Rmu_sc0004796.1_g000007

AT-rich interactive domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004796.1
Physical Location & Seq
Forward (+)
41907 .. 44436
2530 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004796.1_g000007.1.cds

Sequence Viewer

Length: 1467 bp
atggttgattcaaactatggccatttgcagcagaaagcttctttgtctgttggagatcagctgcaagaaaggaattcgcctttggatatctatactgattctgatattttggtgtggttgaaaggacttgcaatggactctagtggtccaatagcatccccaggttcagctcgacaattacggaagcagagtcttgaagtaaggaaacttctgcttcatggtaataaaaactgtcctcggaggaagcgaaaacttgaccagttccttaaaggtagatactaccttggcgcttctggaatggcaactaggacatctgatgatcatcgagtcaagagaattcgtactggccattctgtcacatgcttaaccaacacacatgaaaacaatcaaatcttcaaaccacagcctgtctgtaactcaaacagttctggaagtttgttgacaattgaggatgaatataaactgaagccagcttatgatttgaccattctggatgatatgagaaaatatggtccatcctgcaaaatttatcctgcctcctccttaatggataccgatggatcaggccatggttggaccattgtagatgatatggaacaatatggtaactcctgcaaggagttttctacctctgccttaattgataaagatgagtcagcccatggttcaaacaagttgactccagaatactccaacctttgtaatgcaacctctaagaatgttaatgattcagtcgatagtttggattcttcaagtttagatgagtgtgattcagaactcgaaagagctttgaggttattgatttccagtgatgatgatcttccaagatctactccttcagctcactcttcagcttcactgaggtcgagcaatagaaattcaaaggctgcagaaatattgagattgctcttctcagatggtcagtactttcgaaagtctgttccaattgggcctggttttcaggctgaagttcctgagtggagaggtcctgtcaataggaaaaatcgttacgttggtaatgcttcaaagaagtggttgggcactctaatgtatcccatcaaacggttaaaaaatgcaggagctgatacaaaatcgattgggaaggggagacctgactcttgttcttgtgtctctcctggatctgctggttgtgtcaaacaccacatcgatgaagcgagactccgtttgcaagctgaaattggtcctgcattccggacttggaagtttgatgaaatgggagaatttgcctcgaagtcatggactttgaaagaacaaagtaccttcgaatctctagtgagaaagaatccgctatcaaatgaagcaaacttttggaagcttgcctttaatcgttttcctaataaatgcaggaaaagcgttgtgagttattacaataacgtgttcataactagacgcctgagcctccagactaggtcttctgttgatgaaattgatagtgatgatgactag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

488

Amino Acids

54.55

Weight (kDa)

8.86

Isoelectric Point (pI)

