Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0004237

Physical Location & Seq

Genomic Coordinates Forward (+)

33050894 .. 33054484

Gene Structure 3591 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1422 bp

ATGGCTGATATGTCATTATCGACAAGTCATGGTAGTCATGACAATCAAGGGAGTGATGCGAAGACTGCTTTGCACCCGAGGGATCCGATGAGAGAAACAAAATCGTCTTTTGGTTTCTATTCTGATTCTGACATATTGGTGTGGTTAAAAGGCCTTGCAATTGACTCTGGATATTGTAAAGCATCCCCAGGTTCAGCTCAACAGTTATGGAATCAGAGTCTTGAACTACGGAAACTTTTGCTTCTTGGTAATGACGTTTCTCCTCGGAGTAAGCGAAAACTTGATCACTTCCTAAGAGGTGGTAGATTTGCAGGCACTTCAGAATTGGAAACGAAGAAATCCAATGATCATGTAAAGAGAATTTGTAGAGGGCATTCTGTCTCATGCTCAACCAATACAGGTGGCAAGAATGAAATTTTCAGACCACAGATTCTATGTAGTTCACTCATGGCTGGAAATTCGTTGACAAATGAGGATGAATATCAAGCGAAGCAATGTTGTCCCGATTTGACCATTCTGGATGATATGGAAAAATATGGTGCTCCCTACAAGGATAATTCTGCTTCTCCCCTCATTGATGCAGATGAATCAGTCCATGGTTCGAGTACATTAAGTCTGGAAAAATCCAACTTCTGTGATGCAACCACTTTGAAGGTTAATGATTCAGTTGACAGTTTAGATTCTTTCAGTTTAGATGAGTATGATTCAGAACTTGAAAGGGCATTGAGGTTATTGGTTTCCAGTGATGATGATCTTCGAAGATCTGTTACTTCTGCTCACCCTACAGCTTCATTGAGGTCAGAGGAGAGAAATCATAAGGCTTGCGAAATATTGAGATGTTTATTTTCCGATGGCAAGTATTTTCGAAGGTCTGTTCCCATTGGCCGTGATTTTCAGGCTGATGTTCCAAAGTGGATAGGACCAGTCAATAGGAATAAGCTTTACAGTGAGGATGGTGATTCAGAAGTGTCAAGGTGGTTGGGCACGCTTATCTGGCCAATCAAAGGGAGGAAATGTGGAGGAGCTACCATAAAAGCAATTGGGAAAGGGAGACCTGAGTCTTGTTCTTGTGTCTCTCCAGGATCTGTTCATTGTGTCAAACACCATATTCATGAAGCACGACTTTGCTTGCAGTCTGAGATCGGTCCTGCCTTCTGCAGTTGGAAGTTTGACGAAATGGGAGAATTTGCCTCAAAGTCATGGACTTTAAAAGAACAGAGAACTTTTGAATCTCTTGTGAGAACAAATCCACTATCAAATGAAGCAAGCTTTTGGAAGCTTGCGTTTAAGCGTTTCCCTGATAAGCGCAAGAAGAGCATCGTGAGTTATTACTATAATGTGTTCATCCCCAGACGTATGAGCCTTGAGACTAGATCTTCCCTTGATGAAATTGACAGCGATGATGACTCAATAGAGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELM2

Protein Analysis

473

Amino Acids

52.98

Weight (kDa)

6.68

Isoelectric Point (pI)

