pycom12g15210

AT-rich interactive domain-containing protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
17557397 .. 17559506
2110 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g15210.1

Sequence Viewer

Length: 1431 bp
ATGGCGCCATCCGGAAGTCGTAGTGGTCATGGCAATCAAGAGACTGCTAAGAAAGCTTATTTTCCAATGGGGGACCAGCTGCAAAAATGGAAATCACCTTTTGGCCTCTATGCTGATTCTGACATGTTGGTGTGGTTGAAAGGACTTGCATTGGACCCTTGTGACCGTAATGCATCTCCTGGTTCATCTCGACAACTATGGAATCAGAGTCTTAAAGTGCGGAAATTCTTGCTTCTTGGTAATGCCGAATCTCCTCGGAAAAAGCGAAAACTTGATCAGTTCCTAAAAGGTAGTAAGTTCGCCGAAGTTTCTCGATTGGATACAGGAAAATCTGATGTCCGTAGTGTTAAAAGAATGAGTACAGGGCATTCTGTCTCGTCATGCTTAACCAATACAAATGCCAACCATGAAATTTCCAAACCTCGGCTTGTCTCTAACTCGCACGGTTCTGGAAGTTTGTTGACATTTGAAAATGAATATCAAGGGAAGCCATATTCTACAAATTTGACCATTAGGGACTTGGAAAATTCTGGTCCATCTTGTAAGGATAATTCCGCCTCTCCTATATTTGATACAGATGAATCAAACAATGGTTTGAACAAATTTAATCTGGAAAACATGAACTTATGCGATGAAACTATTGAGAATGTTAATGATACAGCTGACAGCTCAGACTCTCCGAGTTTAGACGAGAAGAGTACAGAATTTGAACGCGCATTGAGGTTTATGATTTTTAGTGATGATTATCTTCCAAGGTCTATTCCTGTGAGAGATATCAACGGTTCATCTCACCACTCAGATTCATCCAGATCAATAGAGCAAAATCTGAAACTTAGAGAAGCAGTGAGATTACTATTTACAGATGGTAGTCTTCCGAGATCTGTTGTTCCGATTGGTCCTTGTTTTCAGGCGGACGTCCCAGTATGGACAGGTCCAATAAACAGTAAAACTCCTTATGGTGGTGATGGTGATTCAGCAGCGTCAAAGTGGTTGGGCACGCGAACGTGGCCCATTAAAGGAAAAAGTGCCGGAACCACTGTGAAAGCACTTGGGAAAGGGAGATCCAACTCTTGTTCTTGCATTTCTCCAGGATCTGTTGGTTGTGTTAAACACCACATTCATGAAGAAAGACTACTCTTGCAATTCGAACTTGGTCCTGCCTTCCGGAGTTGGAAGTTTGGCGAAATGGGAGAATTTGTTTCAAAGTCATGGACGTCAACTGAACAGCGGACCTTTGAATCTCTTGTGAAAGTGAAGCCACTATCAAATGAAGCAAGTTTTTGGAAGATTGCCTATAAGCGTTTCCCTTCCAAGTCCCGGAAGAGTATTTTGAATTACTACTACAATGTGTACATCCCTAGGCGTATGAGCCTCCAGACCAGATCCTCCCTCGATAAAATTGACAGCGATGATGATGAGACGGAAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

477

Amino Acids

53.06

Weight (kDa)

8.9

Isoelectric Point (pI)

48.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 918, 1217
AccB1I GGYRCC 1 cut(s) 4
AccII CGCG 2 cut(s) 714, 1000
AccIII TCCGGA 2 cut(s) 11, 1164
AciI CCGC 4 cut(s) 220, 555, 911, 1228
AclWI GGATC 3 cut(s) 1056, 1099, 1377
AcsI RAATTY 7 cut(s) 224, 411, 502, 526, 602, 704, 1193
AcyI GRCGYC 3 cut(s) 5, 915, 1214
