Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0004237

Physical Location & Seq

Genomic Coordinates Forward (+)

25687117 .. 25694916

Gene Structure 7800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G270800.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1464 bp

ATGACGTTATTGAGAAGTCCTAGTGGTCGTGACAATCAAGAGAGTGCTAAGAAACCTTCTTTTCCCTTGGCGGACCAGCTGCAAAAACGGAAGTCACCTTTTGGCTTCTATACTGATTCTGATATGTTGGTGTGGTTGAAAGGGCTAGCATTAGACCCTTGTGACCAGAAAGCATCCCCAGATTCAGCTCAACAATTATGGAAGCAGAGTCTTAAAGTGCGGAAACTATTGCTTCTTGGTAATGTCGTTTGTCCTCGGAGAAAACGAAAACTTCATCAGTTCCTAAACAGTAGTAAGTTCGCAGGTGCTTCTGGATTGGCTACAGAGAAATCTGATGTTCATACTGTAAAGAAAATGGGCAGAGTGCATTCTGTCTCATGTGTAACCAATACAAATGCCAACAGTGAAATTTTCGAACCACTGCTTCTCTGTAACTCACGCAGTTCTGGAAGTTTGTTGACTTTTGAAGATGAAGATCAGCATAAGCCAGGCTATACAGATTTGGCCATTATGGATGTGGAAAATATTGGTCCATATTGCAAGGATAATTCTGCCTCTCCTTTGATTGATACAGATGAATCAAACAATGGTTTGAACACATTGAGTCCAAAAAACTTGAATTTCTGTGATGCAACCAATGTGAATCTTAATGATACAGCTGAAAGCTCAGACTCTTCGAGTTTAGACGAGAATAGTTCAGAACTTGAATGTGCATTGAGGTCATTGGTTTCCAGTGATGATTATCTTCCAAGATCTATTCCTGTGAGAGAGATCGATGGCTCAGCTCACCATTCGGATCCATTGAGGTCAAAGGAGCAAAATTCGAAAGTTCGAGAAGCAGTGAAAATAATGTTTTCAGATGGTGGTGTTCTGAGGGCTGTTGTTCCCATTGGTCCTGGTTTTCAGGTGGAAGTCCCAGAATGGACGGGTCCAGTGGATAGGAAGAATCTTTATGGTAGTGATGGTGATTCGAAAGTGTCAAGGTGGTTGGGCAAACGAACGTGGCCCATTAAAGGAAAAAGTGCAGGAGCCGCTGTGAAAGAACTTGGTAAAGGGAGATCCGACTCCTGTTCTTGCGTCTCTCCAGGATCTGTTGGTTGTGTCAAACACCACATTCATGAAGCAAGACTCTGTTTGCAATATGAAATTGGTCCTGCCTTTCGGAGTTGGAAGTTTGATGAAATGGGAGAATTTGTCTCAGCGTCATGGACTTCAAGTGAACAGCGGAGCTTTGAATCTCTTGTCAGAATGAATCCACTATCAAATGAAGCAAGTTTTTGGAGGACTGCCTTTAAGCGTTTCCCTTCCAAGTGCCGGAAGAGCATTTTGAATTACTACTATAATGTGTTCATCCCTAGACGTATGAGCATCCAGACTAGATCCTCTCTTGATGAAATTGACAGTGATGATGACCAGACAAAGGAAGAACAGCTAACTGGATGTAAATCTAGAAGGGTAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELM2

Protein Analysis

488

Amino Acids

54.17

Weight (kDa)

8.31

Isoelectric Point (pI)

