Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0004237

Physical Location & Seq

Genomic Coordinates Forward (+)

23535583 .. 23538698

Gene Structure 3116 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1147000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGCTCCTTCAAGAAGTCGTGGTCATGACAATCAAGAGAGTGCTAAGAAAGCTTCTTTTCCAATGGGGGACCAGCTGCAAAAATGGAAATCACCTTTTGGCCTCTATGCTGATTCTGACATGTTGGTGTGGTTGAAAGGACTTGCATTGGACCCTTGTGACCAGAAAGCATCTCCTGATTCAGCTCGACAACTATGGAATCAGACTCTTAAAGTGCGGAAATTCTTGCTTCTTGGTAATGCCGAATCTCCTCGGAGAAAGCGAACACTTGATCAGTTCCTAAAAGTTAGTAAGTTTGCAGAAGTTTCTCGATTGCATCCTGAGAAATCTGATGTCCATAGTGTCAAAAGATTGAGTACAGGGCATTCCGTCTCATGCTTAACCCATACAAATGCCAACAATGGAATTTCCAAACCACAGCTTCTCTCTAGCTCTCACGGTTCAGGAAGTTTGTTAACATCTGAAGATGAATATCATGGGAAGCCAGGTTCAACATATTTGACCTCTATGGATATGGAAAATTATGGTGCATCTTGCAAGGATAATTCTGCCTCTCCTTTATTTGATACAGATGAATCGAACAATGGTCTGAACACATTGAATCCCAAAAACTTGAGATTCTCTGATGCAACTTTTGCGAATGTTAATGATACAGCCAATAGCTCAGACTCTCCAAGTTTAGAAGAGAATAGTACAGAACTTGAACGTGCGTTGAGGTGTATGATTTTTAGTGATGATTATCTTCCAAGATGTATTCCTGTGAGAGATTTTGATGGTTCAGTTCACTATTCAGATTCATCCAGGTCAATGGAGCAAAATCTGAAACTTCGAGAAGCGGTGAGATTACTATTTACAGATGGTAGTCTTCCGATATCTGTTGTTCCGACTGGTCCTTGTTTTCAGGCGGACGTCCCAGAATGGACAGGTCCAGTAAATAGGAAAACTCTTTATGGTGGTGGTGATTCAGCAGCGTTAAAGTGGTTGGGCATGCGAACGTGGCCCATTAAAGGAAAAAGTGCAGGAACCACAGTGAAAGCACTTGGGAAAGGGAGGTCCAACTCTTGTTCTTGCATATCTCCAGGATCTGTTGGTTGTGTTAAACTCCACATTCATGAACAAAGACTCCTCTTGCAATTCGAACTTGGTTCTGCCTTCCGGAGTTGGAAGTTTGACGAAATGGGAGAATTTGTCTCAAAGTCATGGACATCAACTGAACAGCAGAACTTTGAATCTCTTATGAAAGTGAATCCACTATCAAATGAAGCAAGTTTTTGGAAGATCGCCTATAAGCGTTTCCCTTCCAAGTCTCGGAAGAGCATTTTGAATTATTACTATAACGTGTACATCCCTAGGCGTATGAGCCTCCAGACCAGATCCTCCTGCGATAAAATTGACAGCGACGATGATGAGGCAGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELM2

Protein Analysis

474

Amino Acids

52.77

Weight (kDa)

8.39

Isoelectric Point (pI)

