Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0004237

Physical Location & Seq

Genomic Coordinates Forward (+)

16237984 .. 16240148

Gene Structure 2165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g13280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1401 bp

ATGGCTCCTTCAAGAAGTCGTGGTCATGACAATCAAGAGAGTGCTAAGAAAGCTTCTTTTCCAATGGGGGACCAGCTGCAAAAATGGAAATCACCTTTTGGCCTCTATGCTGATTCTGACATGTTGGTGTGGTTGAAAGGACTTGCACTGGACCCTTGTGACCAGAAAGCATCTCCTGATTCAGCTCGACAACTATGGAATCAGAGTCTTAAAGTGCGGAAATTCTTGCTTCTTGGTAATGCCGAATCTCCTCGGTTCCTAAAAGTTAGTAAGTTAGCAGAAGTTTCTCGATTGCATCCTGAGAAATCTGATGTCCATAGTGTCAAAAGATTGAGTACAGGGCATTCCGTCTCATGCTTAACCCATACAAATGCCAACAATGGAATTTCCAAACCACAGCTTCTCTCTAGCTCTCACGGTTCCGGAAGTTTGTTAACATCTGAAGATGAATATCAAGGGAAGCCAGGTTCAACATATTTGACCTCTATGGATATGGAAAACTATGGTGCATCTTGCAAGGATAATTCTGCCTCTCCTTTATTTGATACAGATGAATCGAACAATGGTCTGAACACATTGAATCCCAAAAACTTGAAATTCTCTGATGCAACTTTTGCGAATGTCAATGATACAGCCAATAGCTCAGATTCTCCAAGTTTAGAAGAGAATAGTACAGAACTTGAACGTGCGTTGAGGTGTATGATTTTTAGTGATGATTATCTTCCAAGATGTATTCCTGTGAGAGATTTTGATGGTTCAGTTCACCATTCAGATTCATCCAGGTCAATGGAGCAAAATCTGAAACTTCGAGAAGCGGTGAGATTACTATTTACAGATGGTAGTCTTCCGATATCTGTTGTTCCGACTGGTCCTTGTTTTCAGGCGGACATCCCAGAATGGACAGGTGCAGTAAATAGGAAAACTCTTTATGGTGGTGGTGATTCAGCAGCGTTAAAGTGGTTGGGCACGCGAACGTGGCCCATTAAAGGAAAAAGTGCAGGAACCACAGTGAAAGCACTTGGGAAAGGGAGATCCAACTCTTGTTCTTGCATATCTCCAGGATCTGTTGGTTGTGTTAAACTCCACATTCATGAACAAAGACTCCTCTTGCAATTCGAACTTGGTCCTGCCTTCCGGAGTTGGAAGTTTGACGAAATGGGAGAATTTGTCTCAAAGTCATGGACATCAACTGAACAGCAGAACTTTGAATCTCTTGTGAAAGTGAATCCACTATCAAATGAAGCAAGTTTTTGGAAGATCGCCTATAAGCGTTTCCCTTCCAAGTCTCGGAAGAGCATTTTGAATTACTACTATAACGTGTACATCCCGAGGCGTATGAGCCTCCAGACTAGGACCTCCCGTGATAAAATTGACAGCGACGATGATGAGGCGGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELM2

Protein Analysis

467

Amino Acids

51.77

Weight (kDa)

8.25

Isoelectric Point (pI)