AfaI GTAC 3 cut(s) 361, 700, 1352
AfiI CCNNNNNNNGG 4 cut(s) 423, 959, 1016, 1317
AflIII ACRYGT 1 cut(s) 123
AgsI TTSAA 7 cut(s) 139, 470, 598, 710, 1203, 1238, 1333
AjnI CCWGG 2 cut(s) 178, 1087
AluBI AGCT 4 cut(s) 56, 79, 662, 669
AluI AGCT 4 cut(s) 56, 79, 662, 669
Alw26I GTCTC 4 cut(s) 35, 379, 436, 1412
AlwI GGATC 3 cut(s) 1056, 1099, 1377
AlwNI CAGNNNCTG 1 cut(s) 1094
Aor13HI TCCGGA 2 cut(s) 11, 1164
AoxI GGCC 2 cut(s) 103, 1007
ApeKI GCWGC 2 cut(s) 79, 977
ApoI RAATTY 7 cut(s) 224, 411, 502, 526, 602, 704, 1193
AspA2I CCTAGG 1 cut(s) 1358
AspLEI GCGC 2 cut(s) 7, 716
AspS9I GGNCC 8 cut(s) 73, 154, 533, 896, 932, 1008, 1154, 1230
AsuC2I CCSGG 1 cut(s) 1318
AsuHPI GGTGA 4 cut(s) 87, 782, 974, 980
AsuII TTCGAA 1 cut(s) 1146
AvaII GGWCC 7 cut(s) 73, 154, 533, 896, 932, 1154, 1230
AvrII CCTAGG 1 cut(s) 1358
BaeGI GKGCMC 1 cut(s) 998
BanI GGYRCC 1 cut(s) 4
BarI GAAGNNNNNNTAC 2 cut(s) 1116, 1148
BbsI GAAGAC 1 cut(s) 863
BbvI GCAGC 2 cut(s) 66, 989
BccI CCATC 4 cut(s) 16, 544, 857, 959
BciT130I CCWGG 2 cut(s) 180, 1089
BciVI GTATCC 1 cut(s) 313
BclI TGATCA 1 cut(s) 274
BcnI CCSGG 1 cut(s) 1318
BcoDI GTCTC 4 cut(s) 35, 379, 436, 1412
BfaI CTAG 1 cut(s) 1359
BfoI RGCGCY 1 cut(s) 8
BfuI GTATCC 1 cut(s) 313
BglII AGATCT 1 cut(s) 878
BisI GCNGC 2 cut(s) 80, 978
BlnI CCTAGG 1 cut(s) 1358
BlsI GCNGC 2 cut(s) 81, 979
Bme1390I CCNGG 3 cut(s) 180, 1089, 1318
Bme18I GGWCC 7 cut(s) 73, 154, 533, 896, 932, 1154, 1230
BmgT120I GGNCC 8 cut(s) 73, 154, 533, 896, 932, 1008, 1154, 1230
BmiI GGNNCC 4 cut(s) 6, 74, 156, 1033
BmrFI CCNGG 3 cut(s) 180, 1089, 1318
BmrI ACTGGG 1 cut(s) 914
BmsI GCATC 1 cut(s) 182
BmuI ACTGGG 1 cut(s) 914
BpiI GAAGAC 1 cut(s) 863
BpmI CTGGAG 2 cut(s) 1071, 1358
Bpu14I TTCGAA 1 cut(s) 1146
BpuMI CCSGG 1 cut(s) 1318
BsaBI GATNNNNATC 1 cut(s) 744
BsaHI GRCGYC 3 cut(s) 5, 915, 1214
BsaJI CCNNGG 4 cut(s) 254, 422, 752, 1358
BsaWI WCCGGW 2 cut(s) 11, 1164
BsaXI ACNNNNNCTCC 2 cut(s) 1182, 1212
Bsc4I CCNNNNNNNGG 4 cut(s) 423, 959, 1016, 1317
Bse1I ACTGG 1 cut(s) 920
Bse8I GATNNNNATC 1 cut(s) 744
BseAI TCCGGA 2 cut(s) 11, 1164
BseBI CCWGG 2 cut(s) 180, 1089
