Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0004237

Physical Location & Seq

Genomic Coordinates Forward (+)

38762234 .. 38765185

Gene Structure 2952 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024752

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1317 bp

ATGGTAGGAGACTTCAGCATGACCATGGTGCTTGGGCAGACAGTCTCAAACTGCAGGCGTGACATCCGAGTGAACAACATATTGAGAGTAAGCGAAAACTTGACCAGTTCCTTAAAGGTTGAAACTACGTACCTTGGCGCTTCTGGAATGGCTACTAGGACATCTGATGATCATCGAGTCAAGAGAATTCGTACTGGCCATTCTGTCTCATGCTTAACCAACACAAGTGAAAACAATCAAATCTTCAAACCACAGCCTGTCTGTAACTCAAACAGTTCTGGAAGTTTGTTGACAATTGAGGATGAATATAAACTGAAGCCAGCTTATGATTTGACCATTCTGGATGATATGAGAAAATATGGTCCATCATGCAAAATTTATCCTGCCTCCTCCTTAATGGATACCGATGAATCAGGCCATGGCTGGACCATTGTGGATGATATGGAACAATATGGTAACTCCTGCAAGGAGTTTTCTACCTCTGCCTTAATTGATAGAGAAAAGTCAGCCCATGGTTCAAACAAGTTAACTCCAGAATACTCCAACCTTTGTAATGCAACCTCTACGAATGTTAATGATTCAGTCAATAGTTCGGATTCTTCAAGTTTAGATGAGTGTGATTCAGAACTTGAAAGAGCTTTGAGGTTATTGATTTCCAGTGATGATGATCTTCCAAGATCTACTCCTTCAGCTCACTCTTCAGCTTCACTGAGGTCGAGCAATAGAAATTCAAAGGCTGCAGAAATATTGAGATTGCTCTTCTCAGATGGTCAGTATTTTCGAAAGTCTGTTCCAATTGGGCCTGGTTTTCAGGCTGAAGTTCCTGAGTGGACAGGTCCTGTCAATAGGAAAAATCGTTACGGTGGTGATGCTTCAAAGAAGTGGTTGGGCACTCGAATGTATCCCATCAAACGGTTAAAAAATGCAGGAACTGATACAAAATCGATTGGGAAGGGGAGACCTGACTCTTGTTCTTGTGTCTCTCCTGGATCTGCTGGTTGTGTCAAACACCACATCGATGAAGCGAGACTCCGTTTGCAAGCCGAAATTGGTCCTGCATTCCGGTCTTGGAAGTTTGATGAAATGGGAGAATTTGCCTCGAAGTCATGGACTTTGAAAGAACAAAGTACCTTCGAATCTCTAGTGAGAAAGAATCCGCTATCAAATGAAACAAGCTTTTGGAAGCTTGCCTTTAAGCGTTTTCCTAATAAATGCAGGAAAAGCATTGTGAGTTATTACAATAACGTGTTCATAACTAGACGCATGAGCCTCCAGACTAGGTCTTCTGTTGATGAAATTGAGAGTGATGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELM2

Protein Analysis

439

Amino Acids

48.85

Weight (kDa)

8.38

Isoelectric Point (pI)

