Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8471153.1

Orthogroup ID

OG0004237

Physical Location & Seq

Genomic Coordinates Reverse (-)

699 .. 1667

Gene Structure 969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8471153.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

atgtctggaaattcgttgacaaatgaggatgattatcgagtgaagcaatgttgtcccaatttgaccattctggatgatatggaaaaatacggtgctccctacaaggataattctgcttctcccctcattgatgcaaatgaatcagtccatggttcgagtacattaagtctggaaaaatccaacttctgtgatgcaaccactttgaaggttaatgattcagttgacagttcagattctttcagtttagatgagtatgattcagaacttgaaagggcattgaggttattggtttccagtgatgatgattttcgaagatctgttacttccgctcaccctaaaatgaagtcagaggagagaaatcataaggcttgcgaaatattgagatgtttattttccgatggcaagtattttcgaaggtctgttcccattggccgtgattttcaggctgatgttccaaagtggataggaccagtcaataggaataagctttacagtgaggatggtgattcagaagtgtcaaggtggttgggcacgcttatctggccaatcaaagggaggaaatgtggaggagctaccataaaagcaattgggaaagggagacctgagtcttgttcttgtgtctctccaggatctgttgattgtgtcaaacaccatattcatgaagcacgactttgcttgcagtccgagattggtcctgccttctgcagttggaagtttgacgaaatgggagaatttgcctcaaagtcatggactttaaaagaacagagaacctttgaatctcttgtgagaacaaatccactatcaaacgaagcaagcttttggaagcttgcgtttaagcgtttccctgataagcgcaagaagagcatcgtgagttattactataatgtgttcatccctagacgtatgagccttgagactagatcttcccttgatgaaattgacagcgatgatgactcgatagaggtatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELM2

Protein Analysis

322

Amino Acids

36.49

Weight (kDa)

5.8

Isoelectric Point (pI)