43.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004237)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12001 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700
malus_domestica	MD04G1147000.v1.1 MD12G1160300.v1.1
prunus_persica	Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1
pyrus_communis	pycom04g13280 pycom12g15210
rosa_chinensis	RchiOBHm_Chr3g0463841 RchiOBHm_Chr3g0470651
rosa_laevigata	RLG00000024250 RLG00000024752
rosa_multiflora	Rmu_co8471153.1_g000001 Rmu_sc0004796.1_g000007
rosa_roxburghii	Rroxscaffold_6G00410630
rosa_rugosa	Rorug03G0068200 Rorug03G0068300 Rorug03G0111300 Rorug03G0111400
rosa_samantha	Rh3AG125500 Rh3AG161000 Rh3BG129600 Rh3BG185600 Rh3CG132100 Rh3CG175900 Rh3DG189200
rosa_wichuraiana	Rw3G010590 Rw3G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	970
AccIII	TCCGGA	2 cut(s)	422, 1134
AciI	CCGC	4 cut(s)	217, 815, 884, 1391
AclWI	GGATC	2 cut(s)	1026, 1069
AcsI	RAATTY	4 cut(s)	221, 384, 596, 1163
AcuI	CTGAAG	1 cut(s)	462
AfaI	GTAC	3 cut(s)	337, 673, 1322
AfiI	CCNNNNNNNGG	2 cut(s)	986, 1287
AflIII	ACRYGT	2 cut(s)	120, 1317
AgsI	TTSAA	8 cut(s)	12, 136, 471, 580, 595, 683, 1208, 1303
AjnI	CCWGG	3 cut(s)	463, 779, 1057
AloI	GAACNNNNNNTCC	4 cut(s)	451, 483, 1086, 1118
AluBI	AGCT	6 cut(s)	53, 76, 185, 400, 411, 642
AluI	AGCT	6 cut(s)	53, 76, 185, 400, 411, 642
Alw26I	GTCTC	3 cut(s)	355, 1174, 1290
AlwI	GGATC	2 cut(s)	1026, 1069
AlwNI	CAGNNNCTG	1 cut(s)	1064
Ama87I	CYCGRG	1 cut(s)	1327
Aor13HI	TCCGGA	2 cut(s)	422, 1134
AoxI	GGCC	2 cut(s)	100, 977
ApeKI	GCWGC	2 cut(s)	76, 947
ApoI	RAATTY	4 cut(s)	221, 384, 596, 1163
AspS9I	GGNCC	6 cut(s)	70, 151, 869, 978, 1124, 1353
AsuHPI	GGTGA	4 cut(s)	84, 755, 829, 950
AsuII	TTCGAA	1 cut(s)	1116
AvaI	CYCGRG	1 cut(s)	1327
AvaII	GGWCC	5 cut(s)	70, 151, 869, 1124, 1353
BaeGI	GKGCMC	1 cut(s)	968
BbsI	GAAGAC	1 cut(s)	836
BbvI	GCAGC	2 cut(s)	63, 959
BccI	CCATC	2 cut(s)	746, 830
BciT130I	CCWGG	3 cut(s)	465, 781, 1059
BcoDI	GTCTC	3 cut(s)	355, 1174, 1290
BfaI	CTAG	2 cut(s)	408, 1350
BisI	GCNGC	2 cut(s)	77, 948
BlsI	GCNGC	2 cut(s)	78, 949
Bme1390I	CCNGG	3 cut(s)	465, 781, 1059
Bme18I	GGWCC	5 cut(s)	70, 151, 869, 1124, 1353
BmeT110I	CYCGRG	1 cut(s)	1327
BmgT120I	GGNCC	6 cut(s)	70, 151, 869, 978, 1124, 1353
BmiI	GGNNCC	6 cut(s)	6, 71, 153, 257, 421, 1003
BmrFI	CCNGG	3 cut(s)	465, 781, 1059
BmsI	GCATC	4 cut(s)	179, 304, 518, 595
BpiI	GAAGAC	1 cut(s)	836
BpmI	CTGGAG	2 cut(s)	1041, 1328
Bpu14I	TTCGAA	1 cut(s)	1116
BsaBI	GATNNNNATC	2 cut(s)	450, 717
BsaJI	CCNNGG	2 cut(s)	251, 1328