55.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004237)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12001 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700
malus_domestica	MD04G1147000.v1.1 MD12G1160300.v1.1
prunus_persica	Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1
pyrus_communis	pycom04g13280 pycom12g15210
rosa_chinensis	RchiOBHm_Chr3g0463841 RchiOBHm_Chr3g0470651
rosa_laevigata	RLG00000024250 RLG00000024752
rosa_multiflora	Rmu_co8471153.1_g000001 Rmu_sc0004796.1_g000007
rosa_roxburghii	Rroxscaffold_6G00410630
rosa_rugosa	Rorug03G0068200 Rorug03G0068300 Rorug03G0111300 Rorug03G0111400
rosa_samantha	Rh3AG125500 Rh3AG161000 Rh3BG129600 Rh3BG185600 Rh3CG132100 Rh3CG175900 Rh3DG189200
rosa_wichuraiana	Rw3G010590 Rw3G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	293
Acc36I	ACCTGC	1 cut(s)	293
AciI	CCGC	4 cut(s)	71, 220, 1032, 1225
AclWI	GGATC	5 cut(s)	791, 804, 1053, 1096, 1374
AcoI	YGGCCR	1 cut(s)	504
AcsI	RAATTY	4 cut(s)	408, 619, 820, 1190
AfiI	CCNNNNNNNGG	3 cut(s)	1013, 1314, 1420
AgsI	TTSAA	8 cut(s)	139, 467, 595, 619, 707, 1215, 1235, 1330
AjnI	CCWGG	3 cut(s)	487, 895, 1084
AluBI	AGCT	8 cut(s)	79, 188, 659, 666, 785, 1230, 1432, 1460
AluI	AGCT	8 cut(s)	79, 188, 659, 666, 785, 1230, 1432, 1460
Alw26I	GTCTC	3 cut(s)	379, 1084, 1201
AlwI	GGATC	5 cut(s)	791, 804, 1053, 1096, 1374
AlwNI	CAGNNNCTG	1 cut(s)	1091
AoxI	GGCC	2 cut(s)	504, 1004
ApeKI	GCWGC	1 cut(s)	79
ApoI	RAATTY	4 cut(s)	408, 619, 820, 1190
AspS9I	GGNCC	6 cut(s)	73, 530, 893, 929, 1005, 1151
AsuHPI	GGTGA	3 cut(s)	87, 779, 977
AsuII	TTCGAA	3 cut(s)	414, 824, 971
AsuNHI	GCTAGC	1 cut(s)	145
AvaII	GGWCC	5 cut(s)	73, 530, 893, 929, 1151
BalI	TGGCCA	1 cut(s)	506
BamHI	GGATCC	1 cut(s)	796
BbvI	GCAGC	1 cut(s)	66
BccI	CCATC	3 cut(s)	770, 854, 956
BciT130I	CCWGG	3 cut(s)	489, 897, 1086
BcoDI	GTCTC	3 cut(s)	379, 1084, 1201
BfaI	CTAG	5 cut(s)	21, 146, 1356, 1377, 1449
BfmI	CTRYAG	1 cut(s)	321
BfuAI	ACCTGC	1 cut(s)	293
BglII	AGATCT	1 cut(s)	752
BisI	GCNGC	2 cut(s)	80, 1032
BlpI	GCTNAGC	1 cut(s)	781
BlsI	GCNGC	2 cut(s)	81, 1033
Bme1390I	CCNGG	3 cut(s)	489, 897, 1086
Bme18I	GGWCC	5 cut(s)	73, 530, 893, 929, 1151
BmgT120I	GGNCC	6 cut(s)	73, 530, 893, 929, 1005, 1151
BmiI	GGNNCC	3 cut(s)	798, 930, 1030
BmrFI	CCNGG	3 cut(s)	489, 897, 1086
BmsI	GCATC	3 cut(s)	182, 619, 1377
BmtI	GCTAGC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	1068
Bpu1102I	GCTNAGC	1 cut(s)	781
Bpu14I	TTCGAA	3 cut(s)	414, 824, 971
Bsa29I	ATCGAT	1 cut(s)	774
BsaBI	GATNNNNATC	3 cut(s)	474, 741, 1444
BsaJI	CCNNGG	2 cut(s)	66, 254
BsaXI	ACNNNNNCTCC	4 cut(s)	1020, 1050, 1179, 1209