58.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004237)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12001 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700
malus_domestica	MD04G1147000.v1.1 MD12G1160300.v1.1
prunus_persica	Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1
pyrus_communis	pycom04g13280 pycom12g15210
rosa_chinensis	RchiOBHm_Chr3g0463841 RchiOBHm_Chr3g0470651
rosa_laevigata	RLG00000024250 RLG00000024752
rosa_multiflora	Rmu_co8471153.1_g000001 Rmu_sc0004796.1_g000007
rosa_roxburghii	Rroxscaffold_6G00410630
rosa_rugosa	Rorug03G0068200 Rorug03G0068300 Rorug03G0111300 Rorug03G0111400
rosa_samantha	Rh3AG125500 Rh3AG161000 Rh3BG129600 Rh3BG185600 Rh3CG132100 Rh3CG175900 Rh3DG189200
rosa_wichuraiana	Rw3G010590 Rw3G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	329
AciI	CCGC	1 cut(s)	327
AclWI	GGATC	1 cut(s)	637
AcoI	YGGCCR	2 cut(s)	430, 542
AcsI	RAATTY	2 cut(s)	10, 731
AfaI	GTAC	1 cut(s)	160
AfiI	CCNNNNNNNGG	1 cut(s)	551
AgsI	TTSAA	3 cut(s)	205, 269, 776
AjnI	CCWGG	1 cut(s)	625
AluBI	AGCT	4 cut(s)	487, 572, 816, 826
AluI	AGCT	4 cut(s)	487, 572, 816, 826
Alw21I	GWGCWC	1 cut(s)	97
Alw26I	GTCTC	3 cut(s)	592, 625, 908
AlwI	GGATC	1 cut(s)	637
AlwNI	CAGNNNCTG	1 cut(s)	632
AoxI	GGCC	2 cut(s)	430, 542
ApoI	RAATTY	2 cut(s)	10, 731
AspLEI	GCGC	1 cut(s)	855
AspS9I	GGNCC	2 cut(s)	467, 692
AsuHPI	GGTGA	2 cut(s)	323, 515
AsuII	TTCGAA	2 cut(s)	310, 412
AvaII	GGWCC	2 cut(s)	467, 692
BaeGI	GKGCMC	1 cut(s)	533
BalI	TGGCCA	1 cut(s)	544
BarI	GAAGNNNNNNTAC	2 cut(s)	304, 336
Bbv12I	GWGCWC	1 cut(s)	97
BccI	CCATC	2 cut(s)	392, 494
BceAI	ACGGC	1 cut(s)	417
BciT130I	CCWGG	1 cut(s)	627
BcoDI	GTCTC	3 cut(s)	592, 625, 908
BfaI	CTAG	2 cut(s)	897, 918
BfmI	CTRYAG	1 cut(s)	703
BglII	AGATCT	2 cut(s)	314, 920
Bme1390I	CCNGG	1 cut(s)	627
Bme18I	GGWCC	2 cut(s)	467, 692
BmgT120I	GGNCC	2 cut(s)	467, 692
BmrFI	CCNGG	1 cut(s)	627
BmsI	GCATC	3 cut(s)	121, 181, 873
BoxI	GACNNNNGTC	1 cut(s)	604
BpmI	CTGGAG	1 cut(s)	609
Bpu14I	TTCGAA	2 cut(s)	310, 412
BpuEI	CTTGAG	1 cut(s)	932
BsaBI	GATNNNNATC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	592
BsaJI	CCNNGG	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	547, 577
Bsc4I	CCNNNNNNNGG	1 cut(s)	551
Bse1I	ACTGG	2 cut(s)	294, 470
Bse3DI	GCAATG	1 cut(s)	53
Bse8I	GATNNNNATC	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	627
BseDI	CCNNGG	1 cut(s)	148
BseGI	GGATG	4 cut(s)	34, 79, 505, 891
BseJI	GATNNNNATC	1 cut(s)	33
BseLI	CCNNNNNNNGG	1 cut(s)	551
BseMI	GCAATG	1 cut(s)	53
BseMII	CTCAG	1 cut(s)	594
BseNI	ACTGG	2 cut(s)	294, 470
BseRI	GAGGAG	2 cut(s)	365, 582
BseSI	GKGCMC	1 cut(s)	533
BshFI	GGCC	2 cut(s)	432, 544
BsiHKAI	GWGCWC	1 cut(s)	97
BslFI	GGGAC	1 cut(s)	39
BslI	CCNNNNNNNGG	1 cut(s)	551
BsmAI	GTCTC	3 cut(s)	592, 625, 908
BsmFI	GGGAC	1 cut(s)	39
BsnI	GGCC	2 cut(s)	432, 544
Bso31I	GGTCTC	1 cut(s)	592
Bsp119I	TTCGAA	2 cut(s)	310, 412
Bsp1286I	GDGCHC	2 cut(s)	97, 533
