Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0004237

Physical Location & Seq

Genomic Coordinates Reverse (-)

10596939 .. 10600520

Gene Structure 3582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g16700.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1419 bp

ATGTCATTATCGACAAGCCAGAGTAGTCGTGACAATCAAGGGAGTGAAGCAAAAACTGCTTTGTCCATGAGGGATCAGATGAGAGAAACACAATCGCCTTTCAGTTTCTATACTGACTCAGACATATTGGTGTGGTTAAAAGGCCTTGCAATTGACCCTGGATATTGTAAACCCTCCCCAGGTTCAGCTCCACAATTATGGAGTCAGAGTCTTGAACTACGGGGACTTTTGCTTCTTGGTAATGACTTCTCTCCTCGGAGTAAGCGAAAACTTGATCAGTTTCTAAGAGGTGGTAGATTCTCAGGCGCTTCGGAATTGGAGATGAAGAACTCTGATGATCATGTGAAGAGAATTTGTAGAGGGCATTCTGTCTCAGGCTCAACCAATACAGATGTCAAGAATGAAATTTTCAGACCACAATGTAGTTCACTCATGTCTGGAAATTCATTGACAAATGAGGATGAATATCGAGGGAAACAGTGTTGTCCCGATTTGACCGTTCCGGATGATATGGAAAAATACGGTGCTCTCTGCAAGGATTTTTCTGCTTCTCCCCTCAGTGATACAGATAAATCAGTCCATGGTATGAGCTCATCAAGTGTGGAAAAGTCCAACTTCTGTGATGCAACCGCTTTGAAGGCTAATGATTCAGTTGACAGTTCATATTTTCCCAGATTAGATTACTATGATTCAGAACTTGAAAAGGCATTGAGGTTATTGGTAGATGATAAACTTCAATTATCTGTTACTTCAGCTCACCCTACAGCTTCATTGAGGTCAGAGGAGAGAAATCCTAAGGCTAGTCAAATATTGAGAATTGTTTTTGCTGAGAATCCTTTTGCTGATGGCGAGTATTTTCGAAGGTCCGTTCCCGTTGGCCGTGATTTTCAGGCTGAAGTTCCAGAGTGGACAGGACCGGTCAATAGGATTAAGATTTATAGTGAGGATGATGATTCAAAAGTGTCAAGGTGGTTAGGCACACGTATGTGGCCCATCAAAGGGAGGCAATGTGGAGGAGCCACCATTAAACCAATTGGGAAAGGGAGACCTGAGTCTTGCTCTTGTGTCTCTCCAGGATGTGTTGATTGTGTCAAAGACCATATTCATGAGACACGACTTTGCTTGAAGTCCGAGATTGGTCCTGCCTTCTGCAGTTGGAAGTTTGACGAAATGGGAGAATTTGCCTCTGAGTCATGGAATTCAAAAGAACAGAGAACCTTTGAATCTCTTGTGAGAACAAATCCACTATCAAAATATGATGGCTTTTGGAAGCTTGCCTTTAAGCGCTTCCCTGATAAGCGCAAGAAGAGCATTGTGAGCTATTACTATAATGTGTTCATCCCTAGACGTATGAGCCTTGCGACTAGATCTTGCCTTGATAAAATTGTCAGTGATGATGACTACTGTGATGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELM2

Protein Analysis

473

Amino Acids

53.15

Weight (kDa)

6.38

Isoelectric Point (pI)

