Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0004237

Physical Location & Seq

Genomic Coordinates Forward (+)

5260540 .. 5262319

Gene Structure 1780 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0068200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1335 bp

ATGAGGTTGAGAATGGCAGAGCTTTCCAAATTGCCACAAGAGATGAAGGTGCGAATCCTGTCAAGGCTGCCTCCAAAATCTCTTATGCGATTCAAATGCGTCCATAGATCCTGGCATGCTTGGATCAGTAGCCCCAATTTCGCAGCCAAACACGTCTCCGTTTCGAAGCACAACAAATTCTCCTCCACCACTACCATTCTTTTCAAACGTTATGTTCTTGACCTCAACACTGACAAGAGGGAAATGGTATTGTCATTGTTTGATCTTTGCCATGATAATAATTGTGTTGATGATGACGATCACCTTAATCCTTTAATGGAGGACCTCCATGTTCCGCAGTCTATGGGTCTAAAAAGGAGGGACATATGGACCGGGATCGAGTATATAGAAATTGCGTGTCACTGCAATGGAATCATTTGCTTAACCGATTACAGGAAAAGAGTTGTTTTATGCAATCCAGCAATTAAGGAATTCAACCGTCTTCCCGTGTCAAGTCTTGCTCTCTCTTCTGCTGATATTAGACCCAGTGGGTCATCTACAGCTGCTGTAGGATTTGGCTGTGATCTCAAATCTGAAGATTATAAAGTTGTTAGAATTTTACATTCTGCACGAGAGTTTAAGGATAATGATATGGTCATACATCCTCCCAAAGCAGAAGTATTCAGCCTCGTTACAAGGTCTTGGAAAGAAATCAAGACTGATAATCTTGACAATGAAAGTACAAATATTTGGCCCGATTCAACTGTCTGCATATACTGTAAAGGAAATCTTTATTGGCGTGGACATGAAGAACAGAAGGAATATTTTGATGTTAGCTACTCCTATACAGACGAGGACAATAATTCAGGAGATGAAACTTTTATATTCGAGGACAAAGAGCGGATCATTGCATTTGACATTGGCAGTGAGACATTTCATGTTATATCTTTTCCAAACGGTTATTATTACTATCATAAGGTTTTTGGCTTGTGGAATGACTCCATCGCAGTGAGTACTAGTTGGTGTTCGGAAAATCCATGCATAGACATATGGGTGCTGGATAACATTGGTGGGGTTAAGGGGTCGTGGATAAACTGCTTATCCATTGATCCAGTTGTGAACATTGAATTTCCATTGGCATTTGTTGGGAAGAGTGGGCAATCTCTTTTGGTTGCCGTGGATCGTTGTTTAGTAATTTTGTGTGACTATACTACCTCAAAATTGAAGTATCTTCCTGTTAATGGAGTGTCTCTCTGGAACTCTCAAGCTCTTTTTTACGTGAATAGTGTAGTTTCAGTTAAGGGATACACTGATTGTAGCGATAGAATAATTCCTAACCTTGTTCTGGAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELM2

Protein Analysis

444

Amino Acids

50.7

Weight (kDa)

5.93

Isoelectric Point (pI)

