Rorug03G0111300

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004237
Physical Location & Seq
Reverse (-)
8990327 .. 8990644
318 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0111300.1

Sequence Viewer

Length: 240 bp
ATGATGAGACTGAAGAGGCTTCCAAGGAAGGTATGCATAATGCAACCCCAAATTGAGTCTGTTGCACTGATAGCGGAAAGAAATGGGCTGAGCACGATCGATACCGCGCAGCAGCTGCAAGCAAATGGAAGTAGGATCCGCATTGATGGAGATGACCAGCCTATATATTCTGGATTGCCGGAAATTACTCCTCTGATAGCTCTAAGCAAAAGCTTGGTGATGCATGGGAGAAAAGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2

Protein Analysis

79

Amino Acids

8.78

Weight (kDa)

9.85

Isoelectric Point (pI)

43.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 107
AciI CCGC 3 cut(s) 74, 105, 139
AclWI GGATC 2 cut(s) 130, 143
AcuI CTGAAG 1 cut(s) 32
AluBI AGCT 3 cut(s) 115, 200, 213
AluI AGCT 3 cut(s) 115, 200, 213
Alw21I GWGCWC 1 cut(s) 95
AlwI GGATC 2 cut(s) 130, 143
AlwNI CAGNNNCTG 1 cut(s) 115
ApeKI GCWGC 3 cut(s) 109, 112, 115
AspLEI GCGC 1 cut(s) 109
AsuHPI GGTGA 1 cut(s) 229
BamHI GGATCC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 95
BbvI GCAGC 3 cut(s) 102, 121, 124
BccI CCATC 1 cut(s) 140
BisI GCNGC 3 cut(s) 110, 113, 116
BlpI GCTNAGC 1 cut(s) 89
BlsI GCNGC 3 cut(s) 111, 114, 117
BmiI GGNNCC 1 cut(s) 137
BmsI GCATC 1 cut(s) 210
Bpu1102I GCTNAGC 1 cut(s) 89
Bsa29I ATCGAT 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 23
BseCI ATCGAT 1 cut(s) 99
BseDI CCNNGG 1 cut(s) 23
BseMII CTCAG 1 cut(s) 80
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 3 cut(s) 102, 121, 124
Bsh1236I CGCG 1 cut(s) 107
Bsh1285I CGRYCG 1 cut(s) 99
BshVI ATCGAT 1 cut(s) 99
BsiEI CGRYCG 1 cut(s) 99
BsiHKAI GWGCWC 1 cut(s) 95
BsiSI CCGG 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 95
Bsp143I GATC 2 cut(s) 96, 135
Bsp1720I GCTNAGC 1 cut(s) 89
BspACI CCGC 3 cut(s) 74, 105, 139
BspCNI CTCAG 1 cut(s) 81
BspDI ATCGAT 1 cut(s) 99
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 1 cut(s) 137
BspPI GGATC 2 cut(s) 130, 143
BssECI CCNNGG 1 cut(s) 23
BssMI GATC 2 cut(s) 96, 135
BssT1I CCWWGG 1 cut(s) 23
Bst6I CTCTTC 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 115
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 2 cut(s) 89, 203
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 109
BstKTI GATC 2 cut(s) 99, 138
BstMBI GATC 2 cut(s) 96, 135
BstMCI CGRYCG 1 cut(s) 99
BstMWI GCNNNNNNNGC 2 cut(s) 71, 115
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 3 cut(s) 102, 121, 124
BstX2I RGATCY 1 cut(s) 135
BstYI RGATCY 1 cut(s) 135
Bsu15I ATCGAT 1 cut(s) 99
BsuTUI ATCGAT 1 cut(s) 99
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 120