50.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004237)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12001 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700
malus_domestica	MD04G1147000.v1.1 MD12G1160300.v1.1
prunus_persica	Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1
pyrus_communis	pycom04g13280 pycom12g15210
rosa_chinensis	RchiOBHm_Chr3g0463841 RchiOBHm_Chr3g0470651
rosa_laevigata	RLG00000024250 RLG00000024752
rosa_multiflora	Rmu_co8471153.1_g000001 Rmu_sc0004796.1_g000007
rosa_roxburghii	Rroxscaffold_6G00410630
rosa_rugosa	Rorug03G0068200 Rorug03G0068300 Rorug03G0111300 Rorug03G0111400
rosa_samantha	Rh3AG125500 Rh3AG161000 Rh3BG129600 Rh3BG185600 Rh3CG132100 Rh3CG175900 Rh3DG189200
rosa_wichuraiana	Rw3G010590 Rw3G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	502
AciI	CCGC	1 cut(s)	630
AclWI	GGATC	1 cut(s)	81
AcoI	YGGCCR	1 cut(s)	877
AcsI	RAATTY	5 cut(s)	351, 405, 442, 1178, 1198
AcuI	CTGAAG	2 cut(s)	735, 915
AfeI	AGCGCT	1 cut(s)	1286
AfiI	CCNNNNNNNGG	3 cut(s)	179, 998, 999
AflIII	ACRYGT	1 cut(s)	980
AgeI	ACCGGT	1 cut(s)	916
AgsI	TTSAA	8 cut(s)	215, 637, 701, 737, 957, 1126, 1203, 1223
AjnI	CCWGG	3 cut(s)	157, 178, 1072
AleI	CACNNNNGTG	1 cut(s)	985
AluBI	AGCT	6 cut(s)	188, 591, 755, 767, 1273, 1320
AluI	AGCT	6 cut(s)	188, 591, 755, 767, 1273, 1320
Alw21I	GWGCWC	2 cut(s)	529, 593
Alw26I	GTCTC	4 cut(s)	376, 1039, 1072, 1103
AlwI	GGATC	1 cut(s)	81
Aor13HI	TCCGGA	1 cut(s)	502
Aor51HI	AGCGCT	1 cut(s)	1286
AoxI	GGCC	3 cut(s)	142, 877, 989
ApoI	RAATTY	5 cut(s)	351, 405, 442, 1178, 1198
AsiGI	ACCGGT	1 cut(s)	916
AspLEI	GCGC	3 cut(s)	308, 1287, 1302
AspS9I	GGNCC	4 cut(s)	864, 914, 990, 1139
AsuHPI	GGTGA	1 cut(s)	749
AsuII	TTCGAA	1 cut(s)	859
AvaII	GGWCC	3 cut(s)	864, 914, 1139
AxyI	CCTNAGG	1 cut(s)	795
BanII	GRGCYC	1 cut(s)	593
Bbv12I	GWGCWC	2 cut(s)	529, 593
BccI	CCATC	3 cut(s)	839, 1001, 1253
BceAI	ACGGC	1 cut(s)	864
BciT130I	CCWGG	3 cut(s)	159, 180, 1074
BclI	TGATCA	2 cut(s)	274, 337
BcoDI	GTCTC	4 cut(s)	376, 1039, 1072, 1103
BfaI	CTAG	4 cut(s)	801, 1344, 1365, 1417
BfmI	CTRYAG	2 cut(s)	762, 1150
BfoI	RGCGCY	2 cut(s)	309, 1288
BglII	AGATCT	1 cut(s)	1367
Bme1390I	CCNGG	3 cut(s)	159, 180, 1074
Bme18I	GGWCC	3 cut(s)	864, 914, 1139
BmgT120I	GGNCC	4 cut(s)	864, 914, 990, 1139
BmiI	GGNNCC	1 cut(s)	1018
BmrFI	CCNGG	3 cut(s)	159, 180, 1074
BmsI	GCATC	1 cut(s)	613
BoxI	GACNNNNGTC	1 cut(s)	1051
BplI	GAGNNNNNCTC	2 cut(s)	1043, 1075
BpmI	CTGGAG	1 cut(s)	1056
Bpu14I	TTCGAA	1 cut(s)	859
BsaAI	YACGTR	1 cut(s)	983
BsaBI	GATNNNNATC	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	1039
BsaJI	CCNNGG	4 cut(s)	157, 178, 254, 580
BsaWI	WCCGGW	2 cut(s)	502, 916
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 994, 1024
