Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004237

Physical Location & Seq

Genomic Coordinates Reverse (-)

7219576 .. 7221959

Gene Structure 2384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g12001.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGTATCTATTTACCATGTTTTGCTACGTTGAGTACGAAATAGAAAGTTACAACGCTAAAGGTAGTAGGTACCTAGGCTCTTCTGCGATGGCTACTAAGACATCTGATGATCATCGAGTCAAGAGAATTCGTACATGCCATTCTCTCTCATGCATAACCAACAAAAACGAAGACAATCAAATCTTCAAACCACAGCATGTCTGTAACTCACACAGTTCTGGAAGTTTGTCAACAACTGGCGGGGATGAATATAAACTGAAGCCAGCTTATGATTTGACCATTCTTGATGATATGAGAAAATATGGTGCATCCTGCAAAACTTATCCTGCCCCCTCCTTAATGGATACCGATGACCTAACCCATGGTTGGACCATTGTGGATGATATGGAACAATATGGGGACTCCTGCAAGGACTTCTCTTCTGGCTTAACTGGTAAAAATGATTCTGCCCATGGATCAAACAAGTTAACTCCACAACACTCGAACCTTTGTAATGCAACGTCTACAAATGTTAGTGATTTAGTCGATAGTCCAGATTCTTCGAGTTTAGACGACTGTGATTCAGAACTCGAAAAAGCTTTGCGGTTATTGATTTCCAGTGATGATTATCTTCCAAGATCTAGTTCTTCAGCTAGCAGTAGAAATTCAAAGGCTGGTGAAATACTGAGATTGGTATTCTCAGATGATCAGTATTATCGAAAGTCTGTTCCCATTGGGCGTGGTTTTCAGGCTGAAGTTCCTGAGTGGACAGGTCCTGTCAACAGGAAAAATCGTGGCGCTGGTGATGATTCAAAGAAGTGGTTGGGCACTCAAATGTACCCCATCAAACGGTTTCAAAATGCAGGAGCTGATACAAAATCTATTGGGAAAGGGAGACCCGACTCTTGTTCTTGTGTCTCTCCTGGTTCTGTTGGTTGTGTCAAACACCACATTGATGAAGCGAGACTCCATTTGCAAGCCGAAATTGGTCCTGCATTCCGGACTTGGAAGTTTGATGAAATGGGAGAATTTGCCTCGAAGTCATGGACTTTGAAAGAACAAAGTACCTTCGAATCTCTAGTGAGAAGGAATCCGCTATCAGATGAAGCAAGCTTTTGGAAGCTTGCCTTTAAGCGTTTTCCTAACAAATGCAGGAAAAGCATTGTGAGGTATTACTATAATGTGTTCATACCTAGACGCATGAGCCTCCAAAGTAGGTCTTCTCTTGATGATGAAATTGATAGTGATGATGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELM2

Protein Analysis

412

Amino Acids

46.17

Weight (kDa)

6.38

Isoelectric Point (pI)

