Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0004237

Physical Location & Seq

Genomic Coordinates Forward (+)

23998934 .. 24003176

Gene Structure 4243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1160300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1425 bp

ATGGTGCCATCCAGAAGTCGTAGTGGTCATGGCAATCAAGAGACTGCTAAGAAAGCTTATCTTCCAATGGGGGACCAGCTGCAAAAATGGAAATCACCTTTTGGCCTCTATGCTGATTCTGATATGTTGGTGTGGTTGAAAGGACTTGCATTGGACCCTTGTGACCGTATTGCATCTCATGGTTCATCTCGACAACTATGGAATCAGAGTCTTAAAGTGCGGAAATTCTTGCTTCTTGGTAATGCCGAATCTCCTCAGAAAAAGCGAAAACTTGATCAGTTCCTAAAAGGTAGTAAGTTCGCCGAAGTTTCTCAATTGGATACAGAAAAGTCTGATGTCCATAGTGTTAAAAGAATGAGTACAGGGCATTCTGTCTCGTCATGCTTAACCAATACAAATGCCAACCATGAAATTTCCAAACCTCAGCTTGTCTCTAACTCGCACGGTTCTGGAAGTTTGTTGACATTTGAAAATGAATATCAAGGGAAGCCATATTCTACAAATTTGAGCATTAGGGACATCGAAAATTCTGGTCCATATTGCAAGGATGATTCCACCTCTCCTATATTTGATACAGATGAATCGAACAATGGTTTGAACAAATTTAAAAACATGAACTTATGTGATGAAACTATTGAGAATGTTAACGATACAGCTGACAGCTCAGACTCTCCGAGTTTAGACGTGAATAGTACAGCATTTGAACGCGCATTGAGGTTTATGATTTTTAGTGATGATTATCTTCCAAGGTCTATTCCTGTGAGAGATATGAATGGTTCATCTCACCACTCAGATTCATCCAGATCAATAGAGCAAAATCTGAAACTTAGAGAAGCAGTGAGATTACTATTTACAGATGGTAGTCTTCCGAGGTCTGTTGTTCCGATTGGTCCTTGTTTTCAGGCAGACGTCCCAGTATGGACAGGTCCAATAAACAGAAAAACTACTCATGGTGGTGATGGTGATTCAGCAGCGTCAAAGTGGTTGGGCACGCGAACGTGGCCCGTTAAAGGAAAAAGTGCCGGAACCACTGTGAAAGCACTTGGGAAAGGGAGATCCAACTCTTGTTCTTGCATTTCTCCAGGATCTGTAGGTTGTGTTAAACACCACATTCATGAAGAAAGACTCCTCTTGCAATTTGAACTTGGTCCTGCCTTCCGGAGTTGGAAGTTTGGCGAAATGGGAGAATTTGTCTCAAAGTCATGGACATCAACTGAACAGCGGACCTTTGAATCTCTTGTGAAAGTGAAGCCACTATCAAATGAAGCAAGTTTTTGGAAGATTGCCTATAACCGTTTCCCTTCCAAGTCCCGGAAGAGTATTTTGAATTACTACTACAATGTGTACATCCCTAGACGTATGAGCCTCCAGACCAGATCCTTCCTCGATAAAATTGACAGCGATGATGATGAGACGGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELM2

Protein Analysis

475

Amino Acids

53.02

Weight (kDa)

8.72

Isoelectric Point (pI)