47.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004237)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12001 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700
malus_domestica	MD04G1147000.v1.1 MD12G1160300.v1.1
prunus_persica	Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1
pyrus_communis	pycom04g13280 pycom12g15210
rosa_chinensis	RchiOBHm_Chr3g0463841 RchiOBHm_Chr3g0470651
rosa_laevigata	RLG00000024250 RLG00000024752
rosa_multiflora	Rmu_co8471153.1_g000001 Rmu_sc0004796.1_g000007
rosa_roxburghii	Rroxscaffold_6G00410630
rosa_rugosa	Rorug03G0068200 Rorug03G0068300 Rorug03G0111300 Rorug03G0111400
rosa_samantha	Rh3AG125500 Rh3AG161000 Rh3BG129600 Rh3BG185600 Rh3CG132100 Rh3CG175900 Rh3DG189200
rosa_wichuraiana	Rw3G010590 Rw3G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	1157
AclWI	GGATC	1 cut(s)	997
AcoI	YGGCCR	1 cut(s)	196
AcsI	RAATTY	4 cut(s)	186, 375, 727, 1091
AcuI	CTGAAG	4 cut(s)	335, 672, 684, 837
AfaI	GTAC	3 cut(s)	131, 193, 1129
AfiI	CCNNNNNNNGG	1 cut(s)	912
AflIII	ACRYGT	1 cut(s)	1245
AgsI	TTSAA	8 cut(s)	122, 247, 519, 603, 632, 732, 876, 1117
AjnI	CCWGG	2 cut(s)	802, 985
AluBI	AGCT	6 cut(s)	323, 638, 692, 704, 1176, 1186
AluI	AGCT	6 cut(s)	323, 638, 692, 704, 1176, 1186
Alw26I	GTCTC	6 cut(s)	3, 49, 211, 952, 985, 1021
AlwI	GGATC	1 cut(s)	997
AlwNI	CAGNNNCTG	2 cut(s)	839, 932
AoxI	GGCC	3 cut(s)	196, 415, 800
ApeKI	GCWGC	1 cut(s)	737
ApoI	RAATTY	4 cut(s)	186, 375, 727, 1091
AspLEI	GCGC	1 cut(s)	140
AspS9I	GGNCC	5 cut(s)	362, 426, 800, 836, 1052
AsuHPI	GGTGA	1 cut(s)	878
AsuII	TTCGAA	2 cut(s)	781, 1134
AvaII	GGWCC	4 cut(s)	362, 426, 836, 1052
BaeGI	GKGCMC	1 cut(s)	893
BalI	TGGCCA	1 cut(s)	198
BbsI	GAAGAC	1 cut(s)	1275
BbvI	GCAGC	1 cut(s)	724
BccI	CCATC	3 cut(s)	373, 761, 914
BciT130I	CCWGG	2 cut(s)	804, 987
BciVI	GTATCC	2 cut(s)	394, 912
BclI	TGATCA	1 cut(s)	169
BcoDI	GTCTC	6 cut(s)	3, 49, 211, 952, 985, 1021
BfaI	CTAG	5 cut(s)	156, 1142, 1257, 1278, 1315
BfmI	CTRYAG	2 cut(s)	52, 738
BfoI	RGCGCY	1 cut(s)	141
BfuI	GTATCC	2 cut(s)	394, 912
BglII	AGATCT	1 cut(s)	677
BisI	GCNGC	1 cut(s)	738
BlsI	GCNGC	1 cut(s)	739
Bme1390I	CCNGG	2 cut(s)	804, 987
Bme18I	GGWCC	4 cut(s)	362, 426, 836, 1052
