Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004237

Physical Location & Seq

Genomic Coordinates Forward (+)

5265906 .. 5267645

Gene Structure 1740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0068300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGTCCAAATTGCCAGAAGAGATGCTGGTGCAAATCCTGTCGAGGCTGCCACCCAGATCTCTTATGCGATTCAAATGCATCCATATGTCATGGTATACTTTGATCAATAATCCCATCTTTGTGGACAAACACCTATTCGTTTCGAAGCACAACAAACTCTCTTCCTTCACCACCATCCTTTTCAAGCGCTATGTCCTTAGAAACGAGAACACTGACCAAAAGAAAACGGTATTGTCATTATTCAATCTTTTCCATAATAATGATGATGGTAAGGGCCACCATCTTGATTCTGTTATGGAGGAACTCCATGTCCCACCTTCAATGCGTCTAAAGAGGATGAACGATCATTGTGGACTCGAGTTTTTGGAACTTTCAGGTCATTGTGATGGGATCATTTGTTTAACTGATTTTAGAGAGAACATTGTTTTATGCAATCCAGCCATCAAGGAATTCAAACTTCTTCCGTTGTCGAGTTTTCATCTCTCTTACCCGGATGGTGTCTACACATCTGCTGTGGGATTTGGATATGATCTCAAATCAAAATGTTATAAAGCTGTTAGAGTTTGTGAATATGGGCAAGATTACAATGATAAAGGTCTTGTTACTCTACCTCCAAAAGCAGAAGTATACAGCCTCGTTACAAATTCTTGGAAAGAAATCAAGGCTGATAATTTGGTGAAGAACACTACAGTGATTTGGTTTCATAGTTGGCCTGAAGCAGCCGTCCCAACCTACTGCAAGGGAATAATTTATTGGTCTGGAAAAAGGAGGGTATATCGTGACTATCCAGGTGTTGACGACGACGAACATGAGTTGGATCTCAGTAATCGGATCATTTCATTTCATATAGGTGATGAGACATTTCATGATATACCATGTCCAGATGTTGGTTTGCTAACCCGTAGGGCTTTTGGATTGTGGAATGAATCCTTAGCTCTTTCTAGTTTGGGTGAGAGTGAGAAGGACTCCATAGATATATGGGTGCTGGACGACATCGAGGAAACTTGGACAAAATGCGTTACTCTTCGCCCAGTTGTGAATATTTTATATCCGTTGACATTAGCAAGGAAGAGCGAGCAATTTCTTCTTGTTGCCATTGATGAATGCGTAGTGATCTTCTACAACTGTTGTACCGGAAAGTTTAAGTATCTCCCTATTAGTGGCGTGTTCCTAAACCACTATCAAGCTGTTTCTTATGTGAGTAGTACTGTTTCAATAGAGAGAGGCAATAAGGTTGAAGAGGAGATAAGTGAAGGAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELM2

Protein Analysis

420

Amino Acids

48.27

Weight (kDa)