44.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box	PF00646	8 - 47	2.4e-09	F-box domain
F-box-like	PF12937	9 - 45	3.6e-07	F-box-like
FBA_1	PF07734	129 - 401	6.4e-23	F-box associated beta propeller domain
FBA_3	PF08268	129 - 271	1.8e-07	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004237)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12001 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700
malus_domestica	MD04G1147000.v1.1 MD12G1160300.v1.1
prunus_persica	Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1
pyrus_communis	pycom04g13280 pycom12g15210
rosa_chinensis	RchiOBHm_Chr3g0463841 RchiOBHm_Chr3g0470651
rosa_laevigata	RLG00000024250 RLG00000024752
rosa_multiflora	Rmu_co8471153.1_g000001 Rmu_sc0004796.1_g000007
rosa_roxburghii	Rroxscaffold_6G00410630
rosa_rugosa	Rorug03G0068200 Rorug03G0068300 Rorug03G0111300 Rorug03G0111400
rosa_samantha	Rh3AG125500 Rh3AG161000 Rh3BG129600 Rh3BG185600 Rh3CG132100 Rh3CG175900 Rh3DG189200
rosa_wichuraiana	Rw3G010590 Rw3G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	582
AccBSI	CCGCTC	1 cut(s)	880
AciI	CCGC	2 cut(s)	335, 880
AclI	AACGTT	1 cut(s)	208
AclWI	GGATC	6 cut(s)	102, 131, 383, 890, 1082, 1167
AcsI	RAATTY	4 cut(s)	176, 470, 594, 1106
AcuI	CTGAAG	1 cut(s)	594
AfaI	GTAC	2 cut(s)	721, 994
AfiI	CCNNNNNNNGG	3 cut(s)	432, 1220, 1324
AflIII	ACRYGT	1 cut(s)	151
AgsI	TTSAA	6 cut(s)	94, 205, 475, 741, 1106, 1204
AhlI	ACTAGT	1 cut(s)	995
AjiI	CACGTC	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	110
AjuI	GAANNNNNNNTTGG	2 cut(s)	757, 789
AluBI	AGCT	5 cut(s)	22, 542, 816, 1247, 1331
AluI	AGCT	5 cut(s)	22, 542, 816, 1247, 1331
Alw26I	GTCTC	3 cut(s)	160, 902, 1233
AlwI	GGATC	6 cut(s)	102, 131, 383, 890, 1082, 1167
AlwNI	CAGNNNCTG	1 cut(s)	545
AoxI	GGCC	1 cut(s)	731
ApeKI	GCWGC	3 cut(s)	67, 143, 542
ApoI	RAATTY	4 cut(s)	176, 470, 594, 1106
AspS9I	GGNCC	3 cut(s)	322, 369, 732
AsuC2I	CCSGG	1 cut(s)	373
AsuHPI	GGTGA	1 cut(s)	293
AsuII	TTCGAA	1 cut(s)	164
AvaII	GGWCC	2 cut(s)	322, 369
BauI	CACGAG	1 cut(s)	609
BbsI	GAAGAC	1 cut(s)	473
BbvI	GCAGC	3 cut(s)	54, 155, 529
BccI	CCATC	1 cut(s)	989
BceAI	ACGGC	1 cut(s)	1139
BcgI	CGANNNNNNTGC	2 cut(s)	78, 112
BciT130I	CCWGG	1 cut(s)	112
BciVI	GTATCC	1 cut(s)	1277
BcnI	CCSGG	1 cut(s)	373
BcoDI	GTCTC	3 cut(s)	160, 902, 1233
BcuI	ACTAGT	1 cut(s)	995
BfaI	CTAG	1 cut(s)	996
BfmI	CTRYAG	2 cut(s)	537, 546
BfuI	GTATCC	1 cut(s)	1277
BisI	GCNGC	3 cut(s)	68, 144, 543
