Rorug03G0111400

AT-rich interactive domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0004237
Physical Location & Seq
Forward (+)
9004382 .. 9005967
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0111400.1

Sequence Viewer

Length: 765 bp
ATGGCTTGTATAGTTCCTCCCTCTCTGTGCCAAACAGAGGATTTGGGAAGCGAAAATCTCCAAAGGCTTGCCAAACAGCTTCAGTTTTACAAACCACCCAAACCAATTGACGAAGTGGAGGAAAATATTGAGCATGGCATAAATGACGTGTCTTCTTCTGTAAAAATGAGGGAGAGAAGAGCAGCTGTTCTGATATGCCTCTTTGAAGATCCTGAGGGTGAGCTAAGAGTTATTCTTACTAGAAGATCAATGAACTTGGCTTCACATCCAGGTGATGTAGCATTGCCAGGTGGGAAAATGGAGGAGGGAGATGAAGATGAATCTGCAACTGCACTGAGGGAAGCCATGGAAGAGATTGGCCTAGATTCTAGTCTAGTTCAAGTTGTTGCTCAACTAGAGTTCTTTTTATCTCAGCACTTGCTCACAGTTGTCCCTGTAATTGGACTTGTATCCCGGATAGAAGATTTCAAGCCTCTACTCAACGCTGACGAAGTTGATGCTATATTTGATGTCCCATTGGAGATGTTTCTCAAGAAAGAAAATCACAGATTTGAGGAGAGAGAATGGAGGGGATGGAAGTATGTTGTCCATCATTTTGATTTCGAATCCGAGCAAGGAGAGTTTTTAATATGGGGACTAACTGCAAGCATTCTGATTAGAGCTGCCTCTGTTATCTACCAGCAATCTCCATTCTTCCAAGCACATCTCCCTGACTTCCAAACTTTGCAAAGAGCCTTGCATAGTGTTGACTCTAATGTAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ELM2

Protein Analysis

254

Amino Acids

28.81

Weight (kDa)

4.72

Isoelectric Point (pI)