BsaWI	WCCGGW	2 cut(s)	422, 1134
BsaXI	ACNNNNNCTCC	4 cut(s)	1086, 1116, 1152, 1182
Bsc4I	CCNNNNNNNGG	2 cut(s)	986, 1287
Bse1I	ACTGG	2 cut(s)	153, 871
Bse8I	GATNNNNATC	2 cut(s)	450, 717
BseAI	TCCGGA	2 cut(s)	422, 1134
BseBI	CCWGG	3 cut(s)	465, 781, 1059
BseDI	CCNNGG	2 cut(s)	251, 1328
BseGI	GGATG	4 cut(s)	295, 776, 888, 1323
BseJI	GATNNNNATC	2 cut(s)	450, 717
BseLI	CCNNNNNNNGG	2 cut(s)	986, 1287
BseMII	CTCAG	2 cut(s)	291, 657
BseNI	ACTGG	2 cut(s)	153, 871
BseRI	GAGGAG	2 cut(s)	240, 1094
BseSI	GKGCMC	1 cut(s)	968
BseXI	GCAGC	2 cut(s)	63, 959
BsgI	GTGCAG	2 cut(s)	927, 1017
Bsh1236I	CGCG	1 cut(s)	970
BshFI	GGCC	2 cut(s)	102, 979
BsiHKCI	CYCGRG	1 cut(s)	1327
BsiSI	CCGG	2 cut(s)	423, 1135
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	2 cut(s)	986, 1287
BsmAI	GTCTC	3 cut(s)	355, 1174, 1290
BsmBI	CGTCTC	1 cut(s)	355
BsmFI	GGGAC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	343
BsnI	GGCC	2 cut(s)	102, 979
BsoBI	CYCGRG	1 cut(s)	1327
Bsp119I	TTCGAA	1 cut(s)	1116
Bsp1286I	GDGCHC	1 cut(s)	968
Bsp13I	TCCGGA	2 cut(s)	422, 1134
Bsp1407I	TGTACA	1 cut(s)	1320
Bsp143I	GATC	3 cut(s)	1031, 1061, 1257
BspACI	CCGC	4 cut(s)	217, 815, 884, 1391
BspANI	GGCC	2 cut(s)	102, 979
BspCNI	CTCAG	2 cut(s)	292, 656
BspEI	TCCGGA	2 cut(s)	422, 1134
BspFNI	CGCG	1 cut(s)	970
BspHI	TCATGA	2 cut(s)	25, 1090
BspLI	GGNNCC	6 cut(s)	6, 71, 153, 257, 421, 1003
BspPI	GGATC	2 cut(s)	1026, 1069
BspQI	GCTCTTC	1 cut(s)	1286
BspT104I	TTCGAA	1 cut(s)	1116
BsrGI	TGTACA	1 cut(s)	1320
BsrI	ACTGG	2 cut(s)	153, 871
BssECI	CCNNGG	2 cut(s)	251, 1328
BssMI	GATC	3 cut(s)	1031, 1061, 1257
Bst2UI	CCWGG	3 cut(s)	465, 781, 1059
Bst4CI	ACNGT	2 cut(s)	419, 1009
Bst6I	CTCTTC	3 cut(s)	657, 1286, 1389
BstAPI	GCANNNNNTGC	1 cut(s)	614
BstAUI	TGTACA	1 cut(s)	1320
BstBI	TTCGAA	1 cut(s)	1116
BstC8I	GCNNGC	1 cut(s)	968
BstDEI	CTNAG	3 cut(s)	45, 300, 643
BstF5I	GGATG	4 cut(s)	295, 776, 888, 1323
BstFNI	CGCG	1 cut(s)	970
BstKTI	GATC	3 cut(s)	1034, 1064, 1260
BstMAI	GTCTC	3 cut(s)	355, 1174, 1290
BstMBI	GATC	3 cut(s)	1031, 1061, 1257
BstMWI	GCNNNNNNNGC	3 cut(s)	50, 614, 976
BstNI	CCWGG	3 cut(s)	465, 781, 1059
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	3 cut(s)	463, 779, 1057
BstSLI	GKGCMC	1 cut(s)	968
BstUI	CGCG	1 cut(s)	970
BstV1I	GCAGC	2 cut(s)	63, 959
BstV2I	GAAGAC	1 cut(s)	836
BstX2I	RGATCY	2 cut(s)	1031, 1061
BstXI	CCANNNNNNTGG	1 cut(s)	787
BstYI	RGATCY	2 cut(s)	1031, 1061
BsuRI	GGCC	2 cut(s)	102, 979
BtsCI	GGATG	4 cut(s)	295, 776, 888, 1323
BtsIMutI	CAGTG	2 cut(s)	146, 1014