6.02

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	2 - 40	8.8e-08	F-box domain
F-box-like	PF12937	2 - 46	1.2e-07	F-box-like
FBA_3	PF08268	120 - 390	5.7e-13	F-box associated beta propeller domain
FBA_1	PF07734	126 - 376	1.3e-20	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004237)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12001 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700
malus_domestica	MD04G1147000.v1.1 MD12G1160300.v1.1
prunus_persica	Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1
pyrus_communis	pycom04g13280 pycom12g15210
rosa_chinensis	RchiOBHm_Chr3g0463841 RchiOBHm_Chr3g0470651
rosa_laevigata	RLG00000024250 RLG00000024752
rosa_multiflora	Rmu_co8471153.1_g000001 Rmu_sc0004796.1_g000007
rosa_roxburghii	Rroxscaffold_6G00410630
rosa_rugosa	Rorug03G0068200 Rorug03G0068300 Rorug03G0111300 Rorug03G0111400
rosa_samantha	Rh3AG125500 Rh3AG161000 Rh3BG129600 Rh3BG185600 Rh3CG132100 Rh3CG175900 Rh3DG189200
rosa_wichuraiana	Rw3G010590 Rw3G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	549
AccB7I	CCANNNNNTGG	1 cut(s)	887
AccI	GTMKAC	3 cut(s)	95, 501, 627
AclWI	GGATC	3 cut(s)	398, 825, 839
AcsI	RAATTY	2 cut(s)	449, 643
AcuI	CTGAAG	1 cut(s)	735
AfaI	GTAC	2 cut(s)	1132, 1207
AfeI	AGCGCT	1 cut(s)	188
AfiI	CCNNNNNNNGG	2 cut(s)	887, 1160
AgsI	TTSAA	7 cut(s)	73, 184, 244, 321, 454, 1215, 1238
AjnI	CCWGG	1 cut(s)	787
AjuI	GAANNNNNNNTTGG	2 cut(s)	736, 768
AleI	CACNNNNGTG	1 cut(s)	689
AloI	GAACNNNNNNTCC	2 cut(s)	294, 326
AluBI	AGCT	3 cut(s)	554, 935, 1187
AluI	AGCT	3 cut(s)	554, 935, 1187
Alw26I	GTCTC	1 cut(s)	851
AlwI	GGATC	3 cut(s)	398, 825, 839
Ama87I	CYCGRG	1 cut(s)	356
Aor51HI	AGCGCT	1 cut(s)	188
AoxI	GGCC	2 cut(s)	274, 710
ApeKI	GCWGC	2 cut(s)	46, 719
ApoI	RAATTY	2 cut(s)	449, 643
AspLEI	GCGC	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	274
AsuC2I	CCSGG	1 cut(s)	491
AsuHPI	GGTGA	4 cut(s)	160, 688, 863, 962
AsuII	TTCGAA	1 cut(s)	143
AvaI	CYCGRG	1 cut(s)	356
BaeI	ACNNNNGTAYC	2 cut(s)	1114, 1147
BbvI	GCAGC	2 cut(s)	33, 731
BccI	CCATC	7 cut(s)	122, 182, 260, 288, 380, 449, 488
BceAI	ACGGC	1 cut(s)	707
BcgI	CGANNNNNNTGC	2 cut(s)	57, 91
BciT130I	CCWGG	1 cut(s)	789
BclI	TGATCA	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	491
BcoDI	GTCTC	1 cut(s)	851
BfaI	CTAG	1 cut(s)	942
BfmI	CTRYAG	1 cut(s)	687
BfoI	RGCGCY	1 cut(s)	190
BglII	AGATCT	1 cut(s)	56