54.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004237)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12001 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700
malus_domestica	MD04G1147000.v1.1 MD12G1160300.v1.1
prunus_persica	Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1
pyrus_communis	pycom04g13280 pycom12g15210
rosa_chinensis	RchiOBHm_Chr3g0463841 RchiOBHm_Chr3g0470651
rosa_laevigata	RLG00000024250 RLG00000024752
rosa_multiflora	Rmu_co8471153.1_g000001 Rmu_sc0004796.1_g000007
rosa_roxburghii	Rroxscaffold_6G00410630
rosa_rugosa	Rorug03G0068200 Rorug03G0068300 Rorug03G0111300 Rorug03G0111400
rosa_samantha	Rh3AG125500 Rh3AG161000 Rh3BG129600 Rh3BG185600 Rh3CG132100 Rh3CG175900 Rh3DG189200
rosa_wichuraiana	Rw3G010590 Rw3G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	77, 90, 1090
AcoI	YGGCCR	2 cut(s)	883, 995
AcsI	RAATTY	4 cut(s)	360, 414, 457, 1184
AcuI	CTGAAG	1 cut(s)	303
AfaI	GTAC	1 cut(s)	607
AfiI	CCNNNNNNNGG	1 cut(s)	1004
AgsI	TTSAA	4 cut(s)	224, 652, 716, 1229
AjnI	CCWGG	2 cut(s)	187, 1078
AluBI	AGCT	6 cut(s)	197, 788, 940, 1025, 1269, 1279
AluI	AGCT	6 cut(s)	197, 788, 940, 1025, 1269, 1279
Alw21I	GWGCWC	1 cut(s)	544
Alw26I	GTCTC	4 cut(s)	385, 1045, 1078, 1361
AlwI	GGATC	3 cut(s)	77, 90, 1090
AlwNI	CAGNNNCTG	1 cut(s)	1085
Ama87I	CYCGRG	1 cut(s)	76
AoxI	GGCC	3 cut(s)	151, 883, 995
ApoI	RAATTY	4 cut(s)	360, 414, 457, 1184
AspLEI	GCGC	1 cut(s)	1308
AspS9I	GGNCC	2 cut(s)	920, 1145
AsuHPI	GGTGA	2 cut(s)	770, 968
AsuII	TTCGAA	2 cut(s)	757, 865
AvaI	CYCGRG	1 cut(s)	76
AvaII	GGWCC	2 cut(s)	920, 1145
BaeGI	GKGCMC	1 cut(s)	986
BalI	TGGCCA	1 cut(s)	997
BamHI	GGATCC	1 cut(s)	82
BarI	GAAGNNNNNNTAC	2 cut(s)	751, 783
BbsI	GAAGAC	1 cut(s)	68
Bbv12I	GWGCWC	1 cut(s)	544
BccI	CCATC	2 cut(s)	845, 947
BceAI	ACGGC	1 cut(s)	870
BciT130I	CCWGG	2 cut(s)	189, 1080
BclI	TGATCA	2 cut(s)	283, 346
BcoDI	GTCTC	4 cut(s)	385, 1045, 1078, 1361
BfaI	CTAG	1 cut(s)	1371
BfmI	CTRYAG	2 cut(s)	783, 1156
BglII	AGATCT	2 cut(s)	761, 1373
Bme1390I	CCNGG	2 cut(s)	189, 1080
Bme18I	GGWCC	2 cut(s)	920, 1145
BmeT110I	CYCGRG	1 cut(s)	76
BmgT120I	GGNCC	2 cut(s)	920, 1145
BmiI	GGNNCC	1 cut(s)	84
BmrFI	CCNGG	2 cut(s)	189, 1080
BmsI	GCATC	5 cut(s)	46, 191, 568, 628, 1326
BoxI	GACNNNNGTC	1 cut(s)	1057
BpiI	GAAGAC	1 cut(s)	68
BpmI	CTGGAG	1 cut(s)	1062