BlsI	GCNGC	3 cut(s)	69, 145, 544
BmcAI	AGTACT	1 cut(s)	994
Bme1390I	CCNGG	2 cut(s)	112, 373
Bme18I	GGWCC	2 cut(s)	322, 369
BmgBI	CACGTC	1 cut(s)	154
BmgT120I	GGNCC	3 cut(s)	322, 369, 732
BmrFI	CCNGG	2 cut(s)	112, 373
BmrI	ACTGGG	1 cut(s)	519
BmuI	ACTGGG	1 cut(s)	519
BpiI	GAAGAC	1 cut(s)	473
BplI	GAGNNNNNCTC	2 cut(s)	1215, 1247
Bpu14I	TTCGAA	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	1227
BpuMI	CCSGG	1 cut(s)	373
BsaAI	YACGTR	1 cut(s)	1258
BsaBI	GATNNNNATC	1 cut(s)	297
BsaJI	CCNNGG	1 cut(s)	1155
BsaXI	ACNNNNNCTCC	2 cut(s)	164, 194
Bsc4I	CCNNNNNNNGG	3 cut(s)	432, 1220, 1324
Bse1I	ACTGG	2 cut(s)	525, 1091
Bse3DI	GCAATG	2 cut(s)	412, 885
Bse8I	GATNNNNATC	1 cut(s)	297
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	1 cut(s)	1155
BseGI	GGATG	1 cut(s)	640
BseJI	GATNNNNATC	1 cut(s)	297
BseLI	CCNNNNNNNGG	3 cut(s)	432, 1220, 1324
BseMI	GCAATG	2 cut(s)	412, 885
BseNI	ACTGG	2 cut(s)	525, 1091
BseRI	GAGGAG	1 cut(s)	172
BseXI	GCAGC	3 cut(s)	54, 155, 529
BsgI	GTGCAG	1 cut(s)	591
BshFI	GGCC	1 cut(s)	733
BsiSI	CCGG	1 cut(s)	372
BslFI	GGGAC	1 cut(s)	374
BslI	CCNNNNNNNGG	3 cut(s)	432, 1220, 1324
BsmAI	GTCTC	3 cut(s)	160, 902, 1233
BsmBI	CGTCTC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	374
BsnI	GGCC	1 cut(s)	733
Bsp119I	TTCGAA	1 cut(s)	164
Bsp143I	GATC	9 cut(s)	107, 123, 262, 298, 375, 562, 882, 1087, 1159
BspACI	CCGC	2 cut(s)	335, 880
BspANI	GGCC	1 cut(s)	733
BspPI	GGATC	6 cut(s)	102, 131, 383, 890, 1082, 1167
BspT104I	TTCGAA	1 cut(s)	164
BsrBI	CCGCTC	1 cut(s)	880
BsrDI	GCAATG	2 cut(s)	412, 885
BsrI	ACTGG	2 cut(s)	525, 1091
BssECI	CCNNGG	1 cut(s)	1155
BssMI	GATC	9 cut(s)	107, 123, 262, 298, 375, 562, 882, 1087, 1159
BssSI	CACGAG	1 cut(s)	609
Bst2BI	CACGAG	1 cut(s)	609
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	4 cut(s)	479, 745, 758, 938
Bst6I	CTCTTC	2 cut(s)	511, 1124
BstBAI	YACGTR	1 cut(s)	1258
BstBI	TTCGAA	1 cut(s)	164
BstC8I	GCNNGC	1 cut(s)	117
BstDSI	CCRYGG	1 cut(s)	1155
BstF5I	GGATG	1 cut(s)	640
BstKTI	GATC	9 cut(s)	110, 126, 265, 301, 378, 565, 885, 1090, 1162
BstMAI	GTCTC	3 cut(s)	160, 902, 1233
BstMBI	GATC	9 cut(s)	107, 123, 262, 298, 375, 562, 882, 1087, 1159
BstNI	CCWGG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	2 cut(s)	110, 371
BstSFI	CTRYAG	2 cut(s)	537, 546
BstV1I	GCAGC	3 cut(s)	54, 155, 529
BstV2I	GAAGAC	1 cut(s)	473
BstX2I	RGATCY	1 cut(s)	107
BstYI	RGATCY	1 cut(s)	107
BsuI	GTATCC	1 cut(s)	1277