Cac8I	GCNNGC	1 cut(s)	968
CaiI	CAGNNNCTG	1 cut(s)	1064
CciI	TCATGA	2 cut(s)	25, 1090
Cfr13I	GGNCC	6 cut(s)	70, 151, 869, 978, 1124, 1353
Csp6I	GTAC	3 cut(s)	336, 672, 1321
CviAII	CATG	5 cut(s)	26, 121, 354, 1091, 1179
CviQI	GTAC	3 cut(s)	336, 672, 1321
DdeI	CTNAG	3 cut(s)	45, 300, 643
DpnI	GATC	3 cut(s)	1033, 1063, 1259
DpnII	GATC	3 cut(s)	1031, 1061, 1257
Eam1104I	CTCTTC	3 cut(s)	657, 1286, 1389
EarI	CTCTTC	3 cut(s)	657, 1286, 1389
EciI	GGCGGA	1 cut(s)	899
Eco32I	GATATC	1 cut(s)	852
Eco47I	GGWCC	5 cut(s)	70, 151, 869, 1124, 1353
Eco57I	CTGAAG	1 cut(s)	462
Eco88I	CYCGRG	1 cut(s)	1327
EcoO109I	RGGNCCY	1 cut(s)	1353
EcoRII	CCWGG	3 cut(s)	463, 779, 1057
EcoRV	GATATC	1 cut(s)	852
Esp3I	CGTCTC	1 cut(s)	355
FaeI	CATG	5 cut(s)	29, 124, 357, 1094, 1182
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	5 cut(s)	25, 120, 353, 1090, 1178
Fnu4HI	GCNGC	2 cut(s)	77, 948
FokI	GGATG	4 cut(s)	282, 763, 875, 1310
Fsp4HI	GCNGC	2 cut(s)	77, 948
FspBI	CTAG	2 cut(s)	408, 1350
GluI	GCNGC	2 cut(s)	77, 948
GsuI	CTGGAG	2 cut(s)	1041, 1328
HaeIII	GGCC	2 cut(s)	102, 979
HapII	CCGG	2 cut(s)	423, 1135
Hin1II	CATG	5 cut(s)	29, 124, 357, 1094, 1182
HincII	GTYRAC	1 cut(s)	435
HindII	GTYRAC	1 cut(s)	435
HindIII	AAGCTT	1 cut(s)	51
HpaI	GTTAAC	1 cut(s)	435
HpaII	CCGG	2 cut(s)	423, 1135
HphI	GGTGA	4 cut(s)	84, 755, 829, 950
Hpy166II	GTNNAC	3 cut(s)	435, 763, 1321
Hpy8I	GTNNAC	3 cut(s)	435, 763, 1321
Hpy99I	CGWCG	1 cut(s)	1382
HpyAV	CCTTC	3 cut(s)	18, 1141, 1287
HpyCH4III	ACNGT	2 cut(s)	419, 1009
HpyCH4IV	ACGT	3 cut(s)	685, 974, 1317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	50, 614, 976
HpyF3I	CTNAG	3 cut(s)	45, 300, 643
HpySE526I	ACGT	3 cut(s)	685, 974, 1317
Hsp92II	CATG	5 cut(s)	29, 124, 357, 1094, 1182
Kpn2I	TCCGGA	2 cut(s)	422, 1134
KspAI	GTTAAC	1 cut(s)	435
Kzo9I	GATC	3 cut(s)	1031, 1061, 1257
LguI	GCTCTTC	1 cut(s)	1286
LmnI	GCTCC	2 cut(s)	10, 790
Lsp1109I	GCAGC	2 cut(s)	63, 959
LweI	GCATC	4 cut(s)	179, 304, 518, 595
MaeI	CTAG	2 cut(s)	408, 1350
MaeII	ACGT	3 cut(s)	685, 974, 1317
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	3 cut(s)	1033, 1063, 1259
MboI	GATC	3 cut(s)	1031, 1061, 1257
MboII	GAAGA	6 cut(s)	455, 674, 713, 836, 1267, 1303
MflI	RGATCY	2 cut(s)	1031, 1061
MhlI	GDGCHC	1 cut(s)	968
MluCI	AATT	8 cut(s)	221, 384, 523, 596, 1112, 1163, 1303, 1368
MlyI	GAGTC	2 cut(s)	214, 1095
MmeI	TCCRAC	3 cut(s)	887, 1059, 1121
MroI	TCCGGA	2 cut(s)	422, 1134
MseI	TTAA	6 cut(s)	210, 359, 434, 953, 984, 1077
MslI	CAYNNNNRTG	3 cut(s)	125, 369, 1089