Bpu14I	TTCGAA	2 cut(s)	757, 865
BpuEI	CTTGAG	1 cut(s)	1385
BsaBI	GATNNNNATC	2 cut(s)	480, 750
BsaI	GGTCTC	1 cut(s)	1045
BsaJI	CCNNGG	4 cut(s)	77, 187, 263, 595
BsaXI	ACNNNNNCTCC	2 cut(s)	1000, 1030
Bsc4I	CCNNNNNNNGG	1 cut(s)	1004
Bse1I	ACTGG	2 cut(s)	741, 923
Bse3DI	GCAATG	1 cut(s)	500
Bse8I	GATNNNNATC	2 cut(s)	480, 750
BseBI	CCWGG	2 cut(s)	189, 1080
BseDI	CCNNGG	4 cut(s)	77, 187, 263, 595
BseGI	GGATG	5 cut(s)	182, 481, 526, 958, 1344
BseJI	GATNNNNATC	2 cut(s)	480, 750
BseLI	CCNNNNNNNGG	1 cut(s)	1004
BseMI	GCAATG	1 cut(s)	500
BseMII	CTCAG	2 cut(s)	1047, 1128
BseNI	ACTGG	2 cut(s)	741, 923
BseRI	GAGGAG	3 cut(s)	252, 818, 1035
BseSI	GKGCMC	1 cut(s)	986
BshFI	GGCC	3 cut(s)	153, 885, 997
BsiHKAI	GWGCWC	1 cut(s)	544
BsiHKCI	CYCGRG	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	1 cut(s)	1004
BsmAI	GTCTC	4 cut(s)	385, 1045, 1078, 1361
BsmFI	GGGAC	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	3 cut(s)	153, 885, 997
Bso31I	GGTCTC	1 cut(s)	1045
BsoBI	CYCGRG	1 cut(s)	76
Bsp119I	TTCGAA	2 cut(s)	757, 865
Bsp1286I	GDGCHC	2 cut(s)	544, 986
Bsp143I	GATC	8 cut(s)	82, 283, 346, 751, 761, 1082, 1140, 1373
Bsp19I	CCATGG	1 cut(s)	595
BspANI	GGCC	3 cut(s)	153, 885, 997
BspCNI	CTCAG	2 cut(s)	1048, 1129
BspHI	TCATGA	2 cut(s)	37, 1111
BspLI	GGNNCC	1 cut(s)	84
BspMAI	CTGCAG	1 cut(s)	1160
BspPI	GGATC	3 cut(s)	77, 90, 1090
BspQI	GCTCTTC	1 cut(s)	1307
BspT104I	TTCGAA	2 cut(s)	757, 865
BspTNI	GGTCTC	1 cut(s)	1045
BsrDI	GCAATG	1 cut(s)	500
BsrI	ACTGG	2 cut(s)	741, 923
BssECI	CCNNGG	4 cut(s)	77, 187, 263, 595
BssMI	GATC	8 cut(s)	82, 283, 346, 751, 761, 1082, 1140, 1373
BssT1I	CCWWGG	1 cut(s)	595
Bst2UI	CCWGG	2 cut(s)	189, 1080
Bst4CI	ACNGT	3 cut(s)	204, 674, 947
Bst6I	CTCTTC	1 cut(s)	1307
BstBI	TTCGAA	2 cut(s)	757, 865
BstC8I	GCNNGC	6 cut(s)	313, 823, 986, 1130, 1267, 1281
BstDEI	CTNAG	3 cut(s)	293, 1056, 1137
BstDSI	CCRYGG	1 cut(s)	595
BstF5I	GGATG	5 cut(s)	182, 481, 526, 958, 1344
BstHHI	GCGC	1 cut(s)	1308
BstKTI	GATC	8 cut(s)	85, 286, 349, 754, 764, 1085, 1143, 1376
BstMAI	GTCTC	4 cut(s)	385, 1045, 1078, 1361
BstMBI	GATC	8 cut(s)	82, 283, 346, 751, 761, 1082, 1140, 1373
BstMWI	GCNNNNNNNGC	3 cut(s)	65, 994, 1314
BstNI	CCWGG	2 cut(s)	189, 1080
BstPAI	GACNNNNGTC	1 cut(s)	1057
BstSCI	CCNGG	2 cut(s)	187, 1078
BstSFI	CTRYAG	2 cut(s)	783, 1156
BstSLI	GKGCMC	1 cut(s)	986
BstV2I	GAAGAC	1 cut(s)	68