BmgT120I	GGNCC	5 cut(s)	362, 426, 800, 836, 1052
BmrFI	CCNGG	2 cut(s)	804, 987
BmsI	GCATC	1 cut(s)	859
BpiI	GAAGAC	1 cut(s)	1275
BpmI	CTGGAG	2 cut(s)	516, 1256
Bpu14I	TTCGAA	2 cut(s)	781, 1134
Bsa29I	ATCGAT	2 cut(s)	944, 1017
BsaAI	YACGTR	1 cut(s)	129
BsaBI	GATNNNNATC	2 cut(s)	171, 666
BsaI	GGTCTC	1 cut(s)	952
BsaJI	CCNNGG	4 cut(s)	24, 133, 418, 511
BsaWI	WCCGGW	1 cut(s)	1062
Bsc4I	CCNNNNNNNGG	1 cut(s)	912
Bse1I	ACTGG	3 cut(s)	105, 199, 657
Bse8I	GATNNNNATC	2 cut(s)	171, 666
BseBI	CCWGG	2 cut(s)	804, 987
BseCI	ATCGAT	2 cut(s)	944, 1017
BseDI	CCNNGG	4 cut(s)	24, 133, 418, 511
BseGI	GGATG	4 cut(s)	63, 307, 349, 442
BseJI	GATNNNNATC	2 cut(s)	171, 666
BseLI	CCNNNNNNNGG	1 cut(s)	912
BseMII	CTCAG	3 cut(s)	701, 777, 816
BseNI	ACTGG	3 cut(s)	105, 199, 657
BseRI	GAGGAG	1 cut(s)	379
BseSI	GKGCMC	1 cut(s)	893
BseXI	GCAGC	1 cut(s)	724
BshFI	GGCC	3 cut(s)	198, 417, 802
BshVI	ATCGAT	2 cut(s)	944, 1017
BsiSI	CCGG	1 cut(s)	1063
BslI	CCNNNNNNNGG	1 cut(s)	912
BsmAI	GTCTC	6 cut(s)	3, 49, 211, 952, 985, 1021
BsmI	GAATGC	1 cut(s)	1058
BsnI	GGCC	3 cut(s)	198, 417, 802
Bso31I	GGTCTC	1 cut(s)	952
Bsp119I	TTCGAA	2 cut(s)	781, 1134
Bsp1286I	GDGCHC	1 cut(s)	893
Bsp143I	GATC	4 cut(s)	169, 667, 677, 989
Bsp19I	CCATGG	3 cut(s)	24, 418, 511
BspACI	CCGC	1 cut(s)	1157
BspANI	GGCC	3 cut(s)	198, 417, 802
BspCNI	CTCAG	3 cut(s)	702, 776, 817
BspDI	ATCGAT	2 cut(s)	944, 1017
BspMAI	CTGCAG	2 cut(s)	56, 742
BspPI	GGATC	1 cut(s)	997
BspQI	GCTCTTC	1 cut(s)	764
BspT104I	TTCGAA	2 cut(s)	781, 1134
BspTNI	GGTCTC	1 cut(s)	952
BsrI	ACTGG	3 cut(s)	105, 199, 657
BssECI	CCNNGG	4 cut(s)	24, 133, 418, 511
BssMI	GATC	4 cut(s)	169, 667, 677, 989
BssT1I	CCWWGG	4 cut(s)	24, 133, 418, 511
Bst2UI	CCWGG	2 cut(s)	804, 987
Bst4CI	ACNGT	4 cut(s)	43, 275, 863, 915
Bst6I	CTCTTC	2 cut(s)	703, 764
BstBAI	YACGTR	1 cut(s)	129
BstBI	TTCGAA	2 cut(s)	781, 1134
BstC8I	GCNNGC	4 cut(s)	56, 321, 1041, 1188
BstDEI	CTNAG	3 cut(s)	710, 763, 825
BstDSI	CCRYGG	3 cut(s)	24, 418, 511
BstF5I	GGATG	4 cut(s)	63, 307, 349, 442
BstH2I	RGCGCY	1 cut(s)	141
BstHHI	GCGC	1 cut(s)	140
BstKTI	GATC	4 cut(s)	172, 670, 680, 992
BstMAI	GTCTC	6 cut(s)	3, 49, 211, 952, 985, 1021
BstMBI	GATC	4 cut(s)	169, 667, 677, 989