48.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004237)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12001 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700
malus_domestica	MD04G1147000.v1.1 MD12G1160300.v1.1
prunus_persica	Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1
pyrus_communis	pycom04g13280 pycom12g15210
rosa_chinensis	RchiOBHm_Chr3g0463841 RchiOBHm_Chr3g0470651
rosa_laevigata	RLG00000024250 RLG00000024752
rosa_multiflora	Rmu_co8471153.1_g000001 Rmu_sc0004796.1_g000007
rosa_roxburghii	Rroxscaffold_6G00410630
rosa_rugosa	Rorug03G0068200 Rorug03G0068300 Rorug03G0111300 Rorug03G0111400
rosa_samantha	Rh3AG125500 Rh3AG161000 Rh3BG129600 Rh3BG185600 Rh3CG132100 Rh3CG175900 Rh3DG189200
rosa_wichuraiana	Rw3G010590 Rw3G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	912
AccB1I	GGYRCC	1 cut(s)	4
AccII	CGCG	2 cut(s)	708, 994
AccIII	TCCGGA	1 cut(s)	1158
AciI	CCGC	2 cut(s)	220, 1222
AclWI	GGATC	3 cut(s)	1050, 1093, 1371
AcsI	RAATTY	6 cut(s)	224, 411, 502, 526, 602, 1187
AcyI	GRCGYC	1 cut(s)	909
AfaI	GTAC	3 cut(s)	361, 694, 1346
AfiI	CCNNNNNNNGG	2 cut(s)	1010, 1311
AgsI	TTSAA	7 cut(s)	139, 470, 598, 704, 1142, 1232, 1327
AjiI	CACGTC	1 cut(s)	685
AjnI	CCWGG	1 cut(s)	1081
AluBI	AGCT	5 cut(s)	56, 79, 427, 656, 663
AluI	AGCT	5 cut(s)	56, 79, 427, 656, 663
Alw26I	GTCTC	5 cut(s)	35, 379, 436, 1198, 1406
AlwI	GGATC	3 cut(s)	1050, 1093, 1371
AlwNI	CAGNNNCTG	1 cut(s)	1088
Aor13HI	TCCGGA	1 cut(s)	1158
AoxI	GGCC	2 cut(s)	103, 1001
ApeKI	GCWGC	2 cut(s)	79, 971
ApoI	RAATTY	6 cut(s)	224, 411, 502, 526, 602, 1187
AspLEI	GCGC	1 cut(s)	710
AspS9I	GGNCC	8 cut(s)	73, 154, 533, 890, 926, 1002, 1148, 1224
AsuC2I	CCSGG	1 cut(s)	1312
AsuHPI	GGTGA	4 cut(s)	87, 776, 968, 974
AvaII	GGWCC	7 cut(s)	73, 154, 533, 890, 926, 1148, 1224
BaeGI	GKGCMC	1 cut(s)	992
BanI	GGYRCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	857
BbvCI	CCTCAGC	1 cut(s)	423
BbvI	GCAGC	2 cut(s)	66, 983
BccI	CCATC	3 cut(s)	16, 851, 953
BciT130I	CCWGG	1 cut(s)	1083
BciVI	GTATCC	1 cut(s)	313
BclI	TGATCA	1 cut(s)	274
BcnI	CCSGG	1 cut(s)	1312
BcoDI	GTCTC	5 cut(s)	35, 379, 436, 1198, 1406
BfaI	CTAG	1 cut(s)	1353
BfmI	CTRYAG	1 cut(s)	1089
BfuI	GTATCC	1 cut(s)	313
BisI	GCNGC	2 cut(s)	80, 972
BlsI	GCNGC	2 cut(s)	81, 973
Bme1390I	CCNGG	2 cut(s)	1083, 1312
Bme18I	GGWCC	7 cut(s)	73, 154, 533, 890, 926, 1148, 1224
BmgBI	CACGTC	1 cut(s)	685
BmgT120I	GGNCC	8 cut(s)	73, 154, 533, 890, 926, 1002, 1148, 1224
BmiI	GGNNCC	4 cut(s)	6, 74, 156, 1027
BmrFI	CCNGG	2 cut(s)	1083, 1312
BmrI	ACTGGG	1 cut(s)	908
BmsI	GCATC	1 cut(s)	182
BmuI	ACTGGG	1 cut(s)	908
BpiI	GAAGAC	1 cut(s)	857
BpmI	CTGGAG	2 cut(s)	1065, 1352