47.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004237)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12001 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700
malus_domestica	MD04G1147000.v1.1 MD12G1160300.v1.1
prunus_persica	Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1
pyrus_communis	pycom04g13280 pycom12g15210
rosa_chinensis	RchiOBHm_Chr3g0463841 RchiOBHm_Chr3g0470651
rosa_laevigata	RLG00000024250 RLG00000024752
rosa_multiflora	Rmu_co8471153.1_g000001 Rmu_sc0004796.1_g000007
rosa_roxburghii	Rroxscaffold_6G00410630
rosa_rugosa	Rorug03G0068200 Rorug03G0068300 Rorug03G0111300 Rorug03G0111400
rosa_samantha	Rh3AG125500 Rh3AG161000 Rh3BG129600 Rh3BG185600 Rh3CG132100 Rh3CG175900 Rh3DG189200
rosa_wichuraiana	Rw3G010590 Rw3G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	912
AccIII	TCCGGA	1 cut(s)	1155
AciI	CCGC	3 cut(s)	217, 836, 905
AclWI	GGATC	2 cut(s)	1090, 1368
AcsI	RAATTY	3 cut(s)	221, 405, 1184
AcuI	CTGAAG	1 cut(s)	483
AcyI	GRCGYC	1 cut(s)	909
AfaI	GTAC	3 cut(s)	358, 694, 1343
AfiI	CCNNNNNNNGG	2 cut(s)	1007, 1308
AflIII	ACRYGT	2 cut(s)	120, 1338
AgsI	TTSAA	7 cut(s)	12, 136, 492, 601, 704, 1229, 1324
AjnI	CCWGG	3 cut(s)	484, 800, 1078
AloI	GAACNNNNNNTCC	4 cut(s)	472, 504, 1107, 1139
AluBI	AGCT	6 cut(s)	53, 76, 185, 421, 432, 663
AluI	AGCT	6 cut(s)	53, 76, 185, 421, 432, 663
Alw26I	GTCTC	3 cut(s)	376, 1195, 1311
AlwI	GGATC	2 cut(s)	1090, 1368
AlwNI	CAGNNNCTG	1 cut(s)	1085
Aor13HI	TCCGGA	1 cut(s)	1155
AoxI	GGCC	2 cut(s)	100, 998
ApeKI	GCWGC	2 cut(s)	76, 968
ApoI	RAATTY	3 cut(s)	221, 405, 1184
AspA2I	CCTAGG	1 cut(s)	1349
AspS9I	GGNCC	6 cut(s)	70, 151, 890, 926, 999, 1053
AsuHPI	GGTGA	3 cut(s)	84, 850, 971
AsuII	TTCGAA	1 cut(s)	1137
AvaII	GGWCC	5 cut(s)	70, 151, 890, 926, 1053
AvrII	CCTAGG	1 cut(s)	1349
BbsI	GAAGAC	1 cut(s)	857
BbvI	GCAGC	2 cut(s)	63, 980
BccI	CCATC	2 cut(s)	767, 851
BciT130I	CCWGG	3 cut(s)	486, 802, 1080
BclI	TGATCA	1 cut(s)	271
BcoDI	GTCTC	3 cut(s)	376, 1195, 1311
BfaI	CTAG	2 cut(s)	429, 1350
BisI	GCNGC	2 cut(s)	77, 969
BlnI	CCTAGG	1 cut(s)	1349
BlsI	GCNGC	2 cut(s)	78, 970
Bme1390I	CCNGG	3 cut(s)	486, 802, 1080
Bme18I	GGWCC	5 cut(s)	70, 151, 890, 926, 1053
BmgT120I	GGNCC	6 cut(s)	70, 151, 890, 926, 999, 1053
BmiI	GGNNCC	4 cut(s)	6, 71, 153, 1024
BmrFI	CCNGG	3 cut(s)	486, 802, 1080
BmsI	GCATC	4 cut(s)	179, 325, 539, 616
BpiI	GAAGAC	1 cut(s)	857
BpmI	CTGGAG	2 cut(s)	1062, 1349
Bpu14I	TTCGAA	1 cut(s)	1137
BpuEI	CTTGAG	1 cut(s)	634
BsaBI	GATNNNNATC	2 cut(s)	471, 738
BsaHI	GRCGYC	1 cut(s)	909
BsaJI	CCNNGG	2 cut(s)	251, 1349