47.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004237)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12001 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700
malus_domestica	MD04G1147000.v1.1 MD12G1160300.v1.1
prunus_persica	Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1
pyrus_communis	pycom04g13280 pycom12g15210
rosa_chinensis	RchiOBHm_Chr3g0463841 RchiOBHm_Chr3g0470651
rosa_laevigata	RLG00000024250 RLG00000024752
rosa_multiflora	Rmu_co8471153.1_g000001 Rmu_sc0004796.1_g000007
rosa_roxburghii	Rroxscaffold_6G00410630
rosa_rugosa	Rorug03G0068200 Rorug03G0068300 Rorug03G0111300 Rorug03G0111400
rosa_samantha	Rh3AG125500 Rh3AG161000 Rh3BG129600 Rh3BG185600 Rh3CG132100 Rh3CG175900 Rh3DG189200
rosa_wichuraiana	Rw3G010590 Rw3G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	503
AccIII	TCCGGA	1 cut(s)	978
AciI	CCGC	3 cut(s)	240, 583, 1073
AclWI	GGATC	1 cut(s)	463
AcsI	RAATTY	3 cut(s)	126, 643, 1007
AcuI	CTGAAG	3 cut(s)	278, 612, 753
AfaI	GTAC	5 cut(s)	35, 71, 133, 818, 1045
AfiI	CCNNNNNNNGG	2 cut(s)	366, 828
AgsI	TTSAA	5 cut(s)	187, 648, 792, 836, 1033
AjnI	CCWGG	1 cut(s)	901
AjuI	GAANNNNNNNTTGG	2 cut(s)	607, 639
AluBI	AGCT	6 cut(s)	266, 578, 632, 848, 1092, 1102
AluI	AGCT	6 cut(s)	266, 578, 632, 848, 1092, 1102
Alw26I	GTCTC	3 cut(s)	868, 901, 937
AlwI	GGATC	1 cut(s)	463
AlwNI	CAGNNNCTG	2 cut(s)	755, 848
Aor13HI	TCCGGA	1 cut(s)	978
ApoI	RAATTY	3 cut(s)	126, 643, 1007
Asp718I	GGTACC	1 cut(s)	69
AspA2I	CCTAGG	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	779
AspS9I	GGNCC	3 cut(s)	369, 752, 968
AsuHPI	GGTGA	2 cut(s)	668, 794
AsuII	TTCGAA	1 cut(s)	1050
AsuNHI	GCTAGC	1 cut(s)	632
AvaII	GGWCC	3 cut(s)	369, 752, 968
AvrII	CCTAGG	1 cut(s)	73
BaeGI	GKGCMC	1 cut(s)	809
BanI	GGYRCC	1 cut(s)	69
BbsI	GAAGAC	2 cut(s)	177, 1191
BccI	CCATC	2 cut(s)	82, 830
BciT130I	CCWGG	1 cut(s)	903
BciVI	GTATCC	1 cut(s)	337
BclI	TGATCA	2 cut(s)	109, 685
BcoDI	GTCTC	3 cut(s)	868, 901, 937
BfaI	CTAG	5 cut(s)	74, 621, 633, 1058, 1173
BfoI	RGCGCY	1 cut(s)	780
BfuI	GTATCC	1 cut(s)	337
BglII	AGATCT	1 cut(s)	617
BlnI	CCTAGG	1 cut(s)	73
Bme1390I	CCNGG	1 cut(s)	903
Bme18I	GGWCC	3 cut(s)	369, 752, 968
BmgT120I	GGNCC	3 cut(s)	369, 752, 968
BmiI	GGNNCC	1 cut(s)	71
BmrFI	CCNGG	1 cut(s)	903
BmsI	GCATC	1 cut(s)	317
BmtI	GCTAGC	1 cut(s)	636
BpiI	GAAGAC	2 cut(s)	177, 1191
Bpu14I	TTCGAA	1 cut(s)	1050
BsaBI	GATNNNNATC	2 cut(s)	111, 606
BsaI	GGTCTC	1 cut(s)	868
BsaJI	CCNNGG	3 cut(s)	73, 361, 451