58.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NUDIX PF00293 59 - 186 3e-14 NUDIX domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 203
AcuI CTGAAG 1 cut(s) 65
AfiI CCNNNNNNNGG 2 cut(s) 37, 440
AflIII ACRYGT 1 cut(s) 147
AgsI TTSAA 3 cut(s) 206, 380, 469
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 2 cut(s) 268, 286
AluBI AGCT 4 cut(s) 79, 185, 223, 662
AluI AGCT 4 cut(s) 79, 185, 223, 662
AlwI GGATC 1 cut(s) 203
AoxI GGCC 1 cut(s) 358
ApeKI GCWGC 2 cut(s) 182, 662
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 2 cut(s) 230, 284
AsuII TTCGAA 1 cut(s) 603
AxyI CCTNAGG 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 194, 649
BccI CCATC 2 cut(s) 567, 597
BcgI CGANNNNNNTGC 2 cut(s) 479, 513
BciT130I CCWGG 2 cut(s) 270, 288
BciVI GTATCC 1 cut(s) 460
BcnI CCSGG 1 cut(s) 454
BfaI CTAG 5 cut(s) 240, 362, 369, 374, 395
BfuI GTATCC 1 cut(s) 460
BisI GCNGC 2 cut(s) 183, 663
BlsI GCNGC 2 cut(s) 184, 664
Bme1390I CCNGG 3 cut(s) 270, 288, 454
BmgBI CACGTC 1 cut(s) 148
BmrFI CCNGG 3 cut(s) 270, 288, 454
BmsI GCATC 1 cut(s) 487
BpiI GAAGAC 1 cut(s) 144
Bpu14I TTCGAA 1 cut(s) 603
BpuEI CTTGAG 1 cut(s) 515
BpuMI CCSGG 1 cut(s) 454
BsaJI CCNNGG 1 cut(s) 345
Bsc4I CCNNNNNNNGG 2 cut(s) 37, 440
Bse21I CCTNAGG 1 cut(s) 213
Bse3DI GCAATG 1 cut(s) 281
BseBI CCWGG 2 cut(s) 270, 288
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 2 cut(s) 265, 578
BseLI CCNNNNNNNGG 2 cut(s) 37, 440
BseMI GCAATG 1 cut(s) 281
BseMII CTCAG 3 cut(s) 204, 326, 425
BseRI GAGGAG 2 cut(s) 317, 569
BseXI GCAGC 2 cut(s) 194, 649
BsgI GTGCAG 1 cut(s) 315
BshFI GGCC 1 cut(s) 360
BsiSI CCGG 1 cut(s) 454
BslFI GGGAC 3 cut(s) 416, 497, 648
BslI CCNNNNNNNGG 2 cut(s) 37, 440
BsmFI GGGAC 3 cut(s) 416, 497, 648
BsmI GAATGC 1 cut(s) 648
BsnI GGCC 1 cut(s) 360
Bsp119I TTCGAA 1 cut(s) 603
Bsp143I GATC 2 cut(s) 208, 245
Bsp19I CCATGG 1 cut(s) 345
BspANI GGCC 1 cut(s) 360
BspCNI CTCAG 3 cut(s) 205, 327, 424
BspPI GGATC 1 cut(s) 203
BspQI GCTCTTC 1 cut(s) 172
BspT104I TTCGAA 1 cut(s) 603
BsrDI GCAATG 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 2 cut(s) 208, 245
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 2 cut(s) 270, 288
Bst4CI ACNGT 1 cut(s) 427
Bst6I CTCTTC 2 cut(s) 172, 345
BstBI TTCGAA 1 cut(s) 603
BstC8I GCNNGC 2 cut(s) 69, 646
BstDEI CTNAG 4 cut(s) 213, 224, 335, 411
BstDSI CCRYGG 1 cut(s) 345
BstF5I GGATG 2 cut(s) 265, 578
BstKTI GATC 2 cut(s) 211, 248
BstMBI GATC 2 cut(s) 208, 245
BstNI CCWGG 2 cut(s) 270, 288
BstSCI CCNGG 3 cut(s) 268, 286, 452
BstV1I GCAGC 2 cut(s) 194, 649
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
Bsu36I CCTNAGG 1 cut(s) 213
BsuI GTATCC 1 cut(s) 460
BsuRI GGCC 1 cut(s) 360
BtgI CCRYGG 1 cut(s) 345
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 265, 578
BtsIMutI CAGTG 1 cut(s) 332
Cac8I GCNNGC 2 cut(s) 69, 646
CviAII CATG 3 cut(s) 134, 346, 762
DdeI CTNAG 4 cut(s) 213, 224, 335, 411
DpnI GATC 2 cut(s) 210, 247
DpnII GATC 2 cut(s) 208, 245
Eam1104I CTCTTC 2 cut(s) 172, 345
EarI CTCTTC 2 cut(s) 172, 345
Eco130I CCWWGG 1 cut(s) 345
Eco57I CTGAAG 1 cut(s) 65