44.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 1212
AciI CCGC 1 cut(s) 1307
AclWI GGATC 2 cut(s) 568, 1147
AcoI YGGCCR 2 cut(s) 19, 346
AcsI RAATTY 5 cut(s) 73, 336, 525, 877, 1241
AcuI CTGAAG 4 cut(s) 485, 822, 834, 987
AcyI GRCGYC 1 cut(s) 1411
AfaI GTAC 3 cut(s) 343, 926, 1279
AfiI CCNNNNNNNGG 1 cut(s) 1062
AflIII ACRYGT 1 cut(s) 1395
AgsI TTSAA 9 cut(s) 12, 121, 197, 397, 669, 753, 882, 1026, 1267
AjnI CCWGG 3 cut(s) 160, 952, 1135
AjuI GAANNNNNNNTTGG 2 cut(s) 65, 97
Alw26I GTCTC 3 cut(s) 1102, 1135, 1171
AlwI GGATC 2 cut(s) 568, 1147
AlwNI CAGNNNCTG 1 cut(s) 1082
Aor13HI TCCGGA 1 cut(s) 1212
AoxI GGCC 4 cut(s) 19, 346, 565, 950
ApeKI GCWGC 3 cut(s) 28, 61, 887
ApoI RAATTY 5 cut(s) 73, 336, 525, 877, 1241
AspLEI GCGC 1 cut(s) 290
AspS9I GGNCC 6 cut(s) 146, 512, 576, 950, 986, 1202
AsuII TTCGAA 2 cut(s) 931, 1284
AvaII GGWCC 5 cut(s) 146, 512, 576, 986, 1202
BaeGI GKGCMC 1 cut(s) 1043
BalI TGGCCA 2 cut(s) 21, 348
BarI GAAGNNNNNNTAC 2 cut(s) 192, 224
BbsI GAAGAC 1 cut(s) 1425
BbvI GCAGC 3 cut(s) 40, 48, 874
BccI CCATC 4 cut(s) 523, 551, 911, 1064
BciT130I CCWGG 3 cut(s) 162, 954, 1137
BciVI GTATCC 2 cut(s) 544, 1062
BclI TGATCA 1 cut(s) 319
BcoDI GTCTC 3 cut(s) 1102, 1135, 1171
BfaI CTAG 6 cut(s) 141, 306, 1292, 1407, 1428, 1465
BfmI CTRYAG 1 cut(s) 888
BfoI RGCGCY 1 cut(s) 291
BfuI GTATCC 2 cut(s) 544, 1062
BglII AGATCT 1 cut(s) 827
BisI GCNGC 3 cut(s) 29, 62, 888
BlsI GCNGC 3 cut(s) 30, 63, 889
BmcAI AGTACT 1 cut(s) 926
Bme1390I CCNGG 3 cut(s) 162, 954, 1137
Bme18I GGWCC 5 cut(s) 146, 512, 576, 986, 1202
BmgT120I GGNCC 6 cut(s) 146, 512, 576, 950, 986, 1202
BmrFI CCNGG 3 cut(s) 162, 954, 1137
BmsI GCATC 1 cut(s) 164
BpiI GAAGAC 1 cut(s) 1425
BpmI CTGGAG 2 cut(s) 666, 1406
Bpu10I CCTNAGC 1 cut(s) 1415
Bpu14I TTCGAA 2 cut(s) 931, 1284
Bsa29I ATCGAT 2 cut(s) 1094, 1167
BsaBI GATNNNNATC 2 cut(s) 321, 816
BsaHI GRCGYC 1 cut(s) 1411
BsaI GGTCTC 1 cut(s) 1102
BsaJI CCNNGG 5 cut(s) 160, 236, 283, 568, 661
BsaWI WCCGGW 1 cut(s) 1212
Bsc4I CCNNNNNNNGG 1 cut(s) 1062
Bse1I ACTGG 3 cut(s) 259, 349, 807
Bse3DI GCAATG 1 cut(s) 138
Bse8I GATNNNNATC 2 cut(s) 321, 816
BseAI TCCGGA 1 cut(s) 1212
BseBI CCWGG 3 cut(s) 162, 954, 1137
BseCI ATCGAT 2 cut(s) 1094, 1167
BseDI CCNNGG 5 cut(s) 160, 236, 283, 568, 661
BseGI GGATG 4 cut(s) 155, 457, 499, 515
BseJI GATNNNNATC 2 cut(s) 321, 816
BseLI CCNNNNNNNGG 1 cut(s) 1062
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 4 cut(s) 851, 927, 966, 1406
BseNI ACTGG 3 cut(s) 259, 349, 807
BseRI GAGGAG 1 cut(s) 529
BseSI GKGCMC 1 cut(s) 1043
BseXI GCAGC 3 cut(s) 40, 48, 874
BshFI GGCC 4 cut(s) 21, 348, 567, 952
BshVI ATCGAT 2 cut(s) 1094, 1167