BseDI CCNNGG 4 cut(s) 254, 422, 752, 1358
BseGI GGATG 3 cut(s) 8, 803, 1353
BseJI GATNNNNATC 1 cut(s) 744
BseLI CCNNNNNNNGG 4 cut(s) 423, 959, 1016, 1317
BseMII CTCAG 2 cut(s) 684, 810
BseNI ACTGG 1 cut(s) 920
BseRI GAGGAG 1 cut(s) 243
BseSI GKGCMC 1 cut(s) 998
BseXI GCAGC 2 cut(s) 66, 989
Bsh1236I CGCG 2 cut(s) 714, 1000
BshFI GGCC 2 cut(s) 105, 1009
BshNI GGYRCC 1 cut(s) 4
BsiSI CCGG 4 cut(s) 12, 1029, 1165, 1318
BslFI GGGAC 4 cut(s) 86, 530, 902, 1300
BslI CCNNNNNNNGG 4 cut(s) 423, 959, 1016, 1317
BsmAI GTCTC 4 cut(s) 35, 379, 436, 1412
BsmBI CGTCTC 1 cut(s) 1412
BsmFI GGGAC 4 cut(s) 86, 530, 902, 1300
BsmI GAATGC 1 cut(s) 367
BsnI GGCC 2 cut(s) 105, 1009
Bsp119I TTCGAA 1 cut(s) 1146
Bsp1286I GDGCHC 1 cut(s) 998
Bsp13I TCCGGA 2 cut(s) 11, 1164
Bsp1407I TGTACA 1 cut(s) 1350
Bsp143I GATC 6 cut(s) 274, 809, 878, 1061, 1091, 1382
BspACI CCGC 4 cut(s) 220, 555, 911, 1228
BspANI GGCC 2 cut(s) 105, 1009
BspCNI CTCAG 2 cut(s) 683, 809
BspEI TCCGGA 2 cut(s) 11, 1164
BspFNI CGCG 2 cut(s) 714, 1000
BspHI TCATGA 1 cut(s) 1120
BspLI GGNNCC 4 cut(s) 6, 74, 156, 1033
BspPI GGATC 3 cut(s) 1056, 1099, 1377
BspT104I TTCGAA 1 cut(s) 1146
BspT107I GGYRCC 1 cut(s) 4
BsrGI TGTACA 1 cut(s) 1350
BsrI ACTGG 1 cut(s) 920
BssECI CCNNGG 4 cut(s) 254, 422, 752, 1358
BssMI GATC 6 cut(s) 274, 809, 878, 1061, 1091, 1382
BssNI GRCGYC 3 cut(s) 5, 915, 1214
BssT1I CCWWGG 2 cut(s) 752, 1358
Bst2UI CCWGG 2 cut(s) 180, 1089
Bst4CI ACNGT 5 cut(s) 167, 446, 782, 944, 1039
Bst6I CTCTTC 3 cut(s) 689, 1316, 1419
BstACI GRCGYC 3 cut(s) 5, 915, 1214
BstAUI TGTACA 1 cut(s) 1350
BstBI TTCGAA 1 cut(s) 1146
BstC8I GCNNGC 1 cut(s) 998
BstDEI CTNAG 4 cut(s) 48, 670, 796, 833
BstF5I GGATG 3 cut(s) 8, 803, 1353
BstFNI CGCG 2 cut(s) 714, 1000
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 2 cut(s) 7, 716
BstKTI GATC 6 cut(s) 277, 812, 881, 1064, 1094, 1385
BstMAI GTCTC 4 cut(s) 35, 379, 436, 1412
BstMBI GATC 6 cut(s) 274, 809, 878, 1061, 1091, 1382
BstMWI GCNNNNNNNGC 2 cut(s) 53, 1006
BstNI CCWGG 2 cut(s) 180, 1089
BstNSI RCATGY 1 cut(s) 127
BstSCI CCNGG 3 cut(s) 178, 1087, 1316
BstSLI GKGCMC 1 cut(s) 998
