Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr3

Orthogroup ID

OG0004237

Physical Location & Seq

Genomic Coordinates Reverse (-)

15646396 .. 15649984

Gene Structure 3589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw3G015230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGGTTGATATGTCATTATCGACAAGTCATAGTAGTCATGACAATCAAGGGAGTGATGCAAAGACTGCTTTGCACCCGAGCGATCCGATGAGAGAAACAAAATCGTCTTTTGGTTTCTTTTCTGATTCTGACATATTGGTGTGGTTAAAAGGCCTTGCAATTGACTCTGGATATTGTAAAGCATCCCCAGGTTCAGCTCAACAGTTATGGAATCAGAGTCTTGAACTACGGAAACATTTGCTTCTTGCTAATGACGTTTCTCCTCGGAGTAAGCGAAAACTTGATCAGTTCCTAAGAGGTGGTAGATTCGCAGGCGCTTCAGAATTGGAAACGAAGAAATCCAATGATCATGTAAAGAGAATTTGTAGAGGGCATTCTGTCTCATGCTCAACCAATACAGATGGCAAGAATGAAATTTTCAGACCACAGATTCTATGTAGTTCACTCATGTCTGGAAATTCATTGACAAATGAGGATGAATATCGAGTGAAGCAATGTTGTCCCGATTTGACCATTCTGGATGATATGGAAAAATACGGTGCTCCCTACAAGGATAATTCTGCTTCTCCCCTCATTGATGCAGATGAATCAGTCCATGGTTCGAGTACATTAAGTCTGGAAAAATCCAACTTCTGTGATGCAACCACTTTGAAGGTTAATGATTCAGTTGACAGTTCAGATTCTTTCAGTTTAGATGAGTATGATTCAGAACTTGAAAGGGCATTGAGGTTATTGGTTTCCAGTGATGATGATCTTCGAAGATCTGTTACTTCCGCTCACCCTAAAATGAAGTCAGAGGAGAGAAATCATAAGGCTTGCGAAATATTGAGATGTTTATTTTCCGATGGCAAGTATTTTCGAAGGTCTGTTCCCATTGGCCGTGATTTTCAGGCTGATGTTCCAAAGTGGATAGGACCAGTCAATAGGAATAAGCTTTACAGTGAGGATGGTGATTCAGAAGTGTCAAGGTGGTTGGGCACCCTTATCTGGCCAATCAAAGGGAGGAAATGTAGAGGAGCTACCATAAAAGCAATTGGGAAAGGGAGACCTGAGTCTTGTTCTTGTGTCTCTCCAGGATCTGTTGATTGTGTCAAACAGCATATTCATGAAGCACGACTTTGCTTGCAGTCCGAGATTGGTCCTGCCTTCTGCAGTTGGAAGTTTGACGAAATGGGAGAATTTGCCTCAAAGTCATGGACTTTAAAAGAACAGAGAACCTTTGAATCTCTTGTGAGAACAAATCCACTATCAAACGAAGCAAGCTTTTGGAAGCTTGCGTTTAAGCGTTTCCCTGATAAGCGCAAGAAGAGCATCGTGAGTTATTACTATAATGTGTTCATCCCTAGACGTATGAGCCTTGAGACTAGATCTTCCCTTGATGAAATTGACAGCGATGATGACTCGATAGAGGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELM2

Protein Analysis

471

Amino Acids

52.98

Weight (kDa)

6.62

Isoelectric Point (pI)