Bsc4I	CCNNNNNNNGG	3 cut(s)	1013, 1314, 1420
Bse1I	ACTGG	3 cut(s)	732, 932, 1441
Bse8I	GATNNNNATC	3 cut(s)	474, 741, 1444
BseBI	CCWGG	3 cut(s)	489, 897, 1086
BseCI	ATCGAT	1 cut(s)	774
BseDI	CCNNGG	2 cut(s)	66, 254
BseGI	GGATG	5 cut(s)	173, 520, 1350, 1368, 1445
BseJI	GATNNNNATC	3 cut(s)	474, 741, 1444
BseLI	CCNNNNNNNGG	3 cut(s)	1013, 1314, 1420
BseMII	CTCAG	4 cut(s)	681, 795, 863, 1212
BseNI	ACTGG	3 cut(s)	732, 932, 1441
BseXI	GCAGC	1 cut(s)	66
BsgI	GTGCAG	1 cut(s)	1044
BshFI	GGCC	2 cut(s)	506, 1006
BshVI	ATCGAT	1 cut(s)	774
BsiSI	CCGG	1 cut(s)	1315
BslFI	GGGAC	1 cut(s)	899
BslI	CCNNNNNNNGG	3 cut(s)	1013, 1314, 1420
BsmAI	GTCTC	3 cut(s)	379, 1084, 1201
BsmBI	CGTCTC	1 cut(s)	1084
BsmFI	GGGAC	1 cut(s)	899
BsmI	GAATGC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	506, 1006
Bsp119I	TTCGAA	3 cut(s)	414, 824, 971
Bsp143I	GATC	7 cut(s)	475, 752, 771, 796, 1058, 1088, 1379
Bsp1720I	GCTNAGC	1 cut(s)	781
BspACI	CCGC	4 cut(s)	71, 220, 1032, 1225
BspANI	GGCC	2 cut(s)	506, 1006
BspCNI	CTCAG	4 cut(s)	680, 794, 864, 1211
BspDI	ATCGAT	1 cut(s)	774
BspHI	TCATGA	1 cut(s)	1117
BspLI	GGNNCC	3 cut(s)	798, 930, 1030
BspMI	ACCTGC	1 cut(s)	293
BspOI	GCTAGC	1 cut(s)	149
BspPI	GGATC	5 cut(s)	791, 804, 1053, 1096, 1374
BspQI	GCTCTTC	1 cut(s)	1313
BspT104I	TTCGAA	3 cut(s)	414, 824, 971
BsrI	ACTGG	3 cut(s)	732, 932, 1441
BssECI	CCNNGG	2 cut(s)	66, 254
BssMI	GATC	7 cut(s)	475, 752, 771, 796, 1058, 1088, 1379
BssT1I	CCWWGG	1 cut(s)	66
Bst2UI	CCWGG	3 cut(s)	489, 897, 1086
Bst4CI	ACNGT	4 cut(s)	290, 346, 404, 1403
Bst6I	CTCTTC	2 cut(s)	679, 1313
BstBI	TTCGAA	3 cut(s)	414, 824, 971
BstC8I	GCNNGC	1 cut(s)	147
BstDEI	CTNAG	6 cut(s)	48, 667, 781, 872, 1198, 1461
BstF5I	GGATG	5 cut(s)	173, 520, 1350, 1368, 1445
BstKTI	GATC	7 cut(s)	478, 755, 774, 799, 1061, 1091, 1382
BstMAI	GTCTC	3 cut(s)	379, 1084, 1201
BstMBI	GATC	7 cut(s)	475, 752, 771, 796, 1058, 1088, 1379
BstMWI	GCNNNNNNNGC	2 cut(s)	1031, 1320
BstNI	CCWGG	3 cut(s)	489, 897, 1086
BstSCI	CCNGG	3 cut(s)	487, 895, 1084
BstSFI	CTRYAG	1 cut(s)	321
BstV1I	GCAGC	1 cut(s)	66
BstX2I	RGATCY	5 cut(s)	752, 796, 1058, 1088, 1379
BstYI	RGATCY	5 cut(s)	752, 796, 1058, 1088, 1379
Bsu15I	ATCGAT	1 cut(s)	774
BsuRI	GGCC	2 cut(s)	506, 1006
BsuTUI	ATCGAT	1 cut(s)	774
BtsCI	GGATG	5 cut(s)	173, 520, 1350, 1368, 1445
BtsI	GCAGTG	2 cut(s)	419, 846
BtsIMutI	CAGTG	6 cut(s)	409, 419, 739, 846, 939, 1408
BveI	ACCTGC	1 cut(s)	293
Cac8I	GCNNGC	1 cut(s)	147
CaiI	CAGNNNCTG	1 cut(s)	1091
CciI	TCATGA	1 cut(s)	1117
Cfr13I	GGNCC	6 cut(s)	73, 530, 893, 929, 1005, 1151
ClaI	ATCGAT	1 cut(s)	774
CseI	GACGC	2 cut(s)	1066, 1191