BsaWI	WCCGGW	1 cut(s)	1155
BsaXI	ACNNNNNCTCC	4 cut(s)	1107, 1137, 1173, 1203
Bsc4I	CCNNNNNNNGG	2 cut(s)	1007, 1308
Bse1I	ACTGG	2 cut(s)	892, 929
Bse8I	GATNNNNATC	2 cut(s)	471, 738
BseAI	TCCGGA	1 cut(s)	1155
BseBI	CCWGG	3 cut(s)	486, 802, 1080
BseDI	CCNNGG	2 cut(s)	251, 1349
BseGI	GGATG	3 cut(s)	316, 797, 1344
BseJI	GATNNNNATC	2 cut(s)	471, 738
BseLI	CCNNNNNNNGG	2 cut(s)	1007, 1308
BseMII	CTCAG	2 cut(s)	312, 678
BseNI	ACTGG	2 cut(s)	892, 929
BseRI	GAGGAG	2 cut(s)	240, 1115
BseXI	GCAGC	2 cut(s)	63, 980
BsgI	GTGCAG	1 cut(s)	1038
BshFI	GGCC	2 cut(s)	102, 1000
BsiSI	CCGG	1 cut(s)	1156
BslFI	GGGAC	2 cut(s)	83, 896
BslI	CCNNNNNNNGG	2 cut(s)	1007, 1308
BsmAI	GTCTC	3 cut(s)	376, 1195, 1311
BsmBI	CGTCTC	1 cut(s)	376
BsmFI	GGGAC	2 cut(s)	83, 896
BsmI	GAATGC	1 cut(s)	364
BsnI	GGCC	2 cut(s)	102, 1000
Bsp119I	TTCGAA	1 cut(s)	1137
Bsp13I	TCCGGA	1 cut(s)	1155
Bsp1407I	TGTACA	1 cut(s)	1341
Bsp143I	GATC	4 cut(s)	271, 1082, 1278, 1373
BspACI	CCGC	3 cut(s)	217, 836, 905
BspANI	GGCC	2 cut(s)	102, 1000
BspCNI	CTCAG	2 cut(s)	313, 677
BspEI	TCCGGA	1 cut(s)	1155
BspHI	TCATGA	2 cut(s)	25, 1111
BspLI	GGNNCC	4 cut(s)	6, 71, 153, 1024
BspPI	GGATC	2 cut(s)	1090, 1368
BspQI	GCTCTTC	1 cut(s)	1307
BspT104I	TTCGAA	1 cut(s)	1137
BsrGI	TGTACA	1 cut(s)	1341
BsrI	ACTGG	2 cut(s)	892, 929
BssECI	CCNNGG	2 cut(s)	251, 1349
BssMI	GATC	4 cut(s)	271, 1082, 1278, 1373
BssNI	GRCGYC	1 cut(s)	909
BssT1I	CCWWGG	1 cut(s)	1349
Bst2UI	CCWGG	3 cut(s)	486, 802, 1080
Bst4CI	ACNGT	2 cut(s)	440, 1030
Bst6I	CTCTTC	3 cut(s)	678, 1307, 1410
BstACI	GRCGYC	1 cut(s)	909
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstAUI	TGTACA	1 cut(s)	1341
BstBI	TTCGAA	1 cut(s)	1137
BstC8I	GCNNGC	1 cut(s)	989
BstDEI	CTNAG	3 cut(s)	45, 321, 664
BstF5I	GGATG	3 cut(s)	316, 797, 1344
BstKTI	GATC	4 cut(s)	274, 1085, 1281, 1376
BstMAI	GTCTC	3 cut(s)	376, 1195, 1311
BstMBI	GATC	4 cut(s)	271, 1082, 1278, 1373
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 635, 997
BstNI	CCWGG	3 cut(s)	486, 802, 1080
BstNSI	RCATGY	2 cut(s)	124, 991
BstSCI	CCNGG	3 cut(s)	484, 800, 1078
BstV1I	GCAGC	2 cut(s)	63, 980
BstV2I	GAAGAC	1 cut(s)	857
BstX2I	RGATCY	2 cut(s)	1082, 1373
BstXI	CCANNNNNNTGG	1 cut(s)	808
BstYI	RGATCY	2 cut(s)	1082, 1373
BsuRI	GGCC	2 cut(s)	102, 1000
BtsCI	GGATG	3 cut(s)	316, 797, 1344
BtsIMutI	CAGTG	1 cut(s)	1035
Cac8I	GCNNGC	1 cut(s)	989
CaiI	CAGNNNCTG	1 cut(s)	1085
CciI	TCATGA	2 cut(s)	25, 1111
Cfr13I	GGNCC	6 cut(s)	70, 151, 890, 926, 999, 1053
Csp6I	GTAC	3 cut(s)	357, 693, 1342
CviAII	CATG	7 cut(s)	26, 121, 375, 476, 988, 1112, 1200