54.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004237)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12001 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700
malus_domestica	MD04G1147000.v1.1 MD12G1160300.v1.1
prunus_persica	Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1
pyrus_communis	pycom04g13280 pycom12g15210
rosa_chinensis	RchiOBHm_Chr3g0463841 RchiOBHm_Chr3g0470651
rosa_laevigata	RLG00000024250 RLG00000024752
rosa_multiflora	Rmu_co8471153.1_g000001 Rmu_sc0004796.1_g000007
rosa_roxburghii	Rroxscaffold_6G00410630
rosa_rugosa	Rorug03G0068200 Rorug03G0068300 Rorug03G0111300 Rorug03G0111400
rosa_samantha	Rh3AG125500 Rh3AG161000 Rh3BG129600 Rh3BG185600 Rh3CG132100 Rh3CG175900 Rh3DG189200
rosa_wichuraiana	Rw3G010590 Rw3G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	977
AccBSI	CCGCTC	1 cut(s)	776
AciI	CCGC	1 cut(s)	774
AclWI	GGATC	2 cut(s)	77, 1084
AcoI	YGGCCR	2 cut(s)	877, 989
AcsI	RAATTY	4 cut(s)	360, 414, 457, 1178
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	1 cut(s)	607
AfiI	CCNNNNNNNGG	2 cut(s)	987, 998
AgsI	TTSAA	4 cut(s)	224, 652, 716, 1223
AjnI	CCWGG	2 cut(s)	187, 1072
AluBI	AGCT	5 cut(s)	197, 934, 1019, 1263, 1273
AluI	AGCT	5 cut(s)	197, 934, 1019, 1263, 1273
Alw21I	GWGCWC	1 cut(s)	544
Alw26I	GTCTC	4 cut(s)	385, 1039, 1072, 1355
AlwI	GGATC	2 cut(s)	77, 1084
AlwNI	CAGNNNCTG	1 cut(s)	1079
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	3 cut(s)	151, 877, 989
ApoI	RAATTY	4 cut(s)	360, 414, 457, 1178
AspLEI	GCGC	2 cut(s)	317, 1302
AspS9I	GGNCC	2 cut(s)	914, 1139
AsuHPI	GGTGA	2 cut(s)	770, 962
AsuII	TTCGAA	2 cut(s)	757, 859
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	2 cut(s)	914, 1139
BaeGI	GKGCMC	1 cut(s)	980
BalI	TGGCCA	1 cut(s)	991
BanI	GGYRCC	1 cut(s)	977
BarI	GAAGNNNNNNTAC	2 cut(s)	751, 783
Bbv12I	GWGCWC	1 cut(s)	544
BccI	CCATC	3 cut(s)	395, 839, 941
BceAI	ACGGC	1 cut(s)	864
BciT130I	CCWGG	2 cut(s)	189, 1074
BclI	TGATCA	2 cut(s)	283, 346
BcoDI	GTCTC	4 cut(s)	385, 1039, 1072, 1355
BfaI	CTAG	2 cut(s)	1344, 1365
BfmI	CTRYAG	1 cut(s)	1150
BfoI	RGCGCY	1 cut(s)	318
BglII	AGATCT	2 cut(s)	761, 1367
Bme1390I	CCNGG	2 cut(s)	189, 1074
Bme18I	GGWCC	2 cut(s)	914, 1139
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	914, 1139
BmiI	GGNNCC	1 cut(s)	979
BmrFI	CCNGG	2 cut(s)	189, 1074
BmsI	GCATC	5 cut(s)	46, 191, 568, 628, 1320
BoxI	GACNNNNGTC	1 cut(s)	1051
BpmI	CTGGAG	1 cut(s)	1056
Bpu14I	TTCGAA	2 cut(s)	757, 859
BpuEI	CTTGAG	1 cut(s)	1379
BsaBI	GATNNNNATC	2 cut(s)	480, 750
BsaI	GGTCTC	1 cut(s)	1039
BsaJI	CCNNGG	3 cut(s)	187, 263, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	994, 1024