Bpu10I	CCTNAGC	1 cut(s)	423
BpuMI	CCSGG	1 cut(s)	1312
BsaBI	GATNNNNATC	1 cut(s)	738
BsaHI	GRCGYC	1 cut(s)	909
BsaJI	CCNNGG	2 cut(s)	746, 869
BsaWI	WCCGGW	1 cut(s)	1158
BsaXI	ACNNNNNCTCC	2 cut(s)	1176, 1206
Bsc4I	CCNNNNNNNGG	2 cut(s)	1010, 1311
Bse1I	ACTGG	1 cut(s)	914
Bse8I	GATNNNNATC	1 cut(s)	738
BseAI	TCCGGA	1 cut(s)	1158
BseBI	CCWGG	1 cut(s)	1083
BseDI	CCNNGG	2 cut(s)	746, 869
BseGI	GGATG	4 cut(s)	8, 553, 797, 1347
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	2 cut(s)	1010, 1311
BseMII	CTCAG	4 cut(s)	269, 437, 678, 804
BseNI	ACTGG	1 cut(s)	914
BseRI	GAGGAG	2 cut(s)	243, 1118
BseSI	GKGCMC	1 cut(s)	992
BseXI	GCAGC	2 cut(s)	66, 983
Bsh1236I	CGCG	2 cut(s)	708, 994
BshFI	GGCC	2 cut(s)	105, 1003
BshNI	GGYRCC	1 cut(s)	4
BsiSI	CCGG	3 cut(s)	1023, 1159, 1312
BslFI	GGGAC	4 cut(s)	86, 530, 896, 1294
BslI	CCNNNNNNNGG	2 cut(s)	1010, 1311
BsmAI	GTCTC	5 cut(s)	35, 379, 436, 1198, 1406
BsmBI	CGTCTC	1 cut(s)	1406
BsmFI	GGGAC	4 cut(s)	86, 530, 896, 1294
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	105, 1003
Bsp1286I	GDGCHC	1 cut(s)	992
Bsp13I	TCCGGA	1 cut(s)	1158
Bsp1407I	TGTACA	1 cut(s)	1344
Bsp143I	GATC	5 cut(s)	274, 803, 1055, 1085, 1376
BspACI	CCGC	2 cut(s)	220, 1222
BspANI	GGCC	2 cut(s)	105, 1003
BspCNI	CTCAG	4 cut(s)	268, 436, 677, 803
BspEI	TCCGGA	1 cut(s)	1158
BspFNI	CGCG	2 cut(s)	708, 994
BspHI	TCATGA	1 cut(s)	1114
BspLI	GGNNCC	4 cut(s)	6, 74, 156, 1027
BspPI	GGATC	3 cut(s)	1050, 1093, 1371
BspT107I	GGYRCC	1 cut(s)	4
BsrGI	TGTACA	1 cut(s)	1344
BsrI	ACTGG	1 cut(s)	914
BssECI	CCNNGG	2 cut(s)	746, 869
BssMI	GATC	5 cut(s)	274, 803, 1055, 1085, 1376
BssNI	GRCGYC	1 cut(s)	909
BssT1I	CCWWGG	1 cut(s)	746
Bst2UI	CCWGG	1 cut(s)	1083
Bst4CI	ACNGT	4 cut(s)	167, 446, 1033, 1295
Bst6I	CTCTTC	2 cut(s)	1310, 1413
BstACI	GRCGYC	1 cut(s)	909
BstAUI	TGTACA	1 cut(s)	1344
BstC8I	GCNNGC	1 cut(s)	992
BstDEI	CTNAG	6 cut(s)	48, 255, 423, 664, 790, 827
BstF5I	GGATG	4 cut(s)	8, 553, 797, 1347
BstFNI	CGCG	2 cut(s)	708, 994
BstHHI	GCGC	1 cut(s)	710
BstKTI	GATC	5 cut(s)	277, 806, 1058, 1088, 1379
BstMAI	GTCTC	5 cut(s)	35, 379, 436, 1198, 1406
BstMBI	GATC	5 cut(s)	274, 803, 1055, 1085, 1376
BstMWI	GCNNNNNNNGC	2 cut(s)	53, 1000
BstNI	CCWGG	1 cut(s)	1083
BstSCI	CCNGG	2 cut(s)	1081, 1310
BstSFI	CTRYAG	1 cut(s)	1089
BstSLI	GKGCMC	1 cut(s)	992
BstUI	CGCG	2 cut(s)	708, 994
BstV1I	GCAGC	2 cut(s)	66, 983
BstV2I	GAAGAC	1 cut(s)	857
BstX2I	RGATCY	3 cut(s)	1055, 1085, 1376
BstYI	RGATCY	3 cut(s)	1055, 1085, 1376
BsuI	GTATCC	1 cut(s)	313
BsuRI	GGCC	2 cut(s)	105, 1003
BtgZI	GCGATG	1 cut(s)	1416
BtrI	CACGTC	1 cut(s)	685
BtsCI	GGATG	4 cut(s)	8, 553, 797, 1347
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	2 cut(s)	843, 1029
