	RCATGY	1 cut(s)	1052
BstSCI	CCNGG	2 cut(s)	277, 735
BstSFI	CTRYAG	1 cut(s)	1193
BstUI	CGCG	1 cut(s)	176
BstV1I	GCAGC	7 cut(s)	457, 551, 718, 740, 979, 1179, 1207
BstX2I	RGATCY	1 cut(s)	499
BstYI	RGATCY	1 cut(s)	499
Bsu36I	CCTNAGG	1 cut(s)	189
BsuRI	GGCC	3 cut(s)	5, 238, 338
BtgI	CCRYGG	1 cut(s)	1013
BtrI	CACGTC	1 cut(s)	1174
BtsCI	GGATG	5 cut(s)	402, 715, 772, 802, 811
BtsIMutI	CAGTG	3 cut(s)	270, 448, 630
Cac8I	GCNNGC	2 cut(s)	399, 1050
CaiI	CAGNNNCTG	1 cut(s)	1160
CfoI	GCGC	2 cut(s)	176, 227
Cfr10I	RCCGGY	1 cut(s)	160
Cfr13I	GGNCC	2 cut(s)	237, 973
Csp6I	GTAC	1 cut(s)	800
CviAII	CATG	6 cut(s)	340, 524, 594, 787, 1014, 1049
CviQI	GTAC	1 cut(s)	800
DdeI	CTNAG	7 cut(s)	63, 189, 201, 316, 535, 555, 705
DpnI	GATC	5 cut(s)	501, 771, 834, 1220, 1254
DpnII	GATC	5 cut(s)	499, 769, 832, 1218, 1252
DraI	TTTAAA	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	5 cut(s)	57, 64, 127, 536, 927
EarI	CTCTTC	5 cut(s)	57, 64, 127, 536, 927
Eco130I	CCWWGG	3 cut(s)	240, 969, 1013
Eco24I	GRGCYC	2 cut(s)	198, 249
Eco31I	GGTCTC	1 cut(s)	929
Eco32I	GATATC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	973
Eco81I	CCTNAGG	1 cut(s)	189
EcoRII	CCWGG	2 cut(s)	277, 735
EcoRV	GATATC	1 cut(s)	520
EcoT14I	CCWWGG	3 cut(s)	240, 969, 1013
EcoT22I	ATGCAT	1 cut(s)	853
EcoT38I	GRGCYC	2 cut(s)	198, 249
ErhI	CCWWGG	3 cut(s)	240, 969, 1013
FaeI	CATG	6 cut(s)	343, 527, 597, 790, 1017, 1052
FatI	CATG	6 cut(s)	339, 523, 593, 786, 1013, 1048
Fnu4HI	GCNGC	8 cut(s)	236, 471, 540, 729, 732, 993, 1193, 1196
FokI	GGATG	5 cut(s)	389, 722, 779, 809, 818
FriOI	GRGCYC	2 cut(s)	198, 249
Fsp4HI	GCNGC	8 cut(s)	236, 471, 540, 729, 732, 993, 1193, 1196
FspBI	CTAG	2 cut(s)	464, 845
GlaI	GCGC	2 cut(s)	175, 226
GluI	GCNGC	8 cut(s)	236, 471, 540, 729, 732, 993, 1193, 1196
HaeII	RGCGCY	1 cut(s)	228
HaeIII	GGCC	3 cut(s)	5, 238, 338
HapII	CCGG	2 cut(s)	161, 803
HhaI	GCGC	2 cut(s)	176, 227
Hin1II	CATG	6 cut(s)	343, 527, 597, 790, 1017, 1052
Hin6I	GCGC	2 cut(s)	174, 225
HinP1I	GCGC	2 cut(s)	174, 225
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HindIII	AAGCTT	1 cut(s)	395
HinfI	GANTC	5 cut(s)	367, 412, 580, 827, 945
HpaI	GTTAAC	1 cut(s)	588
HpaII	CCGG	2 cut(s)	161, 803
HphI	GGTGA	2 cut(s)	126, 893
Hpy166II	GTNNAC	2 cut(s)	588, 1074
Hpy188III	TCNNGA	1 cut(s)	71
Hpy8I	GTNNAC	2 cut(s)	588, 1074
Hpy99I	CGWCG	1 cut(s)	11
HpyAV	CCTTC	7 cut(s)	14, 45, 147, 153, 379, 513, 775
HpyCH4III	ACNGT	3 cut(s)	274, 1027, 1156
HpyCH4IV	ACGT	1 cut(s)	1173
HpyCH4V	TGCA	8 cut(s)	44, 343, 473, 495, 527, 701, 851, 1195
HpyF10VI	GCNNNNNNNGC	6 cut(s)	193, 202, 244, 548, 614, 1049
HpyF3I	CTNAG	7 cut(s)	63, 189, 201, 316, 535, 555, 705
HpySE526I	ACGT	1 cut(s)	1173
Hsp92II	CATG	6 cut(s)	343, 527, 597, 790, 1017, 1052
HspAI	GCGC	2 cut(s)	174, 225
KspAI	GTTAAC	1 cut(s)	588
Kzo9I	GATC	5 cut(s)	499, 769, 832, 1218, 1252
LmnI	GCTCC	3 cut(s)	157, 193, 244