Bsc4I	CCNNNNNNNGG	2 cut(s)	987, 998
Bse1I	ACTGG	2 cut(s)	741, 917
Bse3DI	GCAATG	1 cut(s)	500
Bse8I	GATNNNNATC	2 cut(s)	480, 750
BseBI	CCWGG	2 cut(s)	189, 1074
BseDI	CCNNGG	3 cut(s)	187, 263, 595
BseGI	GGATG	5 cut(s)	182, 481, 526, 952, 1338
BseJI	GATNNNNATC	2 cut(s)	480, 750
BseLI	CCNNNNNNNGG	2 cut(s)	987, 998
BseMI	GCAATG	1 cut(s)	500
BseMII	CTCAG	1 cut(s)	1041
BseNI	ACTGG	2 cut(s)	741, 917
BseRI	GAGGAG	3 cut(s)	252, 812, 1029
BseSI	GKGCMC	1 cut(s)	980
BshFI	GGCC	3 cut(s)	153, 879, 991
BshNI	GGYRCC	1 cut(s)	977
BsiHKAI	GWGCWC	1 cut(s)	544
BsiHKCI	CYCGRG	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	2 cut(s)	987, 998
BsmAI	GTCTC	4 cut(s)	385, 1039, 1072, 1355
BsmFI	GGGAC	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	3 cut(s)	153, 879, 991
Bso31I	GGTCTC	1 cut(s)	1039
BsoBI	CYCGRG	1 cut(s)	76
Bsp119I	TTCGAA	2 cut(s)	757, 859
Bsp1286I	GDGCHC	2 cut(s)	544, 980
Bsp143I	GATC	7 cut(s)	82, 283, 346, 751, 761, 1076, 1367
Bsp19I	CCATGG	1 cut(s)	595
BspACI	CCGC	1 cut(s)	774
BspANI	GGCC	3 cut(s)	153, 879, 991
BspCNI	CTCAG	1 cut(s)	1042
BspHI	TCATGA	2 cut(s)	37, 1105
BspLI	GGNNCC	1 cut(s)	979
BspMAI	CTGCAG	1 cut(s)	1154
BspPI	GGATC	2 cut(s)	77, 1084
BspQI	GCTCTTC	1 cut(s)	1301
BspT104I	TTCGAA	2 cut(s)	757, 859
BspT107I	GGYRCC	1 cut(s)	977
BspTNI	GGTCTC	1 cut(s)	1039
BsrBI	CCGCTC	1 cut(s)	776
BsrDI	GCAATG	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	741, 917
BssECI	CCNNGG	3 cut(s)	187, 263, 595
BssMI	GATC	7 cut(s)	82, 283, 346, 751, 761, 1076, 1367
BssT1I	CCWWGG	1 cut(s)	595
Bst2UI	CCWGG	2 cut(s)	189, 1074
Bst4CI	ACNGT	4 cut(s)	204, 539, 674, 941
Bst6I	CTCTTC	1 cut(s)	1301
BstAPI	GCANNNNNTGC	1 cut(s)	65
BstBI	TTCGAA	2 cut(s)	757, 859
BstC8I	GCNNGC	5 cut(s)	313, 817, 1124, 1261, 1275
BstDEI	CTNAG	2 cut(s)	293, 1050
BstDSI	CCRYGG	1 cut(s)	595
BstF5I	GGATG	5 cut(s)	182, 481, 526, 952, 1338
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	2 cut(s)	317, 1302
BstKTI	GATC	7 cut(s)	85, 286, 349, 754, 764, 1079, 1370
BstMAI	GTCTC	4 cut(s)	385, 1039, 1072, 1355
BstMBI	GATC	7 cut(s)	82, 283, 346, 751, 761, 1076, 1367
BstMWI	GCNNNNNNNGC	2 cut(s)	65, 1308
BstNI	CCWGG	2 cut(s)	189, 1074
BstPAI	GACNNNNGTC	1 cut(s)	1051
BstSCI	CCNGG	2 cut(s)	187, 1072
BstSFI	CTRYAG	1 cut(s)	1150
BstSLI	GKGCMC	1 cut(s)	980
BstX2I	RGATCY	3 cut(s)	761, 1076, 1367
BstYI	RGATCY	3 cut(s)	761, 1076, 1367
BsuRI	GGCC	3 cut(s)	153, 879, 991
BtgI	CCRYGG	1 cut(s)	595
BtgZI	GCGATG	1 cut(s)	1407
BtsCI	GGATG	5 cut(s)	182, 481, 526, 952, 1338
BtsIMutI	CAGTG	2 cut(s)	748, 946
Cac8I	GCNNGC	5 cut(s)	313, 817, 1124, 1261, 1275
CaiI	CAGNNNCTG	1 cut(s)	1079