BsuRI	GGCC	1 cut(s)	733
BtgI	CCRYGG	1 cut(s)	1155
BtgZI	GCGATG	1 cut(s)	967
BtrI	CACGTC	1 cut(s)	154
BtsCI	GGATG	1 cut(s)	640
BtsI	GCAGTG	3 cut(s)	400, 910, 993
BtsIMutI	CAGTG	6 cut(s)	228, 400, 532, 910, 993, 1287
Cac8I	GCNNGC	1 cut(s)	117
CaiI	CAGNNNCTG	1 cut(s)	545
Cfr13I	GGNCC	3 cut(s)	322, 369, 732
CseI	GACGC	1 cut(s)	88
Csp6I	GTAC	2 cut(s)	720, 993
CviAII	CATG	6 cut(s)	116, 272, 329, 785, 917, 1017
CviQI	GTAC	2 cut(s)	720, 993
DpnI	GATC	9 cut(s)	109, 125, 264, 300, 377, 564, 884, 1089, 1161
DpnII	GATC	9 cut(s)	107, 123, 262, 298, 375, 562, 882, 1087, 1159
Eam1104I	CTCTTC	2 cut(s)	511, 1124
EarI	CTCTTC	2 cut(s)	511, 1124
Eco47I	GGWCC	2 cut(s)	322, 369
Eco57I	CTGAAG	1 cut(s)	594
EcoO109I	RGGNCCY	1 cut(s)	322
EcoRI	GAATTC	1 cut(s)	470
EcoRII	CCWGG	1 cut(s)	110
EcoT22I	ATGCAT	1 cut(s)	1022
Esp3I	CGTCTC	1 cut(s)	160
FaeI	CATG	6 cut(s)	119, 275, 332, 788, 920, 1020
FalI	AAGNNNNNCTT	2 cut(s)	753, 785
FaqI	GGGAC	1 cut(s)	374
FatI	CATG	6 cut(s)	115, 271, 328, 784, 916, 1016
FauNDI	CATATG	2 cut(s)	365, 1028
Fnu4HI	GCNGC	3 cut(s)	68, 144, 543
FokI	GGATG	1 cut(s)	627
Fsp4HI	GCNGC	3 cut(s)	68, 144, 543
FspBI	CTAG	1 cut(s)	996
GluI	GCNGC	3 cut(s)	68, 144, 543
HaeIII	GGCC	1 cut(s)	733
HapII	CCGG	1 cut(s)	372
HgaI	GACGC	1 cut(s)	88
Hin1II	CATG	6 cut(s)	119, 275, 332, 788, 920, 1020
HindIII	AAGCTT	1 cut(s)	1329
HinfI	GANTC	5 cut(s)	54, 90, 411, 737, 977
HpaII	CCGG	1 cut(s)	372
HphI	GGTGA	1 cut(s)	293
Hpy166II	GTNNAC	2 cut(s)	782, 1099
Hpy188I	TCNGA	2 cut(s)	574, 1009
Hpy188III	TCNNGA	6 cut(s)	218, 694, 707, 846, 1234, 1325
Hpy8I	GTNNAC	2 cut(s)	782, 1099
HpyAV	CCTTC	2 cut(s)	40, 790
HpyCH4III	ACNGT	4 cut(s)	479, 745, 758, 938
HpyCH4IV	ACGT	3 cut(s)	153, 208, 1257
HpyCH4V	TGCA	6 cut(s)	405, 453, 608, 750, 890, 1020
HpySE526I	ACGT	3 cut(s)	153, 208, 1257
Hsp92II	CATG	6 cut(s)	119, 275, 332, 788, 920, 1020
Kzo9I	GATC	9 cut(s)	107, 123, 262, 298, 375, 562, 882, 1087, 1159
Lsp1109I	GCAGC	3 cut(s)	54, 155, 529
MaeI	CTAG	1 cut(s)	996
MaeII	ACGT	3 cut(s)	153, 208, 1257
MaeIII	GTNAC	3 cut(s)	398, 670, 1181
MalI	GATC	9 cut(s)	109, 125, 264, 300, 377, 564, 884, 1089, 1161
MbiI	CCGCTC	1 cut(s)	880
MboI	GATC	9 cut(s)	107, 123, 262, 298, 375, 562, 882, 1087, 1159
MboII	GAAGA	6 cut(s)	473, 498, 587, 800, 1141, 1202
MflI	RGATCY	1 cut(s)	107
MlyI	GAGTC	1 cut(s)	971
Mph1103I	ATGCAT	1 cut(s)	1022
MseI	TTAA	8 cut(s)	306, 314, 422, 465, 618, 1056, 1218, 1278
MslI	CAYNNNNRTG	3 cut(s)	405, 986, 1031