Cac8I	GCNNGC	1 cut(s)	992
CaiI	CAGNNNCTG	1 cut(s)	1088
CciI	TCATGA	1 cut(s)	1114
CfoI	GCGC	1 cut(s)	710
Cfr13I	GGNCC	8 cut(s)	73, 154, 533, 890, 926, 1002, 1148, 1224
CseI	GACGC	1 cut(s)	963
Csp6I	GTAC	3 cut(s)	360, 693, 1345
CviAII	CATG	8 cut(s)	29, 179, 381, 407, 613, 950, 1115, 1203
CviQI	GTAC	3 cut(s)	360, 693, 1345
DdeI	CTNAG	6 cut(s)	48, 255, 423, 664, 790, 827
DpnI	GATC	5 cut(s)	276, 805, 1057, 1087, 1378
DpnII	GATC	5 cut(s)	274, 803, 1055, 1085, 1376
DraI	TTTAAA	1 cut(s)	607
Eam1104I	CTCTTC	2 cut(s)	1310, 1413
EarI	CTCTTC	2 cut(s)	1310, 1413
Eco130I	CCWWGG	1 cut(s)	746
Eco47I	GGWCC	7 cut(s)	73, 154, 533, 890, 926, 1148, 1224
EcoRII	CCWGG	1 cut(s)	1081
EcoT14I	CCWWGG	1 cut(s)	746
ErhI	CCWWGG	1 cut(s)	746
Esp3I	CGTCTC	1 cut(s)	1406
FaeI	CATG	8 cut(s)	32, 182, 384, 410, 616, 953, 1118, 1206
FalI	AAGNNNNNCTT	2 cut(s)	45, 77
FaqI	GGGAC	4 cut(s)	86, 530, 896, 1294
FatI	CATG	8 cut(s)	28, 178, 380, 406, 612, 949, 1114, 1202
FbaI	TGATCA	1 cut(s)	274
Fnu4HI	GCNGC	2 cut(s)	80, 972
FokI	GGATG	3 cut(s)	560, 784, 1334
Fsp4HI	GCNGC	2 cut(s)	80, 972
FspBI	CTAG	1 cut(s)	1353
GlaI	GCGC	1 cut(s)	709
GluI	GCNGC	2 cut(s)	80, 972
GsuI	CTGGAG	2 cut(s)	1065, 1352
HaeIII	GGCC	2 cut(s)	105, 1003
HapII	CCGG	3 cut(s)	1023, 1159, 1312
HgaI	GACGC	1 cut(s)	963
HhaI	GCGC	1 cut(s)	710
Hin1I	GRCGYC	1 cut(s)	909
Hin1II	CATG	8 cut(s)	32, 182, 384, 410, 616, 953, 1118, 1206
Hin6I	GCGC	1 cut(s)	708
HinP1I	GCGC	1 cut(s)	708
HincII	GTYRAC	2 cut(s)	462, 646
HindII	GTYRAC	2 cut(s)	462, 646
HindIII	AAGCTT	1 cut(s)	54
HpaI	GTTAAC	1 cut(s)	646
HpaII	CCGG	3 cut(s)	1023, 1159, 1312
HphI	GGTGA	4 cut(s)	87, 776, 968, 974
Hpy166II	GTNNAC	3 cut(s)	462, 646, 1345
Hpy188III	TCNNGA	8 cut(s)	12, 38, 189, 450, 801, 1115, 1159, 1369
Hpy8I	GTNNAC	3 cut(s)	462, 646, 1345
HpyAV	CCTTC	3 cut(s)	1165, 1311, 1390
HpyCH4III	ACNGT	4 cut(s)	167, 446, 1033, 1295
HpyCH4IV	ACGT	4 cut(s)	684, 909, 998, 1357
HpyCH4V	TGCA	6 cut(s)	82, 149, 173, 543, 1074, 1135
HpyF10VI	GCNNNNNNNGC	2 cut(s)	53, 1000
HpyF3I	CTNAG	6 cut(s)	48, 255, 423, 664, 790, 827
HpySE526I	ACGT	4 cut(s)	684, 909, 998, 1357
Hsp92I	GRCGYC	1 cut(s)	909
Hsp92II	CATG	8 cut(s)	32, 182, 384, 410, 616, 953, 1118, 1206
HspAI	GCGC	1 cut(s)	708
Kpn2I	TCCGGA	1 cut(s)	1158
Ksp22I	TGATCA	1 cut(s)	274
KspAI	GTTAAC	1 cut(s)	646
Kzo9I	GATC	5 cut(s)	274, 803, 1055, 1085, 1376
Lsp1109I	GCAGC	2 cut(s)	66, 983
LweI	GCATC	1 cut(s)	182
MaeI	CTAG	1 cut(s)	1353
MaeII	ACGT	4 cut(s)	684, 909, 998, 1357
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	5 cut(s)	276, 805, 1057, 1087, 1378
MboI	GATC	5 cut(s)	274, 803, 1055, 1085, 1376
MboII	GAAGA	6 cut(s)	53, 734, 857, 1130, 1291, 1327
MfeI	CAATTG	1 cut(s)	314