BstMWI	GCNNNNNNNGC	1 cut(s)	1221
BstNI	CCWGG	2 cut(s)	804, 987
BstSCI	CCNGG	2 cut(s)	802, 985
BstSFI	CTRYAG	2 cut(s)	52, 738
BstSLI	GKGCMC	1 cut(s)	893
BstSNI	TACGTA	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	724
BstV2I	GAAGAC	1 cut(s)	1275
BstX2I	RGATCY	2 cut(s)	677, 989
BstYI	RGATCY	2 cut(s)	677, 989
Bsu15I	ATCGAT	2 cut(s)	944, 1017
BsuI	GTATCC	2 cut(s)	394, 912
BsuRI	GGCC	3 cut(s)	198, 417, 802
BsuTUI	ATCGAT	2 cut(s)	944, 1017
BtgI	CCRYGG	3 cut(s)	24, 418, 511
BtsCI	GGATG	4 cut(s)	63, 307, 349, 442
BtsIMutI	CAGTG	2 cut(s)	664, 707
Cac8I	GCNNGC	4 cut(s)	56, 321, 1041, 1188
CaiI	CAGNNNCTG	2 cut(s)	839, 932
CfoI	GCGC	1 cut(s)	140
Cfr13I	GGNCC	5 cut(s)	362, 426, 800, 836, 1052
ClaI	ATCGAT	2 cut(s)	944, 1017
CseI	GACGC	1 cut(s)	1269
Csp6I	GTAC	3 cut(s)	130, 192, 1128
CviAII	CATG	8 cut(s)	19, 25, 210, 369, 419, 512, 1107, 1264
CviQI	GTAC	3 cut(s)	130, 192, 1128
DdeI	CTNAG	3 cut(s)	710, 763, 825
DpnI	GATC	4 cut(s)	171, 669, 679, 991
DpnII	GATC	4 cut(s)	169, 667, 677, 989
EaeI	YGGCCR	1 cut(s)	196
Eam1104I	CTCTTC	2 cut(s)	703, 764
EarI	CTCTTC	2 cut(s)	703, 764
Eco105I	TACGTA	1 cut(s)	129
Eco130I	CCWWGG	4 cut(s)	24, 133, 418, 511
Eco31I	GGTCTC	1 cut(s)	952
Eco47I	GGWCC	4 cut(s)	362, 426, 836, 1052
Eco57I	CTGAAG	4 cut(s)	335, 672, 684, 837
EcoO109I	RGGNCCY	1 cut(s)	836
EcoRI	GAATTC	1 cut(s)	186
EcoRII	CCWGG	2 cut(s)	802, 985
EcoT14I	CCWWGG	4 cut(s)	24, 133, 418, 511
ErhI	CCWWGG	4 cut(s)	24, 133, 418, 511
FaeI	CATG	8 cut(s)	22, 28, 213, 372, 422, 515, 1110, 1267
FalI	AAGNNNNNCTT	2 cut(s)	1175, 1207
FatI	CATG	8 cut(s)	18, 24, 209, 368, 418, 511, 1106, 1263
FbaI	TGATCA	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	738
FokI	GGATG	4 cut(s)	50, 314, 356, 449
Fsp4HI	GCNGC	1 cut(s)	738
FspBI	CTAG	5 cut(s)	156, 1142, 1257, 1278, 1315
GlaI	GCGC	1 cut(s)	139
GluI	GCNGC	1 cut(s)	738
GsuI	CTGGAG	2 cut(s)	516, 1256
HaeII	RGCGCY	1 cut(s)	141
HaeIII	GGCC	3 cut(s)	198, 417, 802
HapII	CCGG	1 cut(s)	1063
HgaI	GACGC	1 cut(s)	1269
HhaI	GCGC	1 cut(s)	140
Hin1II	CATG	8 cut(s)	22, 28, 213, 372, 422, 515, 1110, 1267
Hin6I	GCGC	1 cut(s)	138
HinP1I	GCGC	1 cut(s)	138
HincII	GTYRAC	2 cut(s)	291, 528
HindII	GTYRAC	2 cut(s)	291, 528