Bsc4I	CCNNNNNNNGG	3 cut(s)	179, 998, 999
Bse118I	RCCGGY	1 cut(s)	916
Bse21I	CCTNAGG	1 cut(s)	795
Bse3DI	GCAATG	1 cut(s)	1013
Bse8I	GATNNNNATC	1 cut(s)	465
BseAI	TCCGGA	1 cut(s)	502
BseBI	CCWGG	3 cut(s)	159, 180, 1074
BseDI	CCNNGG	4 cut(s)	157, 178, 254, 580
BseGI	GGATG	5 cut(s)	466, 511, 952, 1082, 1338
BseJI	GATNNNNATC	1 cut(s)	465
BseLI	CCNNNNNNNGG	3 cut(s)	179, 998, 999
BseMI	GCAATG	1 cut(s)	1013
BseMII	CTCAG	7 cut(s)	132, 315, 387, 571, 819, 1041, 1179
BseRI	GAGGAG	3 cut(s)	243, 797, 1029
BshFI	GGCC	3 cut(s)	144, 879, 991
BshTI	ACCGGT	1 cut(s)	916
BsiHKAI	GWGCWC	2 cut(s)	529, 593
BsiSI	CCGG	2 cut(s)	503, 917
BslFI	GGGAC	2 cut(s)	237, 471
BslI	CCNNNNNNNGG	3 cut(s)	179, 998, 999
BsmAI	GTCTC	4 cut(s)	376, 1039, 1072, 1103
BsmFI	GGGAC	2 cut(s)	237, 471
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	3 cut(s)	144, 879, 991
Bso31I	GGTCTC	1 cut(s)	1039
Bsp119I	TTCGAA	1 cut(s)	859
Bsp1286I	GDGCHC	2 cut(s)	529, 593
Bsp13I	TCCGGA	1 cut(s)	502
Bsp143I	GATC	4 cut(s)	73, 274, 337, 1367
Bsp19I	CCATGG	1 cut(s)	580
BspACI	CCGC	1 cut(s)	630
BspANI	GGCC	3 cut(s)	144, 879, 991
BspCNI	CTCAG	7 cut(s)	131, 314, 386, 570, 820, 1042, 1180
BspEI	TCCGGA	1 cut(s)	502
BspHI	TCATGA	1 cut(s)	1105
BspLI	GGNNCC	1 cut(s)	1018
BspMAI	CTGCAG	1 cut(s)	1154
BspPI	GGATC	1 cut(s)	81
BspQI	GCTCTTC	1 cut(s)	1301
BspT104I	TTCGAA	1 cut(s)	859
BspTNI	GGTCTC	1 cut(s)	1039
BsrDI	GCAATG	1 cut(s)	1013
BsrFI	RCCGGY	1 cut(s)	916
BssAI	RCCGGY	1 cut(s)	916
BssECI	CCNNGG	4 cut(s)	157, 178, 254, 580
BssMI	GATC	4 cut(s)	73, 274, 337, 1367
BssT1I	CCWWGG	1 cut(s)	580
Bst2UI	CCWGG	3 cut(s)	159, 180, 1074
Bst4CI	ACNGT	5 cut(s)	480, 499, 524, 659, 1406
Bst6I	CTCTTC	2 cut(s)	341, 1301
BstAPI	GCANNNNNTGC	1 cut(s)	56
BstBAI	YACGTR	1 cut(s)	983
BstBI	TTCGAA	1 cut(s)	859
BstC8I	GCNNGC	1 cut(s)	1275
BstDEI	CTNAG	9 cut(s)	118, 284, 301, 373, 557, 795, 828, 1050, 1188
BstDSI	CCRYGG	1 cut(s)	580
BstF5I	GGATG	5 cut(s)	466, 511, 952, 1082, 1338
BstH2I	RGCGCY	2 cut(s)	309, 1288
BstHHI	GCGC	3 cut(s)	308, 1287, 1302
BstKTI	GATC	4 cut(s)	76, 277, 340, 1370
BstMAI	GTCTC	4 cut(s)	376, 1039, 1072, 1103
BstMBI	GATC	4 cut(s)	73, 274, 337, 1367
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 638, 1308, 1317
BstNI	CCWGG	3 cut(s)	159, 180, 1074
BstPAI	GACNNNNGTC	1 cut(s)	1051
BstSCI	CCNGG	3 cut(s)	157, 178, 1072
BstSFI	CTRYAG	2 cut(s)	762, 1150
BstX2I	RGATCY	1 cut(s)	1367
BstXI	CCANNNNNNTGG	1 cut(s)	198
BstYI	RGATCY	1 cut(s)	1367
Bsu36I	CCTNAGG	1 cut(s)	795
BsuRI	GGCC	3 cut(s)	144, 879, 991
BtgI	CCRYGG	1 cut(s)	580
BtsCI	GGATG	5 cut(s)	466, 511, 952, 1082, 1338
BtsIMutI	CAGTG	3 cut(s)	485, 565, 1396
Cac8I	GCNNGC	1 cut(s)	1275
CciI	TCATGA	1 cut(s)	1105