CviQI	GTAC	3 cut(s)	357, 693, 1342
DdeI	CTNAG	3 cut(s)	45, 321, 664
DpnI	GATC	4 cut(s)	273, 1084, 1280, 1375
DpnII	GATC	4 cut(s)	271, 1082, 1278, 1373
Eam1104I	CTCTTC	3 cut(s)	678, 1307, 1410
EarI	CTCTTC	3 cut(s)	678, 1307, 1410
EciI	GGCGGA	1 cut(s)	920
Eco130I	CCWWGG	1 cut(s)	1349
Eco32I	GATATC	1 cut(s)	873
Eco47I	GGWCC	5 cut(s)	70, 151, 890, 926, 1053
Eco57I	CTGAAG	1 cut(s)	483
EcoRII	CCWGG	3 cut(s)	484, 800, 1078
EcoRV	GATATC	1 cut(s)	873
EcoT14I	CCWWGG	1 cut(s)	1349
ErhI	CCWWGG	1 cut(s)	1349
Esp3I	CGTCTC	1 cut(s)	376
FaeI	CATG	7 cut(s)	29, 124, 378, 479, 991, 1115, 1203
FaqI	GGGAC	2 cut(s)	83, 896
FatI	CATG	7 cut(s)	25, 120, 374, 475, 987, 1111, 1199
FbaI	TGATCA	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	77, 969
FokI	GGATG	3 cut(s)	303, 784, 1331
Fsp4HI	GCNGC	2 cut(s)	77, 969
FspBI	CTAG	2 cut(s)	429, 1350
GluI	GCNGC	2 cut(s)	77, 969
GsuI	CTGGAG	2 cut(s)	1062, 1349
HaeIII	GGCC	2 cut(s)	102, 1000
HapII	CCGG	1 cut(s)	1156
Hin1I	GRCGYC	1 cut(s)	909
Hin1II	CATG	7 cut(s)	29, 124, 378, 479, 991, 1115, 1203
HincII	GTYRAC	1 cut(s)	456
HindII	GTYRAC	1 cut(s)	456
HindIII	AAGCTT	1 cut(s)	51
HpaI	GTTAAC	1 cut(s)	456
HpaII	CCGG	1 cut(s)	1156
HphI	GGTGA	3 cut(s)	84, 850, 971
Hpy166II	GTNNAC	3 cut(s)	456, 784, 1342
Hpy8I	GTNNAC	3 cut(s)	456, 784, 1342
Hpy99I	CGWCG	1 cut(s)	1403
HpyAV	CCTTC	3 cut(s)	18, 1162, 1308
HpyCH4III	ACNGT	2 cut(s)	440, 1030
HpyCH4IV	ACGT	4 cut(s)	706, 909, 995, 1338
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 635, 997
HpyF3I	CTNAG	3 cut(s)	45, 321, 664
HpySE526I	ACGT	4 cut(s)	706, 909, 995, 1338
Hsp92I	GRCGYC	1 cut(s)	909
Hsp92II	CATG	7 cut(s)	29, 124, 378, 479, 991, 1115, 1203
Kpn2I	TCCGGA	1 cut(s)	1155
Ksp22I	TGATCA	1 cut(s)	271
KspAI	GTTAAC	1 cut(s)	456
Kzo9I	GATC	4 cut(s)	271, 1082, 1278, 1373
LguI	GCTCTTC	1 cut(s)	1307
LmnI	GCTCC	2 cut(s)	10, 811
Lsp1109I	GCAGC	2 cut(s)	63, 980
LweI	GCATC	4 cut(s)	179, 325, 539, 616
MaeI	CTAG	2 cut(s)	429, 1350
MaeII	ACGT	4 cut(s)	706, 909, 995, 1338
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	4 cut(s)	273, 1084, 1280, 1375
MboI	GATC	4 cut(s)	271, 1082, 1278, 1373
MboII	GAAGA	6 cut(s)	476, 695, 734, 857, 1288, 1324
MflI	RGATCY	2 cut(s)	1082, 1373
MluCI	AATT	8 cut(s)	221, 405, 520, 544, 1133, 1184, 1324, 1389
MlyI	GAGTC	3 cut(s)	199, 662, 1116
MmeI	TCCRAC	3 cut(s)	908, 1080, 1142
MroI	TCCGGA	1 cut(s)	1155
MseI	TTAA	7 cut(s)	210, 380, 455, 645, 974, 1005, 1098
MslI	CAYNNNNRTG	3 cut(s)	125, 390, 1110
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	1 cut(s)	1156
MspR9I	CCNGG	3 cut(s)	486, 802, 1080