MspA1I	CMGCKG	1 cut(s)	76
MspI	CCGG	2 cut(s)	423, 1135
MspR9I	CCNGG	3 cut(s)	465, 781, 1059
Mva1269I	GAATGC	1 cut(s)	343
MvaI	CCWGG	3 cut(s)	465, 781, 1059
MvnI	CGCG	1 cut(s)	970
MwoI	GCNNNNNNNGC	3 cut(s)	50, 614, 976
NdeII	GATC	3 cut(s)	1031, 1061, 1257
NlaIII	CATG	5 cut(s)	29, 124, 357, 1094, 1182
NlaIV	GGNNCC	6 cut(s)	6, 71, 153, 257, 421, 1003
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	1 cut(s)	124
NspV	TTCGAA	1 cut(s)	1116
PagI	TCATGA	2 cut(s)	25, 1090
PciI	ACATGT	1 cut(s)	120
PciSI	GCTCTTC	1 cut(s)	1286
PctI	GAATGC	1 cut(s)	343
PfoI	TCCNGGA	1 cut(s)	1057
PkrI	GCNGC	2 cut(s)	78, 949
PleI	GAGTC	2 cut(s)	213, 1095
PpsI	GAGTC	2 cut(s)	213, 1095
PpuMI	RGGWCCY	1 cut(s)	1353
PscI	ACATGT	1 cut(s)	120
Psp5II	RGGWCCY	1 cut(s)	1353
Psp6I	CCWGG	3 cut(s)	463, 779, 1057
PspGI	CCWGG	3 cut(s)	463, 779, 1057
PspN4I	GGNNCC	6 cut(s)	6, 71, 153, 257, 421, 1003
PspPI	GGNCC	6 cut(s)	70, 151, 869, 978, 1124, 1353
PspPPI	RGGWCCY	1 cut(s)	1353
PstNI	CAGNNNCTG	1 cut(s)	1064
PsuI	RGATCY	2 cut(s)	1031, 1061
PvuII	CAGCTG	1 cut(s)	76
RsaI	GTAC	3 cut(s)	337, 673, 1322
RsaNI	GTAC	3 cut(s)	336, 672, 1321
RseI	CAYNNNNRTG	3 cut(s)	125, 369, 1089
SapI	GCTCTTC	1 cut(s)	1286
SaqAI	TTAA	6 cut(s)	210, 359, 434, 953, 984, 1077
SatI	GCNGC	2 cut(s)	77, 948
Sau3AI	GATC	3 cut(s)	1031, 1061, 1257
Sau96I	GGNCC	6 cut(s)	70, 151, 869, 978, 1124, 1353
SchI	GAGTC	2 cut(s)	214, 1095
ScrFI	CCNGG	3 cut(s)	465, 781, 1059
SduI	GDGCHC	1 cut(s)	968
SfaNI	GCATC	4 cut(s)	179, 304, 518, 595
SfuI	TTCGAA	1 cut(s)	1116
SinI	GGWCC	5 cut(s)	70, 151, 869, 1124, 1353
SmiMI	CAYNNNNRTG	3 cut(s)	125, 369, 1089
Sse9I	AATT	8 cut(s)	221, 384, 523, 596, 1112, 1163, 1303, 1368
SsiI	CCGC	4 cut(s)	217, 815, 884, 1391
SspMI	CTAG	2 cut(s)	408, 1350
StyD4I	CCNGG	3 cut(s)	463, 779, 1057
TaaI	ACNGT	2 cut(s)	419, 1009
TaiI	ACGT	3 cut(s)	688, 977, 1320
TaqI	TCGA	5 cut(s)	187, 289, 557, 808, 1116
TasI	AATT	8 cut(s)	221, 384, 523, 596, 1112, 1163, 1303, 1368
TatI	WGTACW	3 cut(s)	335, 671, 1320
Tru1I	TTAA	6 cut(s)	210, 359, 434, 953, 984, 1077
Tru9I	TTAA	6 cut(s)	210, 359, 434, 953, 984, 1077
TscAI	CASTG	2 cut(s)	153, 1014
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	76, 947
Tsp45I	GTSAC	1 cut(s)	158
TspDTI	ATGAA	6 cut(s)	462, 567, 765, 1079, 1107, 1254
TspGWI	ACGGA	1 cut(s)	337
TspRI	CASTG	2 cut(s)	153, 1014
VpaK11BI	GGWCC	5 cut(s)	70, 151, 869, 1124, 1353
XapI	RAATTY	4 cut(s)	221, 384, 596, 1163
XceI	RCATGY	1 cut(s)	124
XspI	CTAG	2 cut(s)	408, 1350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.