BisI	GCNGC	2 cut(s)	47, 720
BlsI	GCNGC	2 cut(s)	48, 721
BmcAI	AGTACT	1 cut(s)	1207
Bme1390I	CCNGG	2 cut(s)	491, 789
BmeT110I	CYCGRG	1 cut(s)	356
BmgT120I	GGNCC	1 cut(s)	274
BmrFI	CCNGG	2 cut(s)	491, 789
BmrI	ACTGGG	1 cut(s)	1025
BmsI	GCATC	2 cut(s)	12, 87
BmuI	ACTGGG	1 cut(s)	1025
BplI	GAGNNNNNCTC	2 cut(s)	950, 982
Bpu10I	CCTNAGC	1 cut(s)	931
Bpu14I	TTCGAA	1 cut(s)	143
BpuMI	CCSGG	1 cut(s)	491
BsaWI	WCCGGW	1 cut(s)	1133
BsaXI	ACNNNNNCTCC	2 cut(s)	595, 625
Bsc4I	CCNNNNNNNGG	2 cut(s)	887, 1160
Bse1I	ACTGG	1 cut(s)	1031
BseBI	CCWGG	1 cut(s)	789
BseGI	GGATG	4 cut(s)	78, 174, 342, 499
BseLI	CCNNNNNNNGG	2 cut(s)	887, 1160
BseMII	CTCAG	1 cut(s)	835
BseNI	ACTGG	1 cut(s)	1031
BseRI	GAGGAG	1 cut(s)	1256
BseXI	GCAGC	2 cut(s)	33, 731
BshFI	GGCC	2 cut(s)	276, 712
BsiHKCI	CYCGRG	1 cut(s)	356
BsiSI	CCGG	2 cut(s)	491, 1134
BslFI	GGGAC	2 cut(s)	296, 710
BslI	CCNNNNNNNGG	2 cut(s)	887, 1160
BsmAI	GTCTC	1 cut(s)	851
BsmFI	GGGAC	2 cut(s)	296, 710
BsmI	GAATGC	1 cut(s)	1109
BsnI	GGCC	2 cut(s)	276, 712
BsoBI	CYCGRG	1 cut(s)	356
Bsp119I	TTCGAA	1 cut(s)	143
Bsp143I	GATC	8 cut(s)	56, 102, 343, 390, 529, 817, 831, 1113
BspANI	GGCC	2 cut(s)	276, 712
BspCNI	CTCAG	1 cut(s)	834
BspHI	TCATGA	1 cut(s)	865
BspPI	GGATC	3 cut(s)	398, 825, 839
BspQI	GCTCTTC	1 cut(s)	1064
BspT104I	TTCGAA	1 cut(s)	143
BsrI	ACTGG	1 cut(s)	1031
BssMI	GATC	8 cut(s)	56, 102, 343, 390, 529, 817, 831, 1113
BssNAI	GTATAC	2 cut(s)	96, 628
Bst1107I	GTATAC	2 cut(s)	96, 628
Bst2UI	CCWGG	1 cut(s)	789
Bst4CI	ACNGT	4 cut(s)	229, 691, 1127, 1210
Bst6I	CTCTTC	5 cut(s)	12, 166, 1029, 1064, 1233
BstBI	TTCGAA	1 cut(s)	143
BstC8I	GCNNGC	1 cut(s)	1076
BstDEI	CTNAG	3 cut(s)	197, 821, 931
BstF5I	GGATG	4 cut(s)	78, 174, 342, 499
BstH2I	RGCGCY	1 cut(s)	190
BstHHI	GCGC	1 cut(s)	189
BstKTI	GATC	8 cut(s)	59, 105, 346, 393, 532, 820, 834, 1116
BstMAI	GTCTC	1 cut(s)	851
BstMBI	GATC	8 cut(s)	56, 102, 343, 390, 529, 817, 831, 1113
BstNI	CCWGG	1 cut(s)	789
BstSCI	CCNGG	2 cut(s)	489, 787
BstSFI	CTRYAG	1 cut(s)	687
BstV1I	GCAGC	2 cut(s)	33, 731
BstX2I	RGATCY	2 cut(s)	56, 817
BstXI	CCANNNNNNTGG	1 cut(s)	121
BstYI	RGATCY	2 cut(s)	56, 817
BstZ17I	GTATAC	2 cut(s)	96, 628
BsuRI	GGCC	2 cut(s)	276, 712
BtsCI	GGATG	4 cut(s)	78, 174, 342, 499
BtsIMutI	CAGTG	2 cut(s)	210, 696
Cac8I	GCNNGC	1 cut(s)	1076
CciI	TCATGA	1 cut(s)	865
CfoI	GCGC	1 cut(s)	189
Cfr13I	GGNCC	1 cut(s)	274
CseI	GACGC	1 cut(s)	314
Csp6I	GTAC	2 cut(s)	1131, 1206