BsaWI	WCCGGW	1 cut(s)	978
Bsc4I	CCNNNNNNNGG	2 cut(s)	366, 828
Bse1I	ACTGG	3 cut(s)	241, 436, 597
Bse8I	GATNNNNATC	2 cut(s)	111, 606
BseAI	TCCGGA	1 cut(s)	978
BseBI	CCWGG	1 cut(s)	903
BseDI	CCNNGG	3 cut(s)	73, 361, 451
BseGI	GGATG	3 cut(s)	250, 308, 385
BseJI	GATNNNNATC	2 cut(s)	111, 606
BseLI	CCNNNNNNNGG	2 cut(s)	366, 828
BseMII	CTCAG	3 cut(s)	656, 693, 732
BseNI	ACTGG	3 cut(s)	241, 436, 597
BseSI	GKGCMC	1 cut(s)	809
BshNI	GGYRCC	1 cut(s)	69
BsiSI	CCGG	1 cut(s)	979
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	2 cut(s)	366, 828
BsmAI	GTCTC	3 cut(s)	868, 901, 937
BsmFI	GGGAC	1 cut(s)	413
BsmI	GAATGC	1 cut(s)	974
Bso31I	GGTCTC	1 cut(s)	868
Bsp119I	TTCGAA	1 cut(s)	1050
Bsp1286I	GDGCHC	1 cut(s)	809
Bsp13I	TCCGGA	1 cut(s)	978
Bsp143I	GATC	4 cut(s)	109, 455, 617, 685
Bsp19I	CCATGG	2 cut(s)	361, 451
BspACI	CCGC	3 cut(s)	240, 583, 1073
BspCNI	CTCAG	3 cut(s)	657, 692, 733
BspEI	TCCGGA	1 cut(s)	978
BspLI	GGNNCC	1 cut(s)	71
BspOI	GCTAGC	1 cut(s)	636
BspPI	GGATC	1 cut(s)	463
BspQI	GCTCTTC	1 cut(s)	85
BspT104I	TTCGAA	1 cut(s)	1050
BspT107I	GGYRCC	1 cut(s)	69
BspTNI	GGTCTC	1 cut(s)	868
BsrI	ACTGG	3 cut(s)	241, 436, 597
BssECI	CCNNGG	3 cut(s)	73, 361, 451
BssMI	GATC	4 cut(s)	109, 455, 617, 685
BssT1I	CCWWGG	3 cut(s)	73, 361, 451
Bst2UI	CCWGG	1 cut(s)	903
Bst4CI	ACNGT	3 cut(s)	215, 557, 831
Bst6I	CTCTTC	2 cut(s)	85, 424
BstBI	TTCGAA	1 cut(s)	1050
BstC8I	GCNNGC	5 cut(s)	264, 634, 957, 1090, 1104
BstDEI	CTNAG	4 cut(s)	96, 665, 679, 741
BstDSI	CCRYGG	2 cut(s)	361, 451
BstF5I	GGATG	3 cut(s)	250, 308, 385
BstH2I	RGCGCY	1 cut(s)	780
BstHHI	GCGC	1 cut(s)	779
BstKTI	GATC	4 cut(s)	112, 458, 620, 688
BstMAI	GTCTC	3 cut(s)	868, 901, 937
BstMBI	GATC	4 cut(s)	109, 455, 617, 685
BstMWI	GCNNNNNNNGC	1 cut(s)	1137
BstNI	CCWGG	1 cut(s)	903
BstNSI	RCATGY	2 cut(s)	138, 200
BstSCI	CCNGG	1 cut(s)	901
BstSLI	GKGCMC	1 cut(s)	809
BstV2I	GAAGAC	2 cut(s)	177, 1191
BstX2I	RGATCY	1 cut(s)	617
BstYI	RGATCY	1 cut(s)	617
BsuI	GTATCC	1 cut(s)	337
BtgI	CCRYGG	2 cut(s)	361, 451
BtgZI	GCGATG	1 cut(s)	101
BtsCI	GGATG	3 cut(s)	250, 308, 385
BtsIMutI	CAGTG	1 cut(s)	604
Cac8I	GCNNGC	5 cut(s)	264, 634, 957, 1090, 1104
CaiI	CAGNNNCTG	2 cut(s)	755, 848
CfoI	GCGC	1 cut(s)	779
Cfr13I	GGNCC	3 cut(s)	369, 752, 968
CseI	GACGC	1 cut(s)	1185
Csp6I	GTAC	5 cut(s)	34, 70, 132, 817, 1044
CviAII	CATG	8 cut(s)	16, 135, 150, 197, 362, 452, 1023, 1180
CviQI	GTAC	5 cut(s)	34, 70, 132, 817, 1044
DdeI	CTNAG	4 cut(s)	96, 665, 679, 741