BstUI CGCG 2 cut(s) 714, 1000
BstV1I GCAGC 2 cut(s) 66, 989
BstV2I GAAGAC 1 cut(s) 863
BstX2I RGATCY 4 cut(s) 878, 1061, 1091, 1382
BstYI RGATCY 4 cut(s) 878, 1061, 1091, 1382
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 2 cut(s) 105, 1009
BtgZI GCGATG 2 cut(s) 645, 1422
BtsCI GGATG 3 cut(s) 8, 803, 1353
BtsI GCAGTG 1 cut(s) 849
BtsIMutI CAGTG 2 cut(s) 849, 1035
Cac8I GCNNGC 1 cut(s) 998
CaiI CAGNNNCTG 1 cut(s) 1094
CciI TCATGA 1 cut(s) 1120
CfoI GCGC 2 cut(s) 7, 716
Cfr13I GGNCC 8 cut(s) 73, 154, 533, 896, 932, 1008, 1154, 1230
CseI GACGC 1 cut(s) 969
Csp6I GTAC 3 cut(s) 360, 699, 1351
CviAII CATG 7 cut(s) 29, 124, 381, 407, 619, 1121, 1209
CviQI GTAC 3 cut(s) 360, 699, 1351
DdeI CTNAG 4 cut(s) 48, 670, 796, 833
DinI GGCGCC 1 cut(s) 6
DpnI GATC 6 cut(s) 276, 811, 880, 1063, 1093, 1384
DpnII GATC 6 cut(s) 274, 809, 878, 1061, 1091, 1382
Eam1104I CTCTTC 3 cut(s) 689, 1316, 1419
EarI CTCTTC 3 cut(s) 689, 1316, 1419
EciI GGCGGA 2 cut(s) 544, 926
Eco130I CCWWGG 2 cut(s) 752, 1358
Eco32I GATATC 1 cut(s) 775
Eco47I GGWCC 7 cut(s) 73, 154, 533, 896, 932, 1154, 1230
EcoRII CCWGG 2 cut(s) 178, 1087
EcoRV GATATC 1 cut(s) 775
EcoT14I CCWWGG 2 cut(s) 752, 1358
EcoT22I ATGCAT 1 cut(s) 175
EgeI GGCGCC 1 cut(s) 6
EheI GGCGCC 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 752, 1358
Esp3I CGTCTC 1 cut(s) 1412
FaeI CATG 7 cut(s) 32, 127, 384, 410, 622, 1124, 1212
FaqI GGGAC 4 cut(s) 86, 530, 902, 1300
FatI CATG 7 cut(s) 28, 123, 380, 406, 618, 1120, 1208
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 80, 978
FokI GGATG 2 cut(s) 790, 1340
Fsp4HI GCNGC 2 cut(s) 80, 978
FspBI CTAG 1 cut(s) 1359
GlaI GCGC 2 cut(s) 6, 715
GluI GCNGC 2 cut(s) 80, 978
GsuI CTGGAG 2 cut(s) 1071, 1358
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 2 cut(s) 105, 1009
HapII CCGG 4 cut(s) 12, 1029, 1165, 1318
HgaI GACGC 1 cut(s) 969
HhaI GCGC 2 cut(s) 7, 716
Hin1I GRCGYC 3 cut(s) 5, 915, 1214
Hin1II CATG 7 cut(s) 32, 127, 384, 410, 622, 1124, 1212
Hin6I GCGC 2 cut(s) 5, 714
HinP1I GCGC 2 cut(s) 5, 714
HincII GTYRAC 2 cut(s) 462, 1218
HindII GTYRAC 2 cut(s) 462, 1218