CviAII	CATG	5 cut(s)	90, 308, 809, 866, 876
CviQI	GTAC	2 cut(s)	1131, 1206
DdeI	CTNAG	3 cut(s)	197, 821, 931
DpnI	GATC	8 cut(s)	58, 104, 345, 392, 531, 819, 833, 1115
DpnII	GATC	8 cut(s)	56, 102, 343, 390, 529, 817, 831, 1113
Eam1104I	CTCTTC	5 cut(s)	12, 166, 1029, 1064, 1233
EarI	CTCTTC	5 cut(s)	12, 166, 1029, 1064, 1233
Eco47III	AGCGCT	1 cut(s)	188
Eco57I	CTGAAG	1 cut(s)	735
Eco88I	CYCGRG	1 cut(s)	356
EcoRI	GAATTC	1 cut(s)	449
EcoRII	CCWGG	1 cut(s)	787
EcoT22I	ATGCAT	1 cut(s)	80
FaeI	CATG	5 cut(s)	93, 311, 812, 869, 879
FaqI	GGGAC	2 cut(s)	296, 710
FatI	CATG	5 cut(s)	89, 307, 808, 865, 875
FauNDI	CATATG	1 cut(s)	84
FbaI	TGATCA	1 cut(s)	102
FblI	GTMKAC	3 cut(s)	95, 501, 627
Fnu4HI	GCNGC	2 cut(s)	47, 720
FokI	GGATG	4 cut(s)	65, 161, 349, 506
Fsp4HI	GCNGC	2 cut(s)	47, 720
FspBI	CTAG	1 cut(s)	942
GlaI	GCGC	1 cut(s)	188
GluI	GCNGC	2 cut(s)	47, 720
HaeII	RGCGCY	1 cut(s)	190
HaeIII	GGCC	2 cut(s)	276, 712
HapII	CCGG	2 cut(s)	491, 1134
HgaI	GACGC	1 cut(s)	314
HhaI	GCGC	1 cut(s)	189
Hin1II	CATG	5 cut(s)	93, 311, 812, 869, 879
Hin6I	GCGC	1 cut(s)	187
HinP1I	GCGC	1 cut(s)	187
HincII	GTYRAC	2 cut(s)	796, 1056
HindII	GTYRAC	2 cut(s)	796, 1056
HinfI	GANTC	5 cut(s)	69, 287, 354, 926, 965
HpaII	CCGG	2 cut(s)	491, 1134
HphI	GGTGA	4 cut(s)	160, 688, 863, 962
Hpy166II	GTNNAC	7 cut(s)	96, 124, 353, 502, 628, 796, 1056
Hpy188I	TCNGA	1 cut(s)	831
Hpy188III	TCNNGA	5 cut(s)	284, 759, 779, 866, 881
Hpy8I	GTNNAC	7 cut(s)	96, 124, 353, 502, 628, 796, 1056
Hpy99I	CGWCG	2 cut(s)	803, 806
HpyAV	CCTTC	4 cut(s)	175, 327, 955, 1247
HpyCH4III	ACNGT	4 cut(s)	229, 691, 1127, 1210
HpyCH4V	TGCA	4 cut(s)	31, 78, 432, 738
HpyF3I	CTNAG	3 cut(s)	197, 821, 931
Hsp92II	CATG	5 cut(s)	93, 311, 812, 869, 879
HspAI	GCGC	1 cut(s)	187
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	8 cut(s)	56, 102, 343, 390, 529, 817, 831, 1113
LguI	GCTCTTC	1 cut(s)	1064
Lsp1109I	GCAGC	2 cut(s)	33, 731
LweI	GCATC	2 cut(s)	12, 87
MaeI	CTAG	1 cut(s)	942
MaeIII	GTNAC	4 cut(s)	601, 637, 779, 1018
MalI	GATC	8 cut(s)	58, 104, 345, 392, 531, 819, 833, 1115
MboI	GATC	8 cut(s)	56, 102, 343, 390, 529, 817, 831, 1113
MboII	GAAGA	9 cut(s)	29, 153, 452, 691, 1016, 1076, 1081, 1108, 1250
MflI	RGATCY	2 cut(s)	56, 817
MluCI	AATT	6 cut(s)	8, 449, 643, 670, 747, 1079
MlyI	GAGTC	2 cut(s)	348, 959
MmeI	TCCRAC	1 cut(s)	795
MnlI	CCTC	9 cut(s)	36, 292, 327, 621, 644, 762, 991, 1217, 1234