DpnI	GATC	4 cut(s)	111, 457, 619, 687
DpnII	GATC	4 cut(s)	109, 455, 617, 685
Eam1104I	CTCTTC	2 cut(s)	85, 424
EarI	CTCTTC	2 cut(s)	85, 424
Eco130I	CCWWGG	3 cut(s)	73, 361, 451
Eco31I	GGTCTC	1 cut(s)	868
Eco47I	GGWCC	3 cut(s)	369, 752, 968
Eco57I	CTGAAG	3 cut(s)	278, 612, 753
EcoO109I	RGGNCCY	1 cut(s)	752
EcoRI	GAATTC	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	901
EcoT14I	CCWWGG	3 cut(s)	73, 361, 451
EcoT22I	ATGCAT	1 cut(s)	155
ErhI	CCWWGG	3 cut(s)	73, 361, 451
FaeI	CATG	8 cut(s)	19, 138, 153, 200, 365, 455, 1026, 1183
FalI	AAGNNNNNCTT	4 cut(s)	1091, 1123, 1183, 1215
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	8 cut(s)	15, 134, 149, 196, 361, 451, 1022, 1179
FauI	CCCGC	1 cut(s)	233
FbaI	TGATCA	2 cut(s)	109, 685
FblI	GTMKAC	1 cut(s)	503
FokI	GGATG	3 cut(s)	257, 295, 392
FspBI	CTAG	5 cut(s)	74, 621, 633, 1058, 1173
GlaI	GCGC	1 cut(s)	778
HaeII	RGCGCY	1 cut(s)	780
HapII	CCGG	1 cut(s)	979
HgaI	GACGC	1 cut(s)	1185
HhaI	GCGC	1 cut(s)	779
Hin1II	CATG	8 cut(s)	19, 138, 153, 200, 365, 455, 1026, 1183
Hin6I	GCGC	1 cut(s)	777
HinP1I	GCGC	1 cut(s)	777
HincII	GTYRAC	3 cut(s)	231, 468, 760
HindII	GTYRAC	3 cut(s)	231, 468, 760
HindIII	AAGCTT	3 cut(s)	576, 1090, 1100
HpaI	GTTAAC	1 cut(s)	468
HpaII	CCGG	1 cut(s)	979
HphI	GGTGA	2 cut(s)	668, 794
Hpy166II	GTNNAC	5 cut(s)	231, 468, 504, 747, 760
Hpy188I	TCNGA	4 cut(s)	106, 565, 682, 1081
Hpy188III	TCNNGA	7 cut(s)	121, 219, 284, 533, 740, 979, 1205
Hpy8I	GTNNAC	5 cut(s)	231, 468, 504, 747, 760
HpyAV	CCTTC	2 cut(s)	1057, 1059
HpyCH4III	ACNGT	3 cut(s)	215, 557, 831
HpyCH4IV	ACGT	2 cut(s)	27, 500
HpyCH4V	TGCA	9 cut(s)	153, 308, 315, 408, 497, 842, 955, 974, 1131
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1137
HpyF3I	CTNAG	4 cut(s)	96, 665, 679, 741
HpySE526I	ACGT	2 cut(s)	27, 500
Hsp92II	CATG	8 cut(s)	19, 138, 153, 200, 365, 455, 1026, 1183
HspAI	GCGC	1 cut(s)	777
Kpn2I	TCCGGA	1 cut(s)	978
KpnI	GGTACC	1 cut(s)	73
Ksp22I	TGATCA	2 cut(s)	109, 685
KspAI	GTTAAC	1 cut(s)	468
Kzo9I	GATC	4 cut(s)	109, 455, 617, 685
LguI	GCTCTTC	1 cut(s)	85
LmnI	GCTCC	1 cut(s)	845
LweI	GCATC	1 cut(s)	317
MaeI	CTAG	5 cut(s)	74, 621, 633, 1058, 1173
MaeII	ACGT	2 cut(s)	27, 500
MaeIII	GTNAC	2 cut(s)	47, 203
MalI	GATC	4 cut(s)	111, 457, 619, 687
MboI	GATC	4 cut(s)	109, 455, 617, 685
MboII	GAAGA	8 cut(s)	72, 175, 182, 411, 531, 602, 618, 1191
MflI	RGATCY	1 cut(s)	617
MhlI	GDGCHC	1 cut(s)	809
MluCI	AATT	5 cut(s)	126, 643, 963, 1007, 1215
MlyI	GAGTC	4 cut(s)	126, 395, 875, 939