CfoI	GCGC	3 cut(s)	308, 1287, 1302
Cfr10I	RCCGGY	1 cut(s)	916
Cfr13I	GGNCC	4 cut(s)	864, 914, 990, 1139
CspAI	ACCGGT	1 cut(s)	916
CviAII	CATG	6 cut(s)	67, 341, 433, 581, 1106, 1194
DdeI	CTNAG	9 cut(s)	118, 284, 301, 373, 557, 795, 828, 1050, 1188
DpnI	GATC	4 cut(s)	75, 276, 339, 1369
DpnII	GATC	4 cut(s)	73, 274, 337, 1367
EaeI	YGGCCR	1 cut(s)	877
Eam1104I	CTCTTC	2 cut(s)	341, 1301
EarI	CTCTTC	2 cut(s)	341, 1301
Ecl136II	GAGCTC	1 cut(s)	591
Eco130I	CCWWGG	1 cut(s)	580
Eco147I	AGGCCT	1 cut(s)	144
Eco24I	GRGCYC	1 cut(s)	593
Eco31I	GGTCTC	1 cut(s)	1039
Eco47I	GGWCC	3 cut(s)	864, 914, 1139
Eco47III	AGCGCT	1 cut(s)	1286
Eco53kI	GAGCTC	1 cut(s)	591
Eco57I	CTGAAG	2 cut(s)	735, 915
Eco81I	CCTNAGG	1 cut(s)	795
EcoICRI	GAGCTC	1 cut(s)	591
EcoRI	GAATTC	1 cut(s)	1198
EcoRII	CCWGG	3 cut(s)	157, 178, 1072
EcoT14I	CCWWGG	1 cut(s)	580
EcoT38I	GRGCYC	1 cut(s)	593
ErhI	CCWWGG	1 cut(s)	580
FaeI	CATG	6 cut(s)	70, 344, 436, 584, 1109, 1197
FalI	AAGNNNNNCTT	4 cut(s)	599, 631, 1262, 1294
FaqI	GGGAC	2 cut(s)	237, 471
FatI	CATG	6 cut(s)	66, 340, 432, 580, 1105, 1193
FbaI	TGATCA	2 cut(s)	274, 337
FokI	GGATG	5 cut(s)	473, 518, 959, 1089, 1325
FriOI	GRGCYC	1 cut(s)	593
FspBI	CTAG	4 cut(s)	801, 1344, 1365, 1417
GlaI	GCGC	3 cut(s)	307, 1286, 1301
GsuI	CTGGAG	1 cut(s)	1056
HaeII	RGCGCY	2 cut(s)	309, 1288
HaeIII	GGCC	3 cut(s)	144, 879, 991
HapII	CCGG	2 cut(s)	503, 917
HhaI	GCGC	3 cut(s)	308, 1287, 1302
Hin1II	CATG	6 cut(s)	70, 344, 436, 584, 1109, 1197
Hin6I	GCGC	3 cut(s)	306, 1285, 1300
HinP1I	GCGC	3 cut(s)	306, 1285, 1300
HincII	GTYRAC	1 cut(s)	655
HindII	GTYRAC	1 cut(s)	655
HindIII	AAGCTT	1 cut(s)	1271
HpaII	CCGG	2 cut(s)	503, 917
HphI	GGTGA	1 cut(s)	749
Hpy166II	GTNNAC	4 cut(s)	170, 428, 655, 909
Hpy188III	TCNNGA	8 cut(s)	29, 212, 397, 438, 488, 503, 902, 1106
Hpy8I	GTNNAC	4 cut(s)	170, 428, 655, 909
HpyAV	CCTTC	3 cut(s)	631, 855, 1156
HpyCH4III	ACNGT	5 cut(s)	480, 499, 524, 659, 1406
HpyCH4IV	ACGT	2 cut(s)	982, 1348
HpyCH4V	TGCA	4 cut(s)	149, 534, 626, 1152
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 638, 1308, 1317
HpyF3I	CTNAG	9 cut(s)	118, 284, 301, 373, 557, 795, 828, 1050, 1188
HpySE526I	ACGT	2 cut(s)	982, 1348
Hsp92II	CATG	6 cut(s)	70, 344, 436, 584, 1109, 1197
HspAI	GCGC	3 cut(s)	306, 1285, 1300
Kpn2I	TCCGGA	1 cut(s)	502
Ksp22I	TGATCA	2 cut(s)	274, 337
Kzo9I	GATC	4 cut(s)	73, 274, 337, 1367
LguI	GCTCTTC	1 cut(s)	1301
LmnI	GCTCC	2 cut(s)	193, 1016
LweI	GCATC	1 cut(s)	613
MaeI	CTAG	4 cut(s)	801, 1344, 1365, 1417
MaeII	ACGT	2 cut(s)	982, 1348
MaeIII	GTNAC	2 cut(s)	29, 745
MalI	GATC	4 cut(s)	75, 276, 339, 1369
MboI	GATC	4 cut(s)	73, 274, 337, 1367
MboII	GAAGA	3 cut(s)	337, 358, 1318
MfeI	CAATTG	2 cut(s)	150, 1032
MflI	RGATCY	1 cut(s)	1367