Lsp1109I	GCAGC	7 cut(s)	457, 551, 718, 740, 979, 1179, 1207
LweI	GCATC	3 cut(s)	301, 538, 838
MaeI	CTAG	2 cut(s)	464, 845
MaeII	ACGT	1 cut(s)	1173
MaeIII	GTNAC	3 cut(s)	907, 954, 1156
MalI	GATC	5 cut(s)	501, 771, 834, 1220, 1254
MboI	GATC	5 cut(s)	499, 769, 832, 1218, 1252
MflI	RGATCY	1 cut(s)	499
MhlI	GDGCHC	2 cut(s)	198, 249
MluCI	AATT	1 cut(s)	668
MlyI	GAGTC	1 cut(s)	836
Mph1103I	ATGCAT	1 cut(s)	853
MroXI	GAANNNNTTC	1 cut(s)	1181
MseI	TTAA	4 cut(s)	297, 587, 671, 857
MspA1I	CMGCKG	3 cut(s)	409, 662, 731
MspI	CCGG	2 cut(s)	161, 803
MspR9I	CCNGG	2 cut(s)	279, 737
Mva1269I	GAATGC	3 cut(s)	1096, 1224, 1231
MvaI	CCWGG	2 cut(s)	279, 737
MvnI	CGCG	1 cut(s)	176
MwoI	GCNNNNNNNGC	6 cut(s)	193, 202, 244, 548, 614, 1049
NcoI	CCATGG	1 cut(s)	1013
NdeII	GATC	5 cut(s)	499, 769, 832, 1218, 1252
NlaIII	CATG	6 cut(s)	343, 527, 597, 790, 1017, 1052
NlaIV	GGNNCC	3 cut(s)	195, 246, 1019
NmeAIII	GCCGAG	1 cut(s)	976
NmuCI	GTSAC	1 cut(s)	954
NsiI	ATGCAT	1 cut(s)	853
NspI	RCATGY	1 cut(s)	1052
NspV	TTCGAA	1 cut(s)	1185
PaeI	GCATGC	1 cut(s)	1052
PctI	GAATGC	3 cut(s)	1096, 1224, 1231
PdmI	GAANNNNTTC	1 cut(s)	1181
PfeI	GAWTC	4 cut(s)	367, 412, 580, 945
PkrI	GCNGC	8 cut(s)	237, 472, 541, 730, 733, 994, 1194, 1197
PleI	GAGTC	1 cut(s)	835
PpsI	GAGTC	1 cut(s)	835
PsiI	TTATAA	1 cut(s)	1005
Psp6I	CCWGG	2 cut(s)	277, 735
PspGI	CCWGG	2 cut(s)	277, 735
PspN4I	GGNNCC	3 cut(s)	195, 246, 1019
PspPI	GGNCC	2 cut(s)	237, 973
PstI	CTGCAG	1 cut(s)	1197
PstNI	CAGNNNCTG	1 cut(s)	1160
PsuI	RGATCY	1 cut(s)	499
PvuII	CAGCTG	3 cut(s)	409, 662, 731
RsaI	GTAC	1 cut(s)	801
RsaNI	GTAC	1 cut(s)	800
SaqAI	TTAA	4 cut(s)	297, 587, 671, 857
SatI	GCNGC	8 cut(s)	236, 471, 540, 729, 732, 993, 1193, 1196
Sau3AI	GATC	5 cut(s)	499, 769, 832, 1218, 1252
Sau96I	GGNCC	2 cut(s)	237, 973
SchI	GAGTC	1 cut(s)	836
ScrFI	CCNGG	2 cut(s)	279, 737
SduI	GDGCHC	2 cut(s)	198, 249
SfaNI	GCATC	3 cut(s)	301, 538, 838
SfcI	CTRYAG	1 cut(s)	1193
SfuI	TTCGAA	1 cut(s)	1185
SinI	GGWCC	1 cut(s)	973
SmlI	CTYRAG	4 cut(s)	69, 147, 230, 950
SmoI	CTYRAG	4 cut(s)	69, 147, 230, 950
SphI	GCATGC	1 cut(s)	1052
Sse9I	AATT	1 cut(s)	668
SsiI	CCGC	2 cut(s)	235, 1242
SspMI	CTAG	2 cut(s)	464, 845
StyD4I	CCNGG	2 cut(s)	277, 735
StyI	CCWWGG	3 cut(s)	240, 969, 1013
TaaI	ACNGT	3 cut(s)	274, 1027, 1156
TaiI	ACGT	1 cut(s)	1176
TaqI	TCGA	2 cut(s)	435, 1185
TaqII	GACCGA	1 cut(s)	323
TasI	AATT	1 cut(s)	668
TauI	GCSGC	1 cut(s)	238
TfiI	GAWTC	4 cut(s)	367, 412, 580, 945
Tru1I	TTAA	4 cut(s)	297, 587, 671, 857
Tru9I	TTAA	4 cut(s)	297, 587, 671, 857
TscAI	CASTG	3 cut(s)	277, 448, 637
TseFI	GTSAC	1 cut(s)	954
TseI	GCWGC	7 cut(s)	470, 539, 728, 731, 992, 1192, 1195
Tsp45I	GTSAC	1 cut(s)	954
TspDTI	ATGAA	3 cut(s)	791, 822, 887
TspRI	CASTG	3 cut(s)	277, 448, 637
VpaK11BI	GGWCC	1 cut(s)	973
XceI	RCATGY	1 cut(s)	1052
XmnI	GAANNNNTTC	1 cut(s)	1181
XspI	CTAG	2 cut(s)	464, 845
Zsp2I	ATGCAT	1 cut(s)	853

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.