BsiSI CCGG 1 cut(s) 1213
BslI CCNNNNNNNGG 1 cut(s) 1062
BsmAI GTCTC 3 cut(s) 1102, 1135, 1171
BsmI GAATGC 1 cut(s) 1208
BsnI GGCC 4 cut(s) 21, 348, 567, 952
Bso31I GGTCTC 1 cut(s) 1102
Bsp119I TTCGAA 2 cut(s) 931, 1284
Bsp1286I GDGCHC 1 cut(s) 1043
Bsp13I TCCGGA 1 cut(s) 1212
Bsp143I GATC 6 cut(s) 55, 319, 560, 817, 827, 1139
Bsp19I CCATGG 2 cut(s) 568, 661
BspACI CCGC 1 cut(s) 1307
BspANI GGCC 4 cut(s) 21, 348, 567, 952
BspCNI CTCAG 4 cut(s) 852, 926, 967, 1407
BspDI ATCGAT 2 cut(s) 1094, 1167
BspEI TCCGGA 1 cut(s) 1212
BspMAI CTGCAG 1 cut(s) 892
BspPI GGATC 2 cut(s) 568, 1147
BspQI GCTCTTC 1 cut(s) 914
BspT104I TTCGAA 2 cut(s) 931, 1284
BspTNI GGTCTC 1 cut(s) 1102
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 3 cut(s) 259, 349, 807
BssECI CCNNGG 5 cut(s) 160, 236, 283, 568, 661
BssMI GATC 6 cut(s) 55, 319, 560, 817, 827, 1139
BssNI GRCGYC 1 cut(s) 1411
BssT1I CCWWGG 3 cut(s) 283, 568, 661
Bst2UI CCWGG 3 cut(s) 162, 954, 1137
Bst4CI ACNGT 3 cut(s) 233, 425, 1065
Bst6I CTCTTC 2 cut(s) 853, 914
BstACI GRCGYC 1 cut(s) 1411
BstBI TTCGAA 2 cut(s) 931, 1284
BstC8I GCNNGC 3 cut(s) 471, 1191, 1338
BstDEI CTNAG 5 cut(s) 714, 860, 913, 975, 1415
BstDSI CCRYGG 2 cut(s) 568, 661
BstF5I GGATG 4 cut(s) 155, 457, 499, 515
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 1 cut(s) 290
BstKTI GATC 6 cut(s) 58, 322, 563, 820, 830, 1142
BstMAI GTCTC 3 cut(s) 1102, 1135, 1171
BstMBI GATC 6 cut(s) 55, 319, 560, 817, 827, 1139
BstMWI GCNNNNNNNGC 1 cut(s) 1371
BstNI CCWGG 3 cut(s) 162, 954, 1137
BstNSI RCATGY 1 cut(s) 363
BstSCI CCNGG 3 cut(s) 160, 952, 1135
BstSFI CTRYAG 1 cut(s) 888
BstSLI GKGCMC 1 cut(s) 1043
BstV1I GCAGC 3 cut(s) 40, 48, 874
BstV2I GAAGAC 1 cut(s) 1425
BstX2I RGATCY 2 cut(s) 827, 1139
BstYI RGATCY 2 cut(s) 827, 1139
Bsu15I ATCGAT 2 cut(s) 1094, 1167
BsuI GTATCC 2 cut(s) 544, 1062
BsuRI GGCC 4 cut(s) 21, 348, 567, 952
BsuTUI ATCGAT 2 cut(s) 1094, 1167
BtgI CCRYGG 2 cut(s) 568, 661
BtsCI GGATG 4 cut(s) 155, 457, 499, 515
BtsIMutI CAGTG 2 cut(s) 814, 857
Cac8I GCNNGC 3 cut(s) 471, 1191, 1338
CaiI CAGNNNCTG 1 cut(s) 1082
CfoI GCGC 1 cut(s) 290
Cfr13I GGNCC 6 cut(s) 146, 512, 576, 950, 986, 1202
ClaI ATCGAT 2 cut(s) 1094, 1167
CseI GACGC 1 cut(s) 1419
Csp6I GTAC 3 cut(s) 342, 925, 1278
CviAII CATG 6 cut(s) 218, 360, 377, 569, 662, 1257
CviQI GTAC 3 cut(s) 342, 925, 1278
DdeI CTNAG 5 cut(s) 714, 860, 913, 975, 1415
DpnI GATC 6 cut(s) 57, 321, 562, 819, 829, 1141
DpnII GATC 6 cut(s) 55, 319, 560, 817, 827, 1139
EaeI YGGCCR 2 cut(s) 19, 346
Eam1104I CTCTTC 2 cut(s) 853, 914
EarI CTCTTC 2 cut(s) 853, 914
Eco130I CCWWGG 3 cut(s) 283, 568, 661
Eco31I GGTCTC 1 cut(s) 1102