Eco81I CCTNAGG 1 cut(s) 213
EcoRII CCWGG 2 cut(s) 268, 286
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 3 cut(s) 137, 349, 765
FaqI GGGAC 3 cut(s) 416, 497, 648
FatI CATG 3 cut(s) 133, 345, 761
Fnu4HI GCNGC 2 cut(s) 183, 663
FokI GGATG 2 cut(s) 252, 585
Fsp4HI GCNGC 2 cut(s) 183, 663
FspBI CTAG 5 cut(s) 240, 362, 369, 374, 395
GluI GCNGC 2 cut(s) 183, 663
HaeIII GGCC 1 cut(s) 360
HapII CCGG 1 cut(s) 454
Hin1II CATG 3 cut(s) 137, 349, 765
HincII GTYRAC 1 cut(s) 748
HindII GTYRAC 1 cut(s) 748
HinfI GANTC 4 cut(s) 320, 365, 605, 749
HpaII CCGG 1 cut(s) 454
HphI GGTGA 2 cut(s) 230, 284
Hpy166II GTNNAC 1 cut(s) 748
Hpy188I TCNGA 3 cut(s) 192, 610, 654
Hpy188III TCNNGA 2 cut(s) 212, 532
Hpy8I GTNNAC 1 cut(s) 748
HpyCH4III ACNGT 1 cut(s) 427
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 5 cut(s) 326, 332, 644, 727, 739
HpyF3I CTNAG 4 cut(s) 213, 224, 335, 411
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 3 cut(s) 137, 349, 765
Kzo9I GATC 2 cut(s) 208, 245
LguI GCTCTTC 1 cut(s) 172
LpnPI CCDG 9 cut(s) 225, 255, 273, 282, 300, 447, 467, 692, 723
Lsp1109I GCAGC 2 cut(s) 194, 649
LweI GCATC 1 cut(s) 487
MaeI CTAG 5 cut(s) 240, 362, 369, 374, 395
MaeII ACGT 1 cut(s) 147
MalI GATC 2 cut(s) 210, 247
MboI GATC 2 cut(s) 208, 245
MboII GAAGA 9 cut(s) 144, 147, 189, 218, 255, 326, 362, 473, 685
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 1 cut(s) 208
MluCI AATT 2 cut(s) 105, 438
MlyI GAGTC 1 cut(s) 743
MseI TTAA 1 cut(s) 626
MslI CAYNNNNRTG 1 cut(s) 270
MspA1I CMGCKG 1 cut(s) 185
MspI CCGG 1 cut(s) 454
MspR9I CCNGG 3 cut(s) 270, 288, 454
MunI CAATTG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 648
MvaI CCWGG 2 cut(s) 270, 288
NciI CCSGG 1 cut(s) 454
NcoI CCATGG 1 cut(s) 345
NdeII GATC 2 cut(s) 208, 245
NlaIII CATG 3 cut(s) 137, 349, 765
NspV TTCGAA 1 cut(s) 603
PciSI GCTCTTC 1 cut(s) 172
PctI GAATGC 1 cut(s) 648
PfeI GAWTC 3 cut(s) 320, 365, 605
PfoI TCCNGGA 1 cut(s) 452
PkrI GCNGC 2 cut(s) 184, 664
PleI GAGTC 1 cut(s) 743
PpsI GAGTC 1 cut(s) 743
Psp6I CCWGG 2 cut(s) 268, 286
PspGI CCWGG 2 cut(s) 268, 286
PsuI RGATCY 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 185
RseI CAYNNNNRTG 1 cut(s) 270
SapI GCTCTTC 1 cut(s) 172
SaqAI TTAA 1 cut(s) 626
SatI GCNGC 2 cut(s) 183, 663
Sau3AI GATC 2 cut(s) 208, 245
SchI GAGTC 1 cut(s) 743
ScrFI CCNGG 3 cut(s) 270, 288, 454
SetI ASST 7 cut(s) 81, 150, 187, 225, 274, 292, 664
SfaNI GCATC 1 cut(s) 487
SfuI TTCGAA 1 cut(s) 603
SmiMI CAYNNNNRTG 1 cut(s) 270
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 2 cut(s) 105, 438
SspI AATATT 1 cut(s) 127
SspMI CTAG 5 cut(s) 240, 362, 369, 374, 395
StyD4I CCNGG 3 cut(s) 268, 286, 452
StyI CCWWGG 1 cut(s) 345
TaaI ACNGT 1 cut(s) 427
TaiI ACGT 1 cut(s) 150
TaqI TCGA 1 cut(s) 603
TasI AATT 2 cut(s) 105, 438
TfiI GAWTC 3 cut(s) 320, 365, 605
Tru1I TTAA 1 cut(s) 626
Tru9I TTAA 1 cut(s) 626
TscAI CASTG 1 cut(s) 339
TseI GCWGC 2 cut(s) 182, 662
TspDTI ATGAA 3 cut(s) 266, 327, 333
TspRI CASTG 1 cut(s) 339
XspI CTAG 5 cut(s) 240, 362, 369, 374, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.