CaiI CAGNNNCTG 1 cut(s) 115
CfoI GCGC 1 cut(s) 109
ClaI ATCGAT 1 cut(s) 99
CviAII CATG 1 cut(s) 224
CviJI RGCY 6 cut(s) 19, 88, 115, 160, 200, 213
CviKI_1 RGCY 6 cut(s) 19, 88, 115, 160, 200, 213
DdeI CTNAG 2 cut(s) 89, 203
DpnI GATC 2 cut(s) 98, 137
DpnII GATC 2 cut(s) 96, 135
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 23
Eco57I CTGAAG 1 cut(s) 32
EcoT14I CCWWGG 1 cut(s) 23
EcoT22I ATGCAT 2 cut(s) 38, 225
ErhI CCWWGG 1 cut(s) 23
FaeI CATG 1 cut(s) 227
FaiI YATR 5 cut(s) 34, 38, 164, 166, 225
FatI CATG 1 cut(s) 223
Fnu4HI GCNGC 3 cut(s) 110, 113, 116
Fsp4HI GCNGC 3 cut(s) 110, 113, 116
GlaI GCGC 1 cut(s) 108
GluI GCNGC 3 cut(s) 110, 113, 116
HapII CCGG 1 cut(s) 179
HhaI GCGC 1 cut(s) 109
Hin1II CATG 1 cut(s) 227
Hin6I GCGC 1 cut(s) 107
HinP1I GCGC 1 cut(s) 107
HindIII AAGCTT 1 cut(s) 211
HinfI GANTC 1 cut(s) 56
HpaII CCGG 1 cut(s) 179
HphI GGTGA 1 cut(s) 229
Hpy188I TCNGA 1 cut(s) 195
Hpy188III TCNNGA 1 cut(s) 171
HpyAV CCTTC 1 cut(s) 22
HpyCH4V TGCA 5 cut(s) 36, 43, 65, 118, 223
HpyF10VI GCNNNNNNNGC 2 cut(s) 71, 115
HpyF3I CTNAG 2 cut(s) 89, 203
Hsp92II CATG 1 cut(s) 227
HspAI GCGC 1 cut(s) 107
Kzo9I GATC 2 cut(s) 96, 135
LpnPI CCDG 3 cut(s) 156, 170, 192
Lsp1109I GCAGC 3 cut(s) 102, 121, 124
LweI GCATC 1 cut(s) 210
MalI GATC 2 cut(s) 98, 137
MboI GATC 2 cut(s) 96, 135
MboII GAAGA 1 cut(s) 25
MflI RGATCY 1 cut(s) 135
MhlI GDGCHC 1 cut(s) 95
MluCI AATT 2 cut(s) 51, 183
MlyI GAGTC 1 cut(s) 65
MnlI CCTC 2 cut(s) 9, 201
Mph1103I ATGCAT 2 cut(s) 38, 225
MseI TTAA 1 cut(s) 238
MspA1I CMGCKG 1 cut(s) 115
MspI CCGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 2 cut(s) 71, 115
NdeII GATC 2 cut(s) 96, 135
NlaIII CATG 1 cut(s) 227
NlaIV GGNNCC 1 cut(s) 137
NsiI ATGCAT 2 cut(s) 38, 225
PkrI GCNGC 3 cut(s) 111, 114, 117
Ple19I CGATCG 1 cut(s) 99
PleI GAGTC 1 cut(s) 64
PpsI GAGTC 1 cut(s) 64
PspN4I GGNNCC 1 cut(s) 137
PstNI CAGNNNCTG 1 cut(s) 115
PsuI RGATCY 1 cut(s) 135
PvuI CGATCG 1 cut(s) 99
PvuII CAGCTG 1 cut(s) 115
SaqAI TTAA 1 cut(s) 238
SatI GCNGC 3 cut(s) 110, 113, 116
Sau3AI GATC 2 cut(s) 96, 135
SchI GAGTC 1 cut(s) 65
SduI GDGCHC 1 cut(s) 95
SetI ASST 4 cut(s) 33, 117, 202, 215
SfaNI GCATC 1 cut(s) 210
SgeI CNNG 9 cut(s) 36, 106, 118, 131, 169, 183, 191, 226, 236
Sse9I AATT 2 cut(s) 51, 183
SsiI CCGC 3 cut(s) 74, 105, 139
StyI CCWWGG 1 cut(s) 23
TaqI TCGA 1 cut(s) 99
TasI AATT 2 cut(s) 51, 183
Tru1I TTAA 1 cut(s) 238
Tru9I TTAA 1 cut(s) 238
TscAI CASTG 1 cut(s) 72
TseI GCWGC 3 cut(s) 109, 112, 115
TspRI CASTG 1 cut(s) 72
Zsp2I ATGCAT 2 cut(s) 38, 225
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.