CviAII	CATG	3 cut(s)	378, 1118, 1206
DdeI	CTNAG	6 cut(s)	48, 667, 781, 872, 1198, 1461
DpnI	GATC	7 cut(s)	477, 754, 773, 798, 1060, 1090, 1381
DpnII	GATC	7 cut(s)	475, 752, 771, 796, 1058, 1088, 1379
EaeI	YGGCCR	1 cut(s)	504
Eam1104I	CTCTTC	2 cut(s)	679, 1313
EarI	CTCTTC	2 cut(s)	679, 1313
EciI	GGCGGA	1 cut(s)	86
Eco130I	CCWWGG	1 cut(s)	66
Eco47I	GGWCC	5 cut(s)	73, 530, 893, 929, 1151
EcoRII	CCWGG	3 cut(s)	487, 895, 1084
EcoT14I	CCWWGG	1 cut(s)	66
ErhI	CCWWGG	1 cut(s)	66
Esp3I	CGTCTC	1 cut(s)	1084
FaeI	CATG	3 cut(s)	381, 1121, 1209
FalI	AAGNNNNNCTT	1 cut(s)	1444
FaqI	GGGAC	1 cut(s)	899
FatI	CATG	3 cut(s)	377, 1117, 1205
Fnu4HI	GCNGC	2 cut(s)	80, 1032
FokI	GGATG	5 cut(s)	160, 527, 1337, 1355, 1452
Fsp4HI	GCNGC	2 cut(s)	80, 1032
FspBI	CTAG	5 cut(s)	21, 146, 1356, 1377, 1449
GluI	GCNGC	2 cut(s)	80, 1032
GsuI	CTGGAG	1 cut(s)	1068
HaeIII	GGCC	2 cut(s)	506, 1006
HapII	CCGG	1 cut(s)	1315
HgaI	GACGC	2 cut(s)	1066, 1191
Hin1II	CATG	3 cut(s)	381, 1121, 1209
HincII	GTYRAC	1 cut(s)	459
HindII	GTYRAC	1 cut(s)	459
HpaII	CCGG	1 cut(s)	1315
HphI	GGTGA	3 cut(s)	87, 779, 977
Hpy166II	GTNNAC	2 cut(s)	459, 1220
Hpy188III	TCNNGA	9 cut(s)	29, 38, 312, 447, 833, 1118, 1372, 1388, 1449
Hpy8I	GTNNAC	2 cut(s)	459, 1220
HpyAV	CCTTC	3 cut(s)	66, 1314, 1446
HpyCH4III	ACNGT	4 cut(s)	290, 346, 404, 1403
HpyCH4IV	ACGT	3 cut(s)	5, 1001, 1360
HpyCH4V	TGCA	7 cut(s)	82, 367, 540, 632, 713, 1025, 1138
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1031, 1320
HpyF3I	CTNAG	6 cut(s)	48, 667, 781, 872, 1198, 1461
HpySE526I	ACGT	3 cut(s)	5, 1001, 1360
Hsp92II	CATG	3 cut(s)	381, 1121, 1209
Kzo9I	GATC	7 cut(s)	475, 752, 771, 796, 1058, 1088, 1379
LguI	GCTCTTC	1 cut(s)	1313
LmnI	GCTCC	3 cut(s)	814, 1028, 1227
Lsp1109I	GCAGC	1 cut(s)	66
LweI	GCATC	3 cut(s)	182, 619, 1377
MaeI	CTAG	5 cut(s)	21, 146, 1356, 1377, 1449
MaeII	ACGT	3 cut(s)	5, 1001, 1360
MaeIII	GTNAC	5 cut(s)	29, 93, 161, 382, 431
MalI	GATC	7 cut(s)	477, 754, 773, 798, 1060, 1090, 1381
MboI	GATC	7 cut(s)	475, 752, 771, 796, 1058, 1088, 1379
MboII	GAAGA	7 cut(s)	479, 485, 666, 737, 955, 1330, 1436
MflI	RGATCY	5 cut(s)	752, 796, 1058, 1088, 1379
MlsI	TGGCCA	1 cut(s)	506
MluCI	AATT	9 cut(s)	194, 408, 547, 619, 820, 1146, 1190, 1330, 1395
MluNI	TGGCCA	1 cut(s)	506
MlyI	GAGTC	5 cut(s)	217, 613, 665, 1058, 1122
MmeI	TCCRAC	2 cut(s)	1086, 1148
MnlI	CCTC	7 cut(s)	264, 565, 711, 798, 867, 1275, 1393
Mox20I	TGGCCA	1 cut(s)	506
MscI	TGGCCA	1 cut(s)	506
MseI	TTAA	4 cut(s)	213, 648, 1011, 1293
MslI	CAYNNNNRTG	1 cut(s)	1116
Msp20I	TGGCCA	1 cut(s)	506
MspA1I	CMGCKG	4 cut(s)	79, 659, 1034, 1225