HindIII AAGCTT 1 cut(s) 54
HinfI GANTC 9 cut(s) 116, 202, 208, 248, 581, 674, 800, 971, 1238
HpaII CCGG 4 cut(s) 12, 1029, 1165, 1318
HphI GGTGA 4 cut(s) 87, 782, 974, 980
Hpy166II GTNNAC 3 cut(s) 462, 1218, 1351
Hpy8I GTNNAC 3 cut(s) 462, 1218, 1351
HpyAV CCTTC 2 cut(s) 1171, 1317
HpyCH4III ACNGT 5 cut(s) 167, 446, 782, 944, 1039
HpyCH4IV ACGT 3 cut(s) 915, 1004, 1214
HpyCH4V TGCA 5 cut(s) 82, 149, 173, 1080, 1141
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 1006
HpyF3I CTNAG 4 cut(s) 48, 670, 796, 833
HpySE526I ACGT 3 cut(s) 915, 1004, 1214
Hsp92I GRCGYC 3 cut(s) 5, 915, 1214
Hsp92II CATG 7 cut(s) 32, 127, 384, 410, 622, 1124, 1212
HspAI GCGC 2 cut(s) 5, 714
KasI GGCGCC 1 cut(s) 4
Kpn2I TCCGGA 2 cut(s) 11, 1164
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 6 cut(s) 274, 809, 878, 1061, 1091, 1382
Lsp1109I GCAGC 2 cut(s) 66, 989
LweI GCATC 1 cut(s) 182
MaeI CTAG 1 cut(s) 1359
MaeII ACGT 3 cut(s) 915, 1004, 1214
MaeIII GTNAC 1 cut(s) 161
MalI GATC 6 cut(s) 276, 811, 880, 1063, 1093, 1384
MboI GATC 6 cut(s) 274, 809, 878, 1061, 1091, 1382
MboII GAAGA 6 cut(s) 706, 740, 863, 1136, 1297, 1333
MflI RGATCY 4 cut(s) 878, 1061, 1091, 1382
MhlI GDGCHC 1 cut(s) 998
Mly113I GGCGCC 1 cut(s) 5
MlyI GAGTC 2 cut(s) 217, 668
MmeI TCCRAC 2 cut(s) 1089, 1151
MnlI CCTC 8 cut(s) 116, 264, 432, 568, 714, 1382, 1396, 1400
Mph1103I ATGCAT 1 cut(s) 175
MroI TCCGGA 2 cut(s) 11, 1164
MseI TTAA 7 cut(s) 213, 348, 386, 606, 651, 1014, 1107
MslI CAYNNNNRTG 2 cut(s) 128, 1119
MspA1I CMGCKG 3 cut(s) 79, 662, 1228
MspI CCGG 4 cut(s) 12, 1029, 1165, 1318
MspR9I CCNGG 3 cut(s) 180, 1089, 1318
Mva1269I GAATGC 1 cut(s) 367
MvaI CCWGG 2 cut(s) 180, 1089
MvnI CGCG 2 cut(s) 714, 1000
MwoI GCNNNNNNNGC 2 cut(s) 53, 1006
NarI GGCGCC 1 cut(s) 5
NciI CCSGG 1 cut(s) 1318
NdeII GATC 6 cut(s) 274, 809, 878, 1061, 1091, 1382
NlaIII CATG 7 cut(s) 32, 127, 384, 410, 622, 1124, 1212
NlaIV GGNNCC 4 cut(s) 6, 74, 156, 1033
NmeAIII GCCGAG 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 161
NsiI ATGCAT 1 cut(s) 175
NspI RCATGY 1 cut(s) 127
NspV TTCGAA 1 cut(s) 1146
PagI TCATGA 1 cut(s) 1120