Bsp143I	GATC	3 cut(s)	314, 629, 920
Bsp19I	CCATGG	1 cut(s)	148
BspACI	CCGC	1 cut(s)	327
BspANI	GGCC	2 cut(s)	432, 544
BspCNI	CTCAG	1 cut(s)	595
BspHI	TCATGA	1 cut(s)	658
BspMAI	CTGCAG	1 cut(s)	707
BspPI	GGATC	1 cut(s)	637
BspQI	GCTCTTC	1 cut(s)	854
BspT104I	TTCGAA	2 cut(s)	310, 412
BspTNI	GGTCTC	1 cut(s)	592
BsrBI	CCGCTC	1 cut(s)	329
BsrDI	GCAATG	1 cut(s)	53
BsrI	ACTGG	2 cut(s)	294, 470
BssECI	CCNNGG	1 cut(s)	148
BssMI	GATC	3 cut(s)	314, 629, 920
BssT1I	CCWWGG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	627
Bst4CI	ACNGT	3 cut(s)	92, 227, 494
Bst6I	CTCTTC	1 cut(s)	854
BstBI	TTCGAA	2 cut(s)	310, 412
BstC8I	GCNNGC	5 cut(s)	370, 533, 677, 814, 828
BstDEI	CTNAG	1 cut(s)	603
BstDSI	CCRYGG	1 cut(s)	148
BstF5I	GGATG	4 cut(s)	34, 79, 505, 891
BstHHI	GCGC	1 cut(s)	855
BstKTI	GATC	3 cut(s)	317, 632, 923
BstMAI	GTCTC	3 cut(s)	592, 625, 908
BstMBI	GATC	3 cut(s)	314, 629, 920
BstMWI	GCNNNNNNNGC	2 cut(s)	541, 861
BstNI	CCWGG	1 cut(s)	627
BstPAI	GACNNNNGTC	1 cut(s)	604
BstSCI	CCNGG	1 cut(s)	625
BstSFI	CTRYAG	1 cut(s)	703
BstSLI	GKGCMC	1 cut(s)	533
BstX2I	RGATCY	3 cut(s)	314, 629, 920
BstYI	RGATCY	3 cut(s)	314, 629, 920
BsuRI	GGCC	2 cut(s)	432, 544
BtgI	CCRYGG	1 cut(s)	148
BtgZI	GCGATG	1 cut(s)	960
BtsCI	GGATG	4 cut(s)	34, 79, 505, 891
BtsIMutI	CAGTG	2 cut(s)	301, 499
Cac8I	GCNNGC	5 cut(s)	370, 533, 677, 814, 828
CaiI	CAGNNNCTG	1 cut(s)	632
CciI	TCATGA	1 cut(s)	658
CfoI	GCGC	1 cut(s)	855
Cfr13I	GGNCC	2 cut(s)	467, 692
Csp6I	GTAC	1 cut(s)	159
CviAII	CATG	3 cut(s)	149, 659, 747
CviJI	RGCY	9 cut(s)	368, 432, 446, 487, 544, 572, 816, 826, 909
CviKI_1	RGCY	9 cut(s)	368, 432, 446, 487, 544, 572, 816, 826, 909
CviQI	GTAC	1 cut(s)	159
DdeI	CTNAG	1 cut(s)	603
DpnI	GATC	3 cut(s)	316, 631, 922
DpnII	GATC	3 cut(s)	314, 629, 920
DraI	TTTAAA	1 cut(s)	756
EaeI	YGGCCR	2 cut(s)	430, 542
Eam1104I	CTCTTC	1 cut(s)	854
EarI	CTCTTC	1 cut(s)	854
Eco130I	CCWWGG	1 cut(s)	148
Eco31I	GGTCTC	1 cut(s)	592
Eco47I	GGWCC	2 cut(s)	467, 692
EcoRII	CCWGG	1 cut(s)	625
EcoT14I	CCWWGG	1 cut(s)	148
ErhI	CCWWGG	1 cut(s)	148
FaeI	CATG	3 cut(s)	152, 662, 750
FalI	AAGNNNNNCTT	2 cut(s)	654, 686
FaqI	GGGAC	1 cut(s)	39
FatI	CATG	3 cut(s)	148, 658, 746
FokI	GGATG	4 cut(s)	41, 86, 512, 878
FspBI	CTAG	2 cut(s)	897, 918
GlaI	GCGC	1 cut(s)	854
GsuI	CTGGAG	1 cut(s)	609
HaeIII	GGCC	2 cut(s)	432, 544
HhaI	GCGC	1 cut(s)	855
Hin1II	CATG	3 cut(s)	152, 662, 750
Hin6I	GCGC	1 cut(s)	853
HinP1I	GCGC	1 cut(s)	853
HincII	GTYRAC	2 cut(s)	18, 223
HindII	GTYRAC	2 cut(s)	18, 223
HindIII	AAGCTT	3 cut(s)	485, 814, 824
HinfI	GANTC	8 cut(s)	140, 215, 233, 257, 506, 605, 776, 953
HphI	GGTGA	2 cut(s)	323, 515
Hpy166II	GTNNAC	2 cut(s)	18, 223
Hpy188I	TCNGA	6 cut(s)	232, 262, 349, 397, 511, 685
Hpy188III	TCNNGA	5 cut(s)	6, 71, 170, 659, 868
Hpy8I	GTNNAC	2 cut(s)	18, 223
HpyAV	CCTTC	3 cut(s)	199, 408, 709
HpyCH4III	ACNGT	3 cut(s)	92, 227, 494
HpyCH4IV	ACGT	1 cut(s)	901