Mph1103I	ATGCAT	1 cut(s)	80
MseI	TTAA	2 cut(s)	401, 1143
MslI	CAYNNNNRTG	6 cut(s)	83, 119, 258, 384, 689, 849
MspI	CCGG	2 cut(s)	491, 1134
MspR9I	CCNGG	2 cut(s)	491, 789
Mva1269I	GAATGC	1 cut(s)	1109
MvaI	CCWGG	1 cut(s)	789
NciI	CCSGG	1 cut(s)	491
NdeI	CATATG	1 cut(s)	84
NdeII	GATC	8 cut(s)	56, 102, 343, 390, 529, 817, 831, 1113
NlaIII	CATG	5 cut(s)	93, 311, 812, 869, 879
NmuCI	GTSAC	1 cut(s)	779
NsiI	ATGCAT	1 cut(s)	80
NspV	TTCGAA	1 cut(s)	143
OliI	CACNNNNGTG	1 cut(s)	689
PaeR7I	CTCGAG	1 cut(s)	356
PagI	TCATGA	1 cut(s)	865
PciSI	GCTCTTC	1 cut(s)	1064
PctI	GAATGC	1 cut(s)	1109
PfeI	GAWTC	3 cut(s)	69, 287, 926
PflMI	CCANNNNNTGG	1 cut(s)	887
PkrI	GCNGC	2 cut(s)	48, 721
PleI	GAGTC	2 cut(s)	348, 959
PpsI	GAGTC	2 cut(s)	348, 959
PsiI	TTATAA	1 cut(s)	549
Psp6I	CCWGG	1 cut(s)	787
PspGI	CCWGG	1 cut(s)	787
PspPI	GGNCC	1 cut(s)	274
PspXI	VCTCGAGB	1 cut(s)	356
PsuI	RGATCY	2 cut(s)	56, 817
RsaI	GTAC	2 cut(s)	1132, 1207
RsaNI	GTAC	2 cut(s)	1131, 1206
RseI	CAYNNNNRTG	6 cut(s)	83, 119, 258, 384, 689, 849
SapI	GCTCTTC	1 cut(s)	1064
SaqAI	TTAA	2 cut(s)	401, 1143
SatI	GCNGC	2 cut(s)	47, 720
Sau3AI	GATC	8 cut(s)	56, 102, 343, 390, 529, 817, 831, 1113
Sau96I	GGNCC	1 cut(s)	274
ScaI	AGTACT	1 cut(s)	1207
SchI	GAGTC	2 cut(s)	348, 959
ScrFI	CCNGG	2 cut(s)	491, 789
SfaNI	GCATC	2 cut(s)	12, 87
SfcI	CTRYAG	1 cut(s)	687
Sfr274I	CTCGAG	1 cut(s)	356
SfuI	TTCGAA	1 cut(s)	143
SlaI	CTCGAG	1 cut(s)	356
SmiMI	CAYNNNNRTG	6 cut(s)	83, 119, 258, 384, 689, 849
SmlI	CTYRAG	1 cut(s)	356
SmoI	CTYRAG	1 cut(s)	356
Sse9I	AATT	6 cut(s)	8, 449, 643, 670, 747, 1079
SspI	AATATT	1 cut(s)	1042
SspMI	CTAG	1 cut(s)	942
StyD4I	CCNGG	2 cut(s)	489, 787
TaaI	ACNGT	4 cut(s)	229, 691, 1127, 1210
TaqI	TCGA	5 cut(s)	41, 143, 357, 470, 996
TasI	AATT	6 cut(s)	8, 449, 643, 670, 747, 1079
TatI	WGTACW	1 cut(s)	1205
TfiI	GAWTC	3 cut(s)	69, 287, 926
Tru1I	TTAA	2 cut(s)	401, 1143
Tru9I	TTAA	2 cut(s)	401, 1143
TscAI	CASTG	2 cut(s)	217, 696
TseFI	GTSAC	1 cut(s)	779
TseI	GCWGC	2 cut(s)	46, 719
Tsp45I	GTSAC	1 cut(s)	779
TspDTI	ATGAA	8 cut(s)	353, 467, 692, 828, 833, 854, 939, 1116
TspGWI	ACGGA	2 cut(s)	453, 1041
TspRI	CASTG	2 cut(s)	217, 696
Van91I	CCANNNNNTGG	1 cut(s)	887
XapI	RAATTY	2 cut(s)	449, 643
XhoI	CTCGAG	1 cut(s)	356
XmiI	GTMKAC	3 cut(s)	95, 501, 627
XspI	CTAG	1 cut(s)	942
ZrmI	AGTACT	1 cut(s)	1207
Zsp2I	ATGCAT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.