PciI ACATGT 1 cut(s) 123
PcsI WCGNNNNNNNCGW 1 cut(s) 262
PctI GAATGC 1 cut(s) 367
PfeI GAWTC 7 cut(s) 116, 202, 248, 581, 800, 971, 1238
PfoI TCCNGGA 2 cut(s) 1087, 1316
PkrI GCNGC 2 cut(s) 81, 979
PleI GAGTC 2 cut(s) 216, 668
PluTI GGCGCC 1 cut(s) 8
PpsI GAGTC 2 cut(s) 216, 668
PscI ACATGT 1 cut(s) 123
Psp6I CCWGG 2 cut(s) 178, 1087
PspGI CCWGG 2 cut(s) 178, 1087
PspN4I GGNNCC 4 cut(s) 6, 74, 156, 1033
PspPI GGNCC 8 cut(s) 73, 154, 533, 896, 932, 1008, 1154, 1230
PstNI CAGNNNCTG 1 cut(s) 1094
PsuI RGATCY 4 cut(s) 878, 1061, 1091, 1382
PvuII CAGCTG 2 cut(s) 79, 662
RsaI GTAC 3 cut(s) 361, 700, 1352
RsaNI GTAC 3 cut(s) 360, 699, 1351
RseI CAYNNNNRTG 2 cut(s) 128, 1119
SaqAI TTAA 7 cut(s) 213, 348, 386, 606, 651, 1014, 1107
SatI GCNGC 2 cut(s) 80, 978
Sau3AI GATC 6 cut(s) 274, 809, 878, 1061, 1091, 1382
Sau96I GGNCC 8 cut(s) 73, 154, 533, 896, 932, 1008, 1154, 1230
SchI GAGTC 2 cut(s) 217, 668
ScrFI CCNGG 3 cut(s) 180, 1089, 1318
SduI GDGCHC 1 cut(s) 998
SfaNI GCATC 1 cut(s) 182
SfoI GGCGCC 1 cut(s) 6
SfuI TTCGAA 1 cut(s) 1146
SinI GGWCC 7 cut(s) 73, 154, 533, 896, 932, 1154, 1230
SmiMI CAYNNNNRTG 2 cut(s) 128, 1119
SsiI CCGC 4 cut(s) 220, 555, 911, 1228
SspDI GGCGCC 1 cut(s) 4
SspMI CTAG 1 cut(s) 1359
StyD4I CCNGG 3 cut(s) 178, 1087, 1316
StyI CCWWGG 2 cut(s) 752, 1358
TaaI ACNGT 5 cut(s) 167, 446, 782, 944, 1039
TaiI ACGT 3 cut(s) 918, 1007, 1217
TaqI TCGA 4 cut(s) 190, 313, 1146, 1392
TatI WGTACW 3 cut(s) 359, 698, 1350
TfiI GAWTC 7 cut(s) 116, 202, 248, 581, 800, 971, 1238
Tru1I TTAA 7 cut(s) 213, 348, 386, 606, 651, 1014, 1107
Tru9I TTAA 7 cut(s) 213, 348, 386, 606, 651, 1014, 1107
TscAI CASTG 2 cut(s) 849, 1042
TseFI GTSAC 1 cut(s) 161
TseI GCWGC 2 cut(s) 79, 977
Tsp45I GTSAC 1 cut(s) 161
TspGWI ACGGA 1 cut(s) 329
TspRI CASTG 2 cut(s) 849, 1042
VpaK11BI GGWCC 7 cut(s) 73, 154, 533, 896, 932, 1154, 1230
XapI RAATTY 7 cut(s) 224, 411, 502, 526, 602, 704, 1193
XceI RCATGY 1 cut(s) 127
XcmI CCANNNNNNNNNTGG 1 cut(s) 517
XmaJI CCTAGG 1 cut(s) 1358
XspI CTAG 1 cut(s) 1359
ZraI GACGTC 2 cut(s) 916, 1215
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.