MspA1I	CMGCKG	1 cut(s)	542
MspI	CCGG	1 cut(s)	372
MspR9I	CCNGG	2 cut(s)	112, 373
MvaI	CCWGG	1 cut(s)	112
NciI	CCSGG	1 cut(s)	373
NdeI	CATATG	2 cut(s)	365, 1028
NdeII	GATC	9 cut(s)	107, 123, 262, 298, 375, 562, 882, 1087, 1159
NlaIII	CATG	6 cut(s)	119, 275, 332, 788, 920, 1020
NmuCI	GTSAC	2 cut(s)	398, 1181
NsiI	ATGCAT	1 cut(s)	1022
NspI	RCATGY	1 cut(s)	119
NspV	TTCGAA	1 cut(s)	164
PaeI	GCATGC	1 cut(s)	119
PfeI	GAWTC	4 cut(s)	54, 90, 411, 737
PkrI	GCNGC	3 cut(s)	69, 145, 544
PleI	GAGTC	1 cut(s)	971
PpsI	GAGTC	1 cut(s)	971
Ppu21I	YACGTR	1 cut(s)	1258
PpuMI	RGGWCCY	1 cut(s)	322
PsiI	TTATAA	1 cut(s)	582
Psp1406I	AACGTT	1 cut(s)	208
Psp5II	RGGWCCY	1 cut(s)	322
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspPI	GGNCC	3 cut(s)	322, 369, 732
PspPPI	RGGWCCY	1 cut(s)	322
PstNI	CAGNNNCTG	1 cut(s)	545
PsuI	RGATCY	1 cut(s)	107
PvuII	CAGCTG	1 cut(s)	542
RsaI	GTAC	2 cut(s)	721, 994
RsaNI	GTAC	2 cut(s)	720, 993
RseI	CAYNNNNRTG	3 cut(s)	405, 986, 1031
SaqAI	TTAA	8 cut(s)	306, 314, 422, 465, 618, 1056, 1218, 1278
SatI	GCNGC	3 cut(s)	68, 144, 543
Sau3AI	GATC	9 cut(s)	107, 123, 262, 298, 375, 562, 882, 1087, 1159
Sau96I	GGNCC	3 cut(s)	322, 369, 732
ScaI	AGTACT	1 cut(s)	994
SchI	GAGTC	1 cut(s)	971
ScrFI	CCNGG	2 cut(s)	112, 373
SfcI	CTRYAG	2 cut(s)	537, 546
SfuI	TTCGAA	1 cut(s)	164
SinI	GGWCC	2 cut(s)	322, 369
SmiMI	CAYNNNNRTG	3 cut(s)	405, 986, 1031
SmlI	CTYRAG	1 cut(s)	1242
SmoI	CTYRAG	1 cut(s)	1242
SpeI	ACTAGT	1 cut(s)	995
SphI	GCATGC	1 cut(s)	119
SsiI	CCGC	2 cut(s)	335, 880
SspI	AATATT	2 cut(s)	727, 803
SspMI	CTAG	1 cut(s)	996
StyD4I	CCNGG	2 cut(s)	110, 371
TaaI	ACNGT	4 cut(s)	479, 745, 758, 938
TaiI	ACGT	3 cut(s)	156, 211, 1260
TaqI	TCGA	3 cut(s)	164, 378, 867
TatI	WGTACW	2 cut(s)	719, 992
TfiI	GAWTC	4 cut(s)	54, 90, 411, 737
Tru1I	TTAA	8 cut(s)	306, 314, 422, 465, 618, 1056, 1218, 1278
Tru9I	TTAA	8 cut(s)	306, 314, 422, 465, 618, 1056, 1218, 1278
TscAI	CASTG	6 cut(s)	235, 407, 532, 910, 993, 1294
TseFI	GTSAC	2 cut(s)	398, 1181
TseI	GCWGC	3 cut(s)	67, 143, 542
Tsp45I	GTSAC	2 cut(s)	398, 1181
TspDTI	ATGAA	5 cut(s)	59, 729, 801, 867, 905
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	6 cut(s)	235, 407, 532, 910, 993, 1294
VpaK11BI	GGWCC	2 cut(s)	322, 369
XapI	RAATTY	4 cut(s)	176, 470, 594, 1106
XceI	RCATGY	1 cut(s)	119
XspI	CTAG	1 cut(s)	996
ZrmI	AGTACT	1 cut(s)	994
Zsp2I	ATGCAT	1 cut(s)	1022

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.