HpyCH4V	TGCA	4 cut(s)	134, 194, 679, 705
HpyF10VI	GCNNNNNNNGC	2 cut(s)	541, 861
HpyF3I	CTNAG	1 cut(s)	603
HpySE526I	ACGT	1 cut(s)	901
Hsp92II	CATG	3 cut(s)	152, 662, 750
HspAI	GCGC	1 cut(s)	853
Kzo9I	GATC	3 cut(s)	314, 629, 920
LguI	GCTCTTC	1 cut(s)	854
LmnI	GCTCC	2 cut(s)	100, 569
LweI	GCATC	3 cut(s)	121, 181, 873
MaeI	CTAG	2 cut(s)	897, 918
MaeII	ACGT	1 cut(s)	901
MaeIII	GTNAC	1 cut(s)	319
MalI	GATC	3 cut(s)	316, 631, 922
MbiI	CCGCTC	1 cut(s)	329
MboI	GATC	3 cut(s)	314, 629, 920
MboII	GAAGA	3 cut(s)	324, 871, 915
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	3 cut(s)	314, 629, 920
MhlI	GDGCHC	2 cut(s)	97, 533
MlsI	TGGCCA	1 cut(s)	544
MluCI	AATT	6 cut(s)	10, 58, 109, 585, 731, 936
MluNI	TGGCCA	1 cut(s)	544
MlyI	GAGTC	2 cut(s)	614, 947
MmeI	TCCRAC	2 cut(s)	204, 689
MnlI	CCTC	9 cut(s)	19, 134, 273, 343, 490, 549, 560, 748, 955
Mox20I	TGGCCA	1 cut(s)	544
MscI	TGGCCA	1 cut(s)	544
MseI	TTAA	4 cut(s)	164, 210, 755, 834
MslI	CAYNNNNRTG	1 cut(s)	657
Msp20I	TGGCCA	1 cut(s)	544
MspR9I	CCNGG	1 cut(s)	627
MunI	CAATTG	1 cut(s)	585
MvaI	CCWGG	1 cut(s)	627
MwoI	GCNNNNNNNGC	2 cut(s)	541, 861
NcoI	CCATGG	1 cut(s)	148
NdeII	GATC	3 cut(s)	314, 629, 920
NlaIII	CATG	3 cut(s)	152, 662, 750
NspV	TTCGAA	2 cut(s)	310, 412
PagI	TCATGA	1 cut(s)	658
PciSI	GCTCTTC	1 cut(s)	854
PfeI	GAWTC	6 cut(s)	140, 215, 233, 257, 506, 776
PfoI	TCCNGGA	1 cut(s)	625
PleI	GAGTC	2 cut(s)	613, 947
PpsI	GAGTC	2 cut(s)	613, 947
PshAI	GACNNNNGTC	1 cut(s)	604
Psp6I	CCWGG	1 cut(s)	625
PspGI	CCWGG	1 cut(s)	625
PspPI	GGNCC	2 cut(s)	467, 692
PstI	CTGCAG	1 cut(s)	707
PstNI	CAGNNNCTG	1 cut(s)	632
PsuI	RGATCY	3 cut(s)	314, 629, 920
RsaI	GTAC	1 cut(s)	160
RsaNI	GTAC	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	657
SapI	GCTCTTC	1 cut(s)	854
SaqAI	TTAA	4 cut(s)	164, 210, 755, 834
Sau3AI	GATC	3 cut(s)	314, 629, 920
Sau96I	GGNCC	2 cut(s)	467, 692
SchI	GAGTC	2 cut(s)	614, 947
ScrFI	CCNGG	1 cut(s)	627
SduI	GDGCHC	2 cut(s)	97, 533
SfaNI	GCATC	3 cut(s)	121, 181, 873
SfcI	CTRYAG	1 cut(s)	703
SfuI	TTCGAA	2 cut(s)	310, 412
SinI	GGWCC	2 cut(s)	467, 692
SmiMI	CAYNNNNRTG	1 cut(s)	657
SmlI	CTYRAG	1 cut(s)	911
SmoI	CTYRAG	1 cut(s)	911
Sse9I	AATT	6 cut(s)	10, 58, 109, 585, 731, 936
SsiI	CCGC	1 cut(s)	327
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	2 cut(s)	897, 918
StyD4I	CCNGG	1 cut(s)	625
StyI	CCWWGG	1 cut(s)	148
TaaI	ACNGT	3 cut(s)	92, 227, 494
TaiI	ACGT	1 cut(s)	904
TaqI	TCGA	5 cut(s)	37, 155, 310, 412, 956
TasI	AATT	6 cut(s)	10, 58, 109, 585, 731, 936
TatI	WGTACW	1 cut(s)	158
TfiI	GAWTC	6 cut(s)	140, 215, 233, 257, 506, 776
Tru1I	TTAA	4 cut(s)	164, 210, 755, 834
Tru9I	TTAA	4 cut(s)	164, 210, 755, 834
TscAI	CASTG	2 cut(s)	301, 499
TspDTI	ATGAA	6 cut(s)	153, 356, 647, 675, 880, 948
TspRI	CASTG	2 cut(s)	301, 499
VpaK11BI	GGWCC	2 cut(s)	467, 692
XapI	RAATTY	2 cut(s)	10, 731
XspI	CTAG	2 cut(s)	897, 918

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.