Mva1269I	GAATGC	1 cut(s)	364
MvaI	CCWGG	3 cut(s)	486, 802, 1080
MwoI	GCNNNNNNNGC	3 cut(s)	50, 635, 997
NdeII	GATC	4 cut(s)	271, 1082, 1278, 1373
NlaIII	CATG	7 cut(s)	29, 124, 378, 479, 991, 1115, 1203
NlaIV	GGNNCC	4 cut(s)	6, 71, 153, 1024
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	2 cut(s)	124, 991
NspV	TTCGAA	1 cut(s)	1137
PaeI	GCATGC	1 cut(s)	991
PagI	TCATGA	2 cut(s)	25, 1111
PciI	ACATGT	1 cut(s)	120
PciSI	GCTCTTC	1 cut(s)	1307
PcsI	WCGNNNNNNNCGW	1 cut(s)	259
PctI	GAATGC	1 cut(s)	364
PfoI	TCCNGGA	1 cut(s)	1078
PkrI	GCNGC	2 cut(s)	78, 970
PleI	GAGTC	3 cut(s)	199, 662, 1116
PpsI	GAGTC	3 cut(s)	199, 662, 1116
PscI	ACATGT	1 cut(s)	120
Psp6I	CCWGG	3 cut(s)	484, 800, 1078
PspGI	CCWGG	3 cut(s)	484, 800, 1078
PspN4I	GGNNCC	4 cut(s)	6, 71, 153, 1024
PspPI	GGNCC	6 cut(s)	70, 151, 890, 926, 999, 1053
PstNI	CAGNNNCTG	1 cut(s)	1085
PsuI	RGATCY	2 cut(s)	1082, 1373
PvuII	CAGCTG	1 cut(s)	76
RsaI	GTAC	3 cut(s)	358, 694, 1343
RsaNI	GTAC	3 cut(s)	357, 693, 1342
RseI	CAYNNNNRTG	3 cut(s)	125, 390, 1110
SapI	GCTCTTC	1 cut(s)	1307
SaqAI	TTAA	7 cut(s)	210, 380, 455, 645, 974, 1005, 1098
SatI	GCNGC	2 cut(s)	77, 969
Sau3AI	GATC	4 cut(s)	271, 1082, 1278, 1373
Sau96I	GGNCC	6 cut(s)	70, 151, 890, 926, 999, 1053
SchI	GAGTC	3 cut(s)	199, 662, 1116
ScrFI	CCNGG	3 cut(s)	486, 802, 1080
SfaNI	GCATC	4 cut(s)	179, 325, 539, 616
SfuI	TTCGAA	1 cut(s)	1137
SinI	GGWCC	5 cut(s)	70, 151, 890, 926, 1053
SmiMI	CAYNNNNRTG	3 cut(s)	125, 390, 1110
SmlI	CTYRAG	1 cut(s)	613
SmoI	CTYRAG	1 cut(s)	613
SphI	GCATGC	1 cut(s)	991
Sse9I	AATT	8 cut(s)	221, 405, 520, 544, 1133, 1184, 1324, 1389
SsiI	CCGC	3 cut(s)	217, 836, 905
SspMI	CTAG	2 cut(s)	429, 1350
StyD4I	CCNGG	3 cut(s)	484, 800, 1078
StyI	CCWWGG	1 cut(s)	1349
TaaI	ACNGT	2 cut(s)	440, 1030
TaiI	ACGT	4 cut(s)	709, 912, 998, 1341
TaqI	TCGA	5 cut(s)	187, 310, 578, 829, 1137
TasI	AATT	8 cut(s)	221, 405, 520, 544, 1133, 1184, 1324, 1389
TatI	WGTACW	3 cut(s)	356, 692, 1341
Tru1I	TTAA	7 cut(s)	210, 380, 455, 645, 974, 1005, 1098
Tru9I	TTAA	7 cut(s)	210, 380, 455, 645, 974, 1005, 1098
TscAI	CASTG	1 cut(s)	1035
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	76, 968
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	7 cut(s)	483, 588, 786, 1100, 1128, 1253, 1275
TspGWI	ACGGA	1 cut(s)	358
TspRI	CASTG	1 cut(s)	1035
VpaK11BI	GGWCC	5 cut(s)	70, 151, 890, 926, 1053
XapI	RAATTY	3 cut(s)	221, 405, 1184
XceI	RCATGY	2 cut(s)	124, 991
XmaJI	CCTAGG	1 cut(s)	1349
XspI	CTAG	2 cut(s)	429, 1350
ZraI	GACGTC	1 cut(s)	910

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.