CciI	TCATGA	2 cut(s)	37, 1105
CfoI	GCGC	2 cut(s)	317, 1302
Cfr13I	GGNCC	2 cut(s)	914, 1139
Csp6I	GTAC	1 cut(s)	606
CviAII	CATG	7 cut(s)	38, 350, 384, 448, 596, 1106, 1194
CviQI	GTAC	1 cut(s)	606
DdeI	CTNAG	2 cut(s)	293, 1050
DpnI	GATC	7 cut(s)	84, 285, 348, 753, 763, 1078, 1369
DpnII	GATC	7 cut(s)	82, 283, 346, 751, 761, 1076, 1367
DraI	TTTAAA	1 cut(s)	1203
EaeI	YGGCCR	2 cut(s)	877, 989
Eam1104I	CTCTTC	1 cut(s)	1301
EarI	CTCTTC	1 cut(s)	1301
Eco130I	CCWWGG	1 cut(s)	595
Eco147I	AGGCCT	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	1039
Eco47I	GGWCC	2 cut(s)	914, 1139
Eco57I	CTGAAG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	187, 1072
EcoT14I	CCWWGG	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	7 cut(s)	41, 353, 387, 451, 599, 1109, 1197
FalI	AAGNNNNNCTT	2 cut(s)	1101, 1133
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	7 cut(s)	37, 349, 383, 447, 595, 1105, 1193
FbaI	TGATCA	2 cut(s)	283, 346
FokI	GGATG	5 cut(s)	169, 488, 533, 959, 1325
FspBI	CTAG	2 cut(s)	1344, 1365
GlaI	GCGC	2 cut(s)	316, 1301
GsuI	CTGGAG	1 cut(s)	1056
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	3 cut(s)	153, 879, 991
HhaI	GCGC	2 cut(s)	317, 1302
Hin1II	CATG	7 cut(s)	41, 353, 387, 451, 599, 1109, 1197
Hin6I	GCGC	2 cut(s)	315, 1300
HinP1I	GCGC	2 cut(s)	315, 1300
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HindIII	AAGCTT	3 cut(s)	932, 1261, 1271
HphI	GGTGA	2 cut(s)	770, 962
Hpy166II	GTNNAC	2 cut(s)	443, 670
Hpy188III	TCNNGA	9 cut(s)	38, 168, 221, 453, 503, 518, 617, 1106, 1315
Hpy8I	GTNNAC	2 cut(s)	443, 670
HpyAV	CCTTC	3 cut(s)	646, 855, 1156
HpyCH4III	ACNGT	4 cut(s)	204, 539, 674, 941
HpyCH4IV	ACGT	2 cut(s)	255, 1348
HpyCH4V	TGCA	7 cut(s)	59, 73, 158, 581, 641, 1126, 1152
HpyF10VI	GCNNNNNNNGC	2 cut(s)	65, 1308
HpyF3I	CTNAG	2 cut(s)	293, 1050
HpySE526I	ACGT	2 cut(s)	255, 1348
Hsp92II	CATG	7 cut(s)	41, 353, 387, 451, 599, 1109, 1197
HspAI	GCGC	2 cut(s)	315, 1300
Ksp22I	TGATCA	2 cut(s)	283, 346
Kzo9I	GATC	7 cut(s)	82, 283, 346, 751, 761, 1076, 1367
LguI	GCTCTTC	1 cut(s)	1301
LmnI	GCTCC	2 cut(s)	547, 1016
LweI	GCATC	5 cut(s)	46, 191, 568, 628, 1320
MaeI	CTAG	2 cut(s)	1344, 1365
MaeII	ACGT	2 cut(s)	255, 1348
MaeIII	GTNAC	1 cut(s)	766
MalI	GATC	7 cut(s)	84, 285, 348, 753, 763, 1078, 1369
MbiI	CCGCTC	1 cut(s)	776
MboI	GATC	7 cut(s)	82, 283, 346, 751, 761, 1076, 1367
MboII	GAAGA	5 cut(s)	346, 746, 771, 1318, 1362
MfeI	CAATTG	2 cut(s)	159, 1032
MflI	RGATCY	3 cut(s)	761, 1076, 1367
MhlI	GDGCHC	2 cut(s)	544, 980
MlsI	TGGCCA	1 cut(s)	991
MluCI	AATT	9 cut(s)	159, 323, 360, 414, 457, 556, 1032, 1178, 1383
MluNI	TGGCCA	1 cut(s)	991