HindIII	AAGCTT	2 cut(s)	1174, 1184
HinfI	GANTC	9 cut(s)	177, 410, 578, 596, 620, 965, 1029, 1136, 1153
HpaI	GTTAAC	1 cut(s)	528
HpaII	CCGG	1 cut(s)	1063
HphI	GGTGA	1 cut(s)	878
Hpy166II	GTNNAC	4 cut(s)	73, 291, 528, 831
Hpy188I	TCNGA	5 cut(s)	68, 166, 595, 625, 766
Hpy188III	TCNNGA	7 cut(s)	144, 181, 279, 341, 533, 824, 1273
Hpy8I	GTNNAC	4 cut(s)	73, 291, 528, 831
HpyAV	CCTTC	3 cut(s)	696, 946, 1141
HpyCH4III	ACNGT	4 cut(s)	43, 275, 863, 915
HpyCH4IV	ACGT	2 cut(s)	128, 1245
HpyCH4V	TGCA	9 cut(s)	54, 372, 465, 557, 740, 926, 1039, 1058, 1215
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1221
HpyF3I	CTNAG	3 cut(s)	710, 763, 825
HpySE526I	ACGT	2 cut(s)	128, 1245
Hsp92II	CATG	8 cut(s)	22, 28, 213, 372, 422, 515, 1110, 1267
HspAI	GCGC	1 cut(s)	138
Ksp22I	TGATCA	1 cut(s)	169
KspAI	GTTAAC	1 cut(s)	528
Kzo9I	GATC	4 cut(s)	169, 667, 677, 989
LguI	GCTCTTC	1 cut(s)	764
Lsp1109I	GCAGC	1 cut(s)	724
LweI	GCATC	1 cut(s)	859
MaeI	CTAG	5 cut(s)	156, 1142, 1257, 1278, 1315
MaeII	ACGT	2 cut(s)	128, 1245
MaeIII	GTNAC	4 cut(s)	59, 263, 455, 857
MalI	GATC	4 cut(s)	171, 669, 679, 991
MboI	GATC	4 cut(s)	169, 667, 677, 989
MboII	GAAGA	6 cut(s)	235, 591, 662, 690, 751, 1275
MfeI	CAATTG	2 cut(s)	294, 795
MflI	RGATCY	2 cut(s)	677, 989
MhlI	GDGCHC	1 cut(s)	893
MlsI	TGGCCA	1 cut(s)	198
MluCI	AATT	9 cut(s)	186, 294, 375, 489, 727, 795, 1047, 1091, 1296
MluNI	TGGCCA	1 cut(s)	198
MlyI	GAGTC	3 cut(s)	186, 959, 1023
MmeI	TCCRAC	1 cut(s)	567
MnlI	CCTC	9 cut(s)	292, 397, 400, 490, 571, 636, 705, 1108, 1280
Mox20I	TGGCCA	1 cut(s)	198
MscI	TGGCCA	1 cut(s)	198
MseI	TTAA	8 cut(s)	113, 215, 395, 488, 527, 573, 917, 1194
MslI	CAYNNNNRTG	4 cut(s)	23, 68, 896, 1017
Msp20I	TGGCCA	1 cut(s)	198
MspI	CCGG	1 cut(s)	1063
MspR9I	CCNGG	2 cut(s)	804, 987
MunI	CAATTG	2 cut(s)	294, 795
Mva1269I	GAATGC	1 cut(s)	1058
MvaI	CCWGG	2 cut(s)	804, 987
MwoI	GCNNNNNNNGC	1 cut(s)	1221
NcoI	CCATGG	3 cut(s)	24, 418, 511
NdeII	GATC	4 cut(s)	169, 667, 677, 989
NlaIII	CATG	8 cut(s)	22, 28, 213, 372, 422, 515, 1110, 1267
NmuCI	GTSAC	1 cut(s)	59
NspV	TTCGAA	2 cut(s)	781, 1134
PciSI	GCTCTTC	1 cut(s)	764
PctI	GAATGC	1 cut(s)	1058
PfeI	GAWTC	6 cut(s)	410, 578, 596, 620, 1136, 1153