MmeI	TCCRAC	1 cut(s)	347
MnlI	CCTC	4 cut(s)	343, 1024, 1140, 1196
Mph1103I	ATGCAT	1 cut(s)	155
MroI	TCCGGA	1 cut(s)	978
MseI	TTAA	4 cut(s)	338, 428, 467, 1110
MslI	CAYNNNNRTG	2 cut(s)	812, 933
MspI	CCGG	1 cut(s)	979
MspR9I	CCNGG	1 cut(s)	903
Mva1269I	GAATGC	1 cut(s)	974
MvaI	CCWGG	1 cut(s)	903
MwoI	GCNNNNNNNGC	1 cut(s)	1137
NcoI	CCATGG	2 cut(s)	361, 451
NdeII	GATC	4 cut(s)	109, 455, 617, 685
NheI	GCTAGC	1 cut(s)	632
NlaIII	CATG	8 cut(s)	19, 138, 153, 200, 365, 455, 1026, 1183
NlaIV	GGNNCC	1 cut(s)	71
NsiI	ATGCAT	1 cut(s)	155
NspI	RCATGY	2 cut(s)	138, 200
NspV	TTCGAA	1 cut(s)	1050
PciSI	GCTCTTC	1 cut(s)	85
PcsI	WCGNNNNNNNCGW	1 cut(s)	33
PctI	GAATGC	1 cut(s)	974
PfeI	GAWTC	6 cut(s)	443, 536, 560, 788, 1052, 1069
PleI	GAGTC	4 cut(s)	125, 395, 875, 939
PpsI	GAGTC	4 cut(s)	125, 395, 875, 939
PpuMI	RGGWCCY	1 cut(s)	752
Psp5II	RGGWCCY	1 cut(s)	752
Psp6I	CCWGG	1 cut(s)	901
PspGI	CCWGG	1 cut(s)	901
PspN4I	GGNNCC	1 cut(s)	71
PspPI	GGNCC	3 cut(s)	369, 752, 968
PspPPI	RGGWCCY	1 cut(s)	752
PstNI	CAGNNNCTG	2 cut(s)	755, 848
PsuI	RGATCY	1 cut(s)	617
RsaI	GTAC	5 cut(s)	35, 71, 133, 818, 1045
RsaNI	GTAC	5 cut(s)	34, 70, 132, 817, 1044
RseI	CAYNNNNRTG	2 cut(s)	812, 933
SapI	GCTCTTC	1 cut(s)	85
SaqAI	TTAA	4 cut(s)	338, 428, 467, 1110
Sau3AI	GATC	4 cut(s)	109, 455, 617, 685
Sau96I	GGNCC	3 cut(s)	369, 752, 968
SchI	GAGTC	4 cut(s)	126, 395, 875, 939
ScrFI	CCNGG	1 cut(s)	903
SduI	GDGCHC	1 cut(s)	809
SfaNI	GCATC	1 cut(s)	317
SfuI	TTCGAA	1 cut(s)	1050
SinI	GGWCC	3 cut(s)	369, 752, 968
SmiMI	CAYNNNNRTG	2 cut(s)	812, 933
Sse9I	AATT	5 cut(s)	126, 643, 963, 1007, 1215
SsiI	CCGC	3 cut(s)	240, 583, 1073
SspMI	CTAG	5 cut(s)	74, 621, 633, 1058, 1173
StyD4I	CCNGG	1 cut(s)	901
StyI	CCWWGG	3 cut(s)	73, 361, 451
TaaI	ACNGT	3 cut(s)	215, 557, 831
TaiI	ACGT	2 cut(s)	30, 503
TaqI	TCGA	8 cut(s)	115, 482, 525, 542, 570, 697, 1016, 1050
TasI	AATT	5 cut(s)	126, 643, 963, 1007, 1215
TfiI	GAWTC	6 cut(s)	443, 536, 560, 788, 1052, 1069
Tru1I	TTAA	4 cut(s)	338, 428, 467, 1110
Tru9I	TTAA	4 cut(s)	338, 428, 467, 1110
TscAI	CASTG	1 cut(s)	604
TspDTI	ATGAA	6 cut(s)	261, 951, 1011, 1098, 1156, 1227
TspRI	CASTG	1 cut(s)	604
VpaK11BI	GGWCC	3 cut(s)	369, 752, 968
XapI	RAATTY	3 cut(s)	126, 643, 1007
XceI	RCATGY	2 cut(s)	138, 200
XmaJI	CCTAGG	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	503
XspI	CTAG	5 cut(s)	74, 621, 633, 1058, 1173
Zsp2I	ATGCAT	1 cut(s)	155

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.