MspI	CCGG	1 cut(s)	1315
MspR9I	CCNGG	3 cut(s)	489, 897, 1086
Mva1269I	GAATGC	1 cut(s)	367
MvaI	CCWGG	3 cut(s)	489, 897, 1086
MwoI	GCNNNNNNNGC	2 cut(s)	1031, 1320
NdeII	GATC	7 cut(s)	475, 752, 771, 796, 1058, 1088, 1379
NheI	GCTAGC	1 cut(s)	145
NlaIII	CATG	3 cut(s)	381, 1121, 1209
NlaIV	GGNNCC	3 cut(s)	798, 930, 1030
NmuCI	GTSAC	3 cut(s)	29, 93, 161
NspV	TTCGAA	3 cut(s)	414, 824, 971
PagI	TCATGA	1 cut(s)	1117
PaqCI	CACCTGC	1 cut(s)	293
PciSI	GCTCTTC	1 cut(s)	1313
PcsI	WCGNNNNNNNCGW	1 cut(s)	262
PctI	GAATGC	1 cut(s)	367
PfeI	GAWTC	8 cut(s)	116, 182, 578, 643, 946, 968, 1235, 1252
PfoI	TCCNGGA	1 cut(s)	1084
PkrI	GCNGC	2 cut(s)	81, 1033
PleI	GAGTC	5 cut(s)	216, 612, 665, 1058, 1122
PpsI	GAGTC	5 cut(s)	216, 612, 665, 1058, 1122
Psp6I	CCWGG	3 cut(s)	487, 895, 1084
PspGI	CCWGG	3 cut(s)	487, 895, 1084
PspN4I	GGNNCC	3 cut(s)	798, 930, 1030
PspPI	GGNCC	6 cut(s)	73, 530, 893, 929, 1005, 1151
PstNI	CAGNNNCTG	1 cut(s)	1091
PsuI	RGATCY	5 cut(s)	752, 796, 1058, 1088, 1379
PvuII	CAGCTG	2 cut(s)	79, 659
RseI	CAYNNNNRTG	1 cut(s)	1116
SapI	GCTCTTC	1 cut(s)	1313
SaqAI	TTAA	4 cut(s)	213, 648, 1011, 1293
SatI	GCNGC	2 cut(s)	80, 1032
Sau3AI	GATC	7 cut(s)	475, 752, 771, 796, 1058, 1088, 1379
Sau96I	GGNCC	6 cut(s)	73, 530, 893, 929, 1005, 1151
SchI	GAGTC	5 cut(s)	217, 613, 665, 1058, 1122
ScrFI	CCNGG	3 cut(s)	489, 897, 1086
SfaNI	GCATC	3 cut(s)	182, 619, 1377
SfcI	CTRYAG	1 cut(s)	321
SfuI	TTCGAA	3 cut(s)	414, 824, 971
SinI	GGWCC	5 cut(s)	73, 530, 893, 929, 1151
SmiMI	CAYNNNNRTG	1 cut(s)	1116
Sse9I	AATT	9 cut(s)	194, 408, 547, 619, 820, 1146, 1190, 1330, 1395
SsiI	CCGC	4 cut(s)	71, 220, 1032, 1225
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	5 cut(s)	21, 146, 1356, 1377, 1449
StyD4I	CCNGG	3 cut(s)	487, 895, 1084
StyI	CCWWGG	1 cut(s)	66
TaaI	ACNGT	4 cut(s)	290, 346, 404, 1403
TaiI	ACGT	3 cut(s)	8, 1004, 1363
TaqI	TCGA	6 cut(s)	414, 677, 774, 824, 832, 971
TasI	AATT	9 cut(s)	194, 408, 547, 619, 820, 1146, 1190, 1330, 1395
TauI	GCSGC	1 cut(s)	1034
TfiI	GAWTC	8 cut(s)	116, 182, 578, 643, 946, 968, 1235, 1252
Tru1I	TTAA	4 cut(s)	213, 648, 1011, 1293
Tru9I	TTAA	4 cut(s)	213, 648, 1011, 1293
TscAI	CASTG	6 cut(s)	409, 426, 739, 846, 939, 1408
TseFI	GTSAC	3 cut(s)	29, 93, 161
TseI	GCWGC	1 cut(s)	79
Tsp45I	GTSAC	3 cut(s)	29, 93, 161
TspGWI	ACGGA	1 cut(s)	103
TspRI	CASTG	6 cut(s)	409, 426, 739, 846, 939, 1408
VpaK11BI	GGWCC	5 cut(s)	73, 530, 893, 929, 1151
XapI	RAATTY	4 cut(s)	408, 619, 820, 1190
XbaI	TCTAGA	1 cut(s)	1448
XcmI	CCANNNNNNNNNTGG	1 cut(s)	514
XspI	CTAG	5 cut(s)	21, 146, 1356, 1377, 1449

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.