MhlI	GDGCHC	2 cut(s)	529, 593
MlyI	GAGTC	5 cut(s)	110, 211, 217, 1061, 1199
MmeI	TCCRAC	2 cut(s)	636, 1136
MroI	TCCGGA	1 cut(s)	502
MseI	TTAA	4 cut(s)	137, 930, 1026, 1281
MslI	CAYNNNNRTG	5 cut(s)	128, 196, 983, 985, 1104
MspI	CCGG	2 cut(s)	503, 917
MspR9I	CCNGG	3 cut(s)	159, 180, 1074
MunI	CAATTG	2 cut(s)	150, 1032
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	3 cut(s)	159, 180, 1074
MwoI	GCNNNNNNNGC	4 cut(s)	56, 638, 1308, 1317
NcoI	CCATGG	1 cut(s)	580
NdeII	GATC	4 cut(s)	73, 274, 337, 1367
NlaIII	CATG	6 cut(s)	70, 344, 436, 584, 1109, 1197
NlaIV	GGNNCC	1 cut(s)	1018
NmuCI	GTSAC	1 cut(s)	29
NspV	TTCGAA	1 cut(s)	859
OliI	CACNNNNGTG	1 cut(s)	985
PagI	TCATGA	1 cut(s)	1105
PceI	AGGCCT	1 cut(s)	144
PciSI	GCTCTTC	1 cut(s)	1301
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PctI	GAATGC	1 cut(s)	364
PfeI	GAWTC	6 cut(s)	297, 647, 689, 832, 953, 1223
PfoI	TCCNGGA	1 cut(s)	1072
PinAI	ACCGGT	1 cut(s)	916
PleI	GAGTC	5 cut(s)	110, 210, 216, 1060, 1198
PpsI	GAGTC	5 cut(s)	110, 210, 216, 1060, 1198
Ppu21I	YACGTR	1 cut(s)	983
PshAI	GACNNNNGTC	1 cut(s)	1051
Psp124BI	GAGCTC	1 cut(s)	593
Psp6I	CCWGG	3 cut(s)	157, 178, 1072
PspGI	CCWGG	3 cut(s)	157, 178, 1072
PspN4I	GGNNCC	1 cut(s)	1018
PspPI	GGNCC	4 cut(s)	864, 914, 990, 1139
PstI	CTGCAG	1 cut(s)	1154
PsuI	RGATCY	1 cut(s)	1367
RseI	CAYNNNNRTG	5 cut(s)	128, 196, 983, 985, 1104
SacI	GAGCTC	1 cut(s)	593
SapI	GCTCTTC	1 cut(s)	1301
SaqAI	TTAA	4 cut(s)	137, 930, 1026, 1281
Sau3AI	GATC	4 cut(s)	73, 274, 337, 1367
Sau96I	GGNCC	4 cut(s)	864, 914, 990, 1139
SchI	GAGTC	5 cut(s)	110, 211, 217, 1061, 1199
ScrFI	CCNGG	3 cut(s)	159, 180, 1074
SduI	GDGCHC	2 cut(s)	529, 593
SfaNI	GCATC	1 cut(s)	613
SfcI	CTRYAG	2 cut(s)	762, 1150
SfuI	TTCGAA	1 cut(s)	859
SinI	GGWCC	3 cut(s)	864, 914, 1139
SmiMI	CAYNNNNRTG	5 cut(s)	128, 196, 983, 985, 1104
SseBI	AGGCCT	1 cut(s)	144
SsiI	CCGC	1 cut(s)	630
SspI	AATATT	1 cut(s)	810
SspMI	CTAG	4 cut(s)	801, 1344, 1365, 1417
SstI	GAGCTC	1 cut(s)	593
StuI	AGGCCT	1 cut(s)	144
StyD4I	CCNGG	3 cut(s)	157, 178, 1072
StyI	CCWWGG	1 cut(s)	580
TaaI	ACNGT	5 cut(s)	480, 499, 524, 659, 1406
TaiI	ACGT	2 cut(s)	985, 1351
TaqI	TCGA	3 cut(s)	11, 469, 859
TfiI	GAWTC	6 cut(s)	297, 647, 689, 832, 953, 1223
Tru1I	TTAA	4 cut(s)	137, 930, 1026, 1281
Tru9I	TTAA	4 cut(s)	137, 930, 1026, 1281
TscAI	CASTG	3 cut(s)	485, 565, 1396
TseFI	GTSAC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	29
TspDTI	ATGAA	8 cut(s)	338, 417, 435, 477, 651, 759, 1094, 1327
TspGWI	ACGGA	1 cut(s)	856
TspRI	CASTG	3 cut(s)	485, 565, 1396
VpaK11BI	GGWCC	3 cut(s)	864, 914, 1139
XapI	RAATTY	5 cut(s)	351, 405, 442, 1178, 1198
XspI	CTAG	4 cut(s)	801, 1344, 1365, 1417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.