MflI	RGATCY	3 cut(s)	1055, 1085, 1376
MhlI	GDGCHC	1 cut(s)	992
MlyI	GAGTC	3 cut(s)	217, 662, 1119
MmeI	TCCRAC	2 cut(s)	1083, 1145
MnlI	CCTC	9 cut(s)	116, 264, 432, 568, 708, 864, 1139, 1376, 1394
MroI	TCCGGA	1 cut(s)	1158
MseI	TTAA	7 cut(s)	213, 348, 386, 606, 645, 1008, 1101
MslI	CAYNNNNRTG	2 cut(s)	954, 1113
MspA1I	CMGCKG	3 cut(s)	79, 656, 1222
MspI	CCGG	3 cut(s)	1023, 1159, 1312
MspR9I	CCNGG	2 cut(s)	1083, 1312
MunI	CAATTG	1 cut(s)	314
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	1 cut(s)	1083
MvnI	CGCG	2 cut(s)	708, 994
MwoI	GCNNNNNNNGC	2 cut(s)	53, 1000
NciI	CCSGG	1 cut(s)	1312
NdeII	GATC	5 cut(s)	274, 803, 1055, 1085, 1376
NlaIII	CATG	8 cut(s)	32, 182, 384, 410, 616, 953, 1118, 1206
NlaIV	GGNNCC	4 cut(s)	6, 74, 156, 1027
NmuCI	GTSAC	1 cut(s)	161
PagI	TCATGA	1 cut(s)	1114
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	8 cut(s)	116, 202, 248, 551, 581, 794, 965, 1232
PfoI	TCCNGGA	2 cut(s)	1081, 1310
PkrI	GCNGC	2 cut(s)	81, 973
PleI	GAGTC	3 cut(s)	216, 662, 1119
PpsI	GAGTC	3 cut(s)	216, 662, 1119
Psp6I	CCWGG	1 cut(s)	1081
PspGI	CCWGG	1 cut(s)	1081
PspN4I	GGNNCC	4 cut(s)	6, 74, 156, 1027
PspPI	GGNCC	8 cut(s)	73, 154, 533, 890, 926, 1002, 1148, 1224
PstNI	CAGNNNCTG	1 cut(s)	1088
PsuI	RGATCY	3 cut(s)	1055, 1085, 1376
PvuII	CAGCTG	2 cut(s)	79, 656
RsaI	GTAC	3 cut(s)	361, 694, 1346
RsaNI	GTAC	3 cut(s)	360, 693, 1345
RseI	CAYNNNNRTG	2 cut(s)	954, 1113
SaqAI	TTAA	7 cut(s)	213, 348, 386, 606, 645, 1008, 1101
SatI	GCNGC	2 cut(s)	80, 972
Sau3AI	GATC	5 cut(s)	274, 803, 1055, 1085, 1376
Sau96I	GGNCC	8 cut(s)	73, 154, 533, 890, 926, 1002, 1148, 1224
SchI	GAGTC	3 cut(s)	217, 662, 1119
ScrFI	CCNGG	2 cut(s)	1083, 1312
SduI	GDGCHC	1 cut(s)	992
SfaNI	GCATC	1 cut(s)	182
SfcI	CTRYAG	1 cut(s)	1089
SinI	GGWCC	7 cut(s)	73, 154, 533, 890, 926, 1148, 1224
SmiMI	CAYNNNNRTG	2 cut(s)	954, 1113
SsiI	CCGC	2 cut(s)	220, 1222
SspMI	CTAG	1 cut(s)	1353
StyD4I	CCNGG	2 cut(s)	1081, 1310
StyI	CCWWGG	1 cut(s)	746
TaaI	ACNGT	4 cut(s)	167, 446, 1033, 1295
TaiI	ACGT	4 cut(s)	687, 912, 1001, 1360
TaqI	TCGA	4 cut(s)	190, 522, 584, 1386
TatI	WGTACW	3 cut(s)	359, 692, 1344
TfiI	GAWTC	8 cut(s)	116, 202, 248, 551, 581, 794, 965, 1232
Tru1I	TTAA	7 cut(s)	213, 348, 386, 606, 645, 1008, 1101
Tru9I	TTAA	7 cut(s)	213, 348, 386, 606, 645, 1008, 1101
TscAI	CASTG	2 cut(s)	843, 1036
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	2 cut(s)	79, 971
Tsp45I	GTSAC	1 cut(s)	161
TspRI	CASTG	2 cut(s)	843, 1036
VpaK11BI	GGWCC	7 cut(s)	73, 154, 533, 890, 926, 1148, 1224
XapI	RAATTY	6 cut(s)	224, 411, 502, 526, 602, 1187
XspI	CTAG	1 cut(s)	1353
ZraI	GACGTC	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.