Eco32I GATATC 1 cut(s) 88
Eco47I GGWCC 5 cut(s) 146, 512, 576, 986, 1202
Eco57I CTGAAG 4 cut(s) 485, 822, 834, 987
EcoO109I RGGNCCY 1 cut(s) 986
EcoRI GAATTC 2 cut(s) 73, 336
EcoRII CCWGG 3 cut(s) 160, 952, 1135
EcoRV GATATC 1 cut(s) 88
EcoT14I CCWWGG 3 cut(s) 283, 568, 661
ErhI CCWWGG 3 cut(s) 283, 568, 661
FaeI CATG 6 cut(s) 221, 363, 380, 572, 665, 1260
FalI AAGNNNNNCTT 2 cut(s) 1325, 1357
FatI CATG 6 cut(s) 217, 359, 376, 568, 661, 1256
FbaI TGATCA 1 cut(s) 319
Fnu4HI GCNGC 3 cut(s) 29, 62, 888
FokI GGATG 4 cut(s) 142, 464, 502, 506
Fsp4HI GCNGC 3 cut(s) 29, 62, 888
FspBI CTAG 6 cut(s) 141, 306, 1292, 1407, 1428, 1465
GlaI GCGC 1 cut(s) 289
GluI GCNGC 3 cut(s) 29, 62, 888
GsuI CTGGAG 2 cut(s) 666, 1406
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 4 cut(s) 21, 348, 567, 952
HapII CCGG 1 cut(s) 1213
HgaI GACGC 1 cut(s) 1419
HhaI GCGC 1 cut(s) 290
Hin1I GRCGYC 1 cut(s) 1411
Hin1II CATG 6 cut(s) 221, 363, 380, 572, 665, 1260
Hin6I GCGC 1 cut(s) 288
HinP1I GCGC 1 cut(s) 288
HincII GTYRAC 2 cut(s) 441, 678
HindII GTYRAC 2 cut(s) 441, 678
HindIII AAGCTT 2 cut(s) 36, 1334
HpaII CCGG 1 cut(s) 1213
Hpy166II GTNNAC 2 cut(s) 441, 678
Hpy188I TCNGA 5 cut(s) 103, 240, 316, 775, 916
Hpy188III TCNNGA 9 cut(s) 194, 294, 331, 429, 491, 683, 974, 1213, 1423
Hpy8I GTNNAC 2 cut(s) 441, 678
HpyAV CCTTC 3 cut(s) 846, 1096, 1291
HpyCH4III ACNGT 3 cut(s) 233, 425, 1065
HpyCH4IV ACGT 2 cut(s) 1011, 1395
HpyF10VI GCNNNNNNNGC 1 cut(s) 1371
HpyF3I CTNAG 5 cut(s) 714, 860, 913, 975, 1415
HpySE526I ACGT 2 cut(s) 1011, 1395
Hsp92I GRCGYC 1 cut(s) 1411
Hsp92II CATG 6 cut(s) 221, 363, 380, 572, 665, 1260
HspAI GCGC 1 cut(s) 288
Kpn2I TCCGGA 1 cut(s) 1212
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 6 cut(s) 55, 319, 560, 817, 827, 1139
LguI GCTCTTC 1 cut(s) 914
LmnI GCTCC 1 cut(s) 1079
Lsp1109I GCAGC 3 cut(s) 40, 48, 874
LweI GCATC 1 cut(s) 164
MaeI CTAG 6 cut(s) 141, 306, 1292, 1407, 1428, 1465
MaeII ACGT 2 cut(s) 1011, 1395
MaeIII GTNAC 4 cut(s) 355, 413, 605, 1007
MalI GATC 6 cut(s) 57, 321, 562, 819, 829, 1141
MboI GATC 6 cut(s) 55, 319, 560, 817, 827, 1139
MboII GAAGA 6 cut(s) 385, 741, 812, 840, 901, 1425
MfeI CAATTG 2 cut(s) 444, 945
MflI RGATCY 2 cut(s) 827, 1139
MhlI GDGCHC 1 cut(s) 1043
MlsI TGGCCA 2 cut(s) 21, 348
MluNI TGGCCA 2 cut(s) 21, 348
MlyI GAGTC 7 cut(s) 131, 199, 336, 662, 673, 1109, 1173
MmeI TCCRAC 3 cut(s) 31, 554, 717
Mox20I TGGCCA 2 cut(s) 21, 348
MroI TCCGGA 1 cut(s) 1212
MscI TGGCCA 2 cut(s) 21, 348
MseI TTAA 7 cut(s) 267, 365, 545, 638, 723, 1067, 1344
MslI CAYNNNNRTG 2 cut(s) 1046, 1167
Msp20I TGGCCA 2 cut(s) 21, 348
MspA1I CMGCKG 1 cut(s) 61
MspI CCGG 1 cut(s) 1213