BstX2I	RGATCY	4 cut(s)	82, 761, 1082, 1373
BstYI	RGATCY	4 cut(s)	82, 761, 1082, 1373
BsuRI	GGCC	3 cut(s)	153, 885, 997
BtgI	CCRYGG	1 cut(s)	595
BtgZI	GCGATG	1 cut(s)	1413
BtsCI	GGATG	5 cut(s)	182, 481, 526, 958, 1344
BtsIMutI	CAGTG	2 cut(s)	748, 952
Cac8I	GCNNGC	6 cut(s)	313, 823, 986, 1130, 1267, 1281
CaiI	CAGNNNCTG	1 cut(s)	1085
CciI	TCATGA	2 cut(s)	37, 1111
CfoI	GCGC	1 cut(s)	1308
Cfr13I	GGNCC	2 cut(s)	920, 1145
Csp6I	GTAC	1 cut(s)	606
CspCI	CAANNNNNGTGG	2 cut(s)	382, 417
CviAII	CATG	8 cut(s)	29, 38, 350, 384, 448, 596, 1112, 1200
CviQI	GTAC	1 cut(s)	606
DdeI	CTNAG	3 cut(s)	293, 1056, 1137
DpnI	GATC	8 cut(s)	84, 285, 348, 753, 763, 1084, 1142, 1375
DpnII	GATC	8 cut(s)	82, 283, 346, 751, 761, 1082, 1140, 1373
DraI	TTTAAA	1 cut(s)	1209
EaeI	YGGCCR	2 cut(s)	883, 995
Eam1104I	CTCTTC	1 cut(s)	1307
EarI	CTCTTC	1 cut(s)	1307
Eco130I	CCWWGG	1 cut(s)	595
Eco147I	AGGCCT	1 cut(s)	153
Eco31I	GGTCTC	1 cut(s)	1045
Eco47I	GGWCC	2 cut(s)	920, 1145
Eco57I	CTGAAG	1 cut(s)	303
Eco88I	CYCGRG	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	187, 1078
EcoT14I	CCWWGG	1 cut(s)	595
ErhI	CCWWGG	1 cut(s)	595
FaeI	CATG	8 cut(s)	32, 41, 353, 387, 451, 599, 1115, 1203
FalI	AAGNNNNNCTT	2 cut(s)	1107, 1139
FaqI	GGGAC	1 cut(s)	486
FatI	CATG	8 cut(s)	28, 37, 349, 383, 447, 595, 1111, 1199
FbaI	TGATCA	2 cut(s)	283, 346
FokI	GGATG	5 cut(s)	169, 488, 533, 965, 1331
FspBI	CTAG	1 cut(s)	1371
GlaI	GCGC	1 cut(s)	1307
GsuI	CTGGAG	1 cut(s)	1062
HaeIII	GGCC	3 cut(s)	153, 885, 997
HhaI	GCGC	1 cut(s)	1308
Hin1II	CATG	8 cut(s)	32, 41, 353, 387, 451, 599, 1115, 1203
Hin6I	GCGC	1 cut(s)	1306
HinP1I	GCGC	1 cut(s)	1306
HincII	GTYRAC	2 cut(s)	465, 670
HindII	GTYRAC	2 cut(s)	465, 670
HindIII	AAGCTT	3 cut(s)	938, 1267, 1277
HphI	GGTGA	2 cut(s)	770, 968
Hpy166II	GTNNAC	3 cut(s)	443, 465, 670
Hpy188III	TCNNGA	8 cut(s)	38, 168, 221, 503, 518, 617, 1112, 1321
Hpy8I	GTNNAC	3 cut(s)	443, 465, 670
HpyAV	CCTTC	3 cut(s)	646, 861, 1162
HpyCH4III	ACNGT	3 cut(s)	204, 674, 947
HpyCH4IV	ACGT	2 cut(s)	255, 1354
HpyCH4V	TGCA	7 cut(s)	73, 158, 311, 581, 641, 1132, 1158
HpyF10VI	GCNNNNNNNGC	3 cut(s)	65, 994, 1314
HpyF3I	CTNAG	3 cut(s)	293, 1056, 1137
HpySE526I	ACGT	2 cut(s)	255, 1354
Hsp92II	CATG	8 cut(s)	32, 41, 353, 387, 451, 599, 1115, 1203
HspAI	GCGC	1 cut(s)	1306
Ksp22I	TGATCA	2 cut(s)	283, 346
Kzo9I