PflFI	GACNNNGTC	1 cut(s)	1279
PfoI	TCCNGGA	1 cut(s)	985
PkrI	GCNGC	1 cut(s)	739
PleI	GAGTC	3 cut(s)	185, 959, 1023
PpsI	GAGTC	3 cut(s)	185, 959, 1023
Ppu21I	YACGTR	1 cut(s)	129
PpuMI	RGGWCCY	1 cut(s)	836
Psp5II	RGGWCCY	1 cut(s)	836
Psp6I	CCWGG	2 cut(s)	802, 985
PspGI	CCWGG	2 cut(s)	802, 985
PspPI	GGNCC	5 cut(s)	362, 426, 800, 836, 1052
PspPPI	RGGWCCY	1 cut(s)	836
PstI	CTGCAG	2 cut(s)	56, 742
PstNI	CAGNNNCTG	2 cut(s)	839, 932
PsuI	RGATCY	2 cut(s)	677, 989
PsyI	GACNNNGTC	1 cut(s)	1279
RsaI	GTAC	3 cut(s)	131, 193, 1129
RsaNI	GTAC	3 cut(s)	130, 192, 1128
RseI	CAYNNNNRTG	4 cut(s)	23, 68, 896, 1017
SapI	GCTCTTC	1 cut(s)	764
SaqAI	TTAA	8 cut(s)	113, 215, 395, 488, 527, 573, 917, 1194
SatI	GCNGC	1 cut(s)	738
Sau3AI	GATC	4 cut(s)	169, 667, 677, 989
Sau96I	GGNCC	5 cut(s)	362, 426, 800, 836, 1052
SchI	GAGTC	3 cut(s)	186, 959, 1023
ScrFI	CCNGG	2 cut(s)	804, 987
SduI	GDGCHC	1 cut(s)	893
SfaNI	GCATC	1 cut(s)	859
SfcI	CTRYAG	2 cut(s)	52, 738
SfuI	TTCGAA	2 cut(s)	781, 1134
SinI	GGWCC	4 cut(s)	362, 426, 836, 1052
SmiMI	CAYNNNNRTG	4 cut(s)	23, 68, 896, 1017
SnaBI	TACGTA	1 cut(s)	129
Sse9I	AATT	9 cut(s)	186, 294, 375, 489, 727, 795, 1047, 1091, 1296
SsiI	CCGC	1 cut(s)	1157
SspI	AATATT	1 cut(s)	747
SspMI	CTAG	5 cut(s)	156, 1142, 1257, 1278, 1315
StyD4I	CCNGG	2 cut(s)	802, 985
StyI	CCWWGG	4 cut(s)	24, 133, 418, 511
TaaI	ACNGT	4 cut(s)	43, 275, 863, 915
TaiI	ACGT	2 cut(s)	131, 1248
TaqI	TCGA	8 cut(s)	175, 716, 781, 895, 944, 1017, 1100, 1134
TasI	AATT	9 cut(s)	186, 294, 375, 489, 727, 795, 1047, 1091, 1296
TfiI	GAWTC	6 cut(s)	410, 578, 596, 620, 1136, 1153
Tru1I	TTAA	8 cut(s)	113, 215, 395, 488, 527, 573, 917, 1194
Tru9I	TTAA	8 cut(s)	113, 215, 395, 488, 527, 573, 917, 1194
TscAI	CASTG	2 cut(s)	664, 714
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	737
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	7 cut(s)	318, 423, 1035, 1095, 1182, 1240, 1308
TspGWI	ACGGA	1 cut(s)	1022
TspRI	CASTG	2 cut(s)	664, 714
Tth111I	GACNNNGTC	1 cut(s)	1279
VpaK11BI	GGWCC	4 cut(s)	362, 426, 836, 1052
XapI	RAATTY	4 cut(s)	186, 375, 727, 1091
XspI	CTAG	5 cut(s)	156, 1142, 1257, 1278, 1315

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.