MlyI	GAGTC	4 cut(s)	158, 226, 1061, 1394
MmeI	TCCRAC	2 cut(s)	651, 1136
Mox20I	TGGCCA	1 cut(s)	991
MscI	TGGCCA	1 cut(s)	991
MseI	TTAA	5 cut(s)	146, 611, 657, 1202, 1281
MslI	CAYNNNNRTG	2 cut(s)	137, 1104
Msp20I	TGGCCA	1 cut(s)	991
MspR9I	CCNGG	2 cut(s)	189, 1074
MunI	CAATTG	2 cut(s)	159, 1032
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	2 cut(s)	189, 1074
MwoI	GCNNNNNNNGC	2 cut(s)	65, 1308
NcoI	CCATGG	1 cut(s)	595
NdeII	GATC	7 cut(s)	82, 283, 346, 751, 761, 1076, 1367
NlaIII	CATG	7 cut(s)	41, 353, 387, 451, 599, 1109, 1197
NlaIV	GGNNCC	1 cut(s)	979
NspV	TTCGAA	2 cut(s)	757, 859
PagI	TCATGA	2 cut(s)	37, 1105
PceI	AGGCCT	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	1301
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PctI	GAATGC	1 cut(s)	373
PfoI	TCCNGGA	1 cut(s)	1072
PleI	GAGTC	4 cut(s)	158, 225, 1060, 1394
PpsI	GAGTC	4 cut(s)	158, 225, 1060, 1394
PshAI	GACNNNNGTC	1 cut(s)	1051
Psp6I	CCWGG	2 cut(s)	187, 1072
PspGI	CCWGG	2 cut(s)	187, 1072
PspN4I	GGNNCC	1 cut(s)	979
PspPI	GGNCC	2 cut(s)	914, 1139
PstI	CTGCAG	1 cut(s)	1154
PstNI	CAGNNNCTG	1 cut(s)	1079
PsuI	RGATCY	3 cut(s)	761, 1076, 1367
RsaI	GTAC	1 cut(s)	607
RsaNI	GTAC	1 cut(s)	606
RseI	CAYNNNNRTG	2 cut(s)	137, 1104
SapI	GCTCTTC	1 cut(s)	1301
SaqAI	TTAA	5 cut(s)	146, 611, 657, 1202, 1281
Sau3AI	GATC	7 cut(s)	82, 283, 346, 751, 761, 1076, 1367
Sau96I	GGNCC	2 cut(s)	914, 1139
SchI	GAGTC	4 cut(s)	158, 226, 1061, 1394
ScrFI	CCNGG	2 cut(s)	189, 1074
SduI	GDGCHC	2 cut(s)	544, 980
SfaNI	GCATC	5 cut(s)	46, 191, 568, 628, 1320
SfcI	CTRYAG	1 cut(s)	1150
SfuI	TTCGAA	2 cut(s)	757, 859
SinI	GGWCC	2 cut(s)	914, 1139
SmiMI	CAYNNNNRTG	2 cut(s)	137, 1104
SmlI	CTYRAG	1 cut(s)	1358
SmoI	CTYRAG	1 cut(s)	1358
Sse9I	AATT	9 cut(s)	159, 323, 360, 414, 457, 556, 1032, 1178, 1383
SseBI	AGGCCT	1 cut(s)	153
SsiI	CCGC	1 cut(s)	774
SspI	AATATT	1 cut(s)	825
SspMI	CTAG	2 cut(s)	1344, 1365
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	187, 1072
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	4 cut(s)	204, 539, 674, 941
TaiI	ACGT	2 cut(s)	258, 1351
TaqI	TCGA	6 cut(s)	20, 484, 602, 757, 859, 1403
TasI	AATT	9 cut(s)	159, 323, 360, 414, 457, 556, 1032, 1178, 1383
TatI	WGTACW	1 cut(s)	605
Tru1I	TTAA	5 cut(s)	146, 611, 657, 1202, 1281
Tru9I	TTAA	5 cut(s)	146, 611, 657, 1202, 1281
TscAI	CASTG	2 cut(s)	748, 946
TspDTI	ATGAA	9 cut(s)	426, 450, 492, 600, 803, 1094, 1122, 1327, 1395
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	2 cut(s)	748, 946
VpaK11BI	GGWCC	2 cut(s)	914, 1139
XapI	RAATTY	4 cut(s)	360, 414, 457, 1178
XspI	CTAG	2 cut(s)	1344, 1365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.