MspR9I CCNGG 3 cut(s) 162, 954, 1137
MunI CAATTG 2 cut(s) 444, 945
Mva1269I GAATGC 1 cut(s) 1208
MvaI CCWGG 3 cut(s) 162, 954, 1137
MwoI GCNNNNNNNGC 1 cut(s) 1371
NcoI CCATGG 2 cut(s) 568, 661
NdeII GATC 6 cut(s) 55, 319, 560, 817, 827, 1139
NlaIII CATG 6 cut(s) 221, 363, 380, 572, 665, 1260
NmuCI GTSAC 1 cut(s) 355
NspI RCATGY 1 cut(s) 363
NspV TTCGAA 2 cut(s) 931, 1284
PciSI GCTCTTC 1 cut(s) 914
PcsI WCGNNNNNNNCGW 1 cut(s) 244
PctI GAATGC 1 cut(s) 1208
PfeI GAWTC 7 cut(s) 8, 98, 728, 746, 770, 1286, 1303
PflFI GACNNNGTC 1 cut(s) 1429
PfoI TCCNGGA 1 cut(s) 1135
PkrI GCNGC 3 cut(s) 30, 63, 889
PleI GAGTC 7 cut(s) 131, 198, 335, 661, 673, 1109, 1173
PpsI GAGTC 7 cut(s) 131, 198, 335, 661, 673, 1109, 1173
PpuMI RGGWCCY 1 cut(s) 986
Psp5II RGGWCCY 1 cut(s) 986
Psp6I CCWGG 3 cut(s) 160, 952, 1135
PspGI CCWGG 3 cut(s) 160, 952, 1135
PspPI GGNCC 6 cut(s) 146, 512, 576, 950, 986, 1202
PspPPI RGGWCCY 1 cut(s) 986
PstI CTGCAG 1 cut(s) 892
PstNI CAGNNNCTG 1 cut(s) 1082
PsuI RGATCY 2 cut(s) 827, 1139
PsyI GACNNNGTC 1 cut(s) 1429
PvuII CAGCTG 1 cut(s) 61
RsaI GTAC 3 cut(s) 343, 926, 1279
RsaNI GTAC 3 cut(s) 342, 925, 1278
RseI CAYNNNNRTG 2 cut(s) 1046, 1167
SapI GCTCTTC 1 cut(s) 914
SaqAI TTAA 7 cut(s) 267, 365, 545, 638, 723, 1067, 1344
SatI GCNGC 3 cut(s) 29, 62, 888
Sau3AI GATC 6 cut(s) 55, 319, 560, 817, 827, 1139
Sau96I GGNCC 6 cut(s) 146, 512, 576, 950, 986, 1202
ScaI AGTACT 1 cut(s) 926
SchI GAGTC 7 cut(s) 131, 199, 336, 662, 673, 1109, 1173
ScrFI CCNGG 3 cut(s) 162, 954, 1137
SduI GDGCHC 1 cut(s) 1043
SfaNI GCATC 1 cut(s) 164
SfcI CTRYAG 1 cut(s) 888
SfuI TTCGAA 2 cut(s) 931, 1284
SinI GGWCC 5 cut(s) 146, 512, 576, 986, 1202
SmiMI CAYNNNNRTG 2 cut(s) 1046, 1167
SsiI CCGC 1 cut(s) 1307
SspI AATATT 1 cut(s) 897
SspMI CTAG 6 cut(s) 141, 306, 1292, 1407, 1428, 1465
StyD4I CCNGG 3 cut(s) 160, 952, 1135
StyI CCWWGG 3 cut(s) 283, 568, 661
TaaI ACNGT 3 cut(s) 233, 425, 1065
TaiI ACGT 2 cut(s) 1014, 1398
TatI WGTACW 1 cut(s) 924
TfiI GAWTC 7 cut(s) 8, 98, 728, 746, 770, 1286, 1303
Tru1I TTAA 7 cut(s) 267, 365, 545, 638, 723, 1067, 1344
Tru9I TTAA 7 cut(s) 267, 365, 545, 638, 723, 1067, 1344
TscAI CASTG 2 cut(s) 814, 864
TseFI GTSAC 1 cut(s) 355
TseI GCWGC 3 cut(s) 28, 61, 887
Tsp45I GTSAC 1 cut(s) 355
TspDTI ATGAA 8 cut(s) 206, 393, 468, 1185, 1245, 1332, 1390, 1458
TspGWI ACGGA 2 cut(s) 196, 1172
TspRI CASTG 2 cut(s) 814, 864
Tth111I GACNNNGTC 1 cut(s) 1429
VpaK11BI GGWCC 5 cut(s) 146, 512, 576, 986, 1202
XapI RAATTY 5 cut(s) 73, 336, 525, 877, 1241
XceI RCATGY 1 cut(s) 363
XspI CTAG 6 cut(s) 141, 306, 1292, 1407, 1428, 1465
ZrmI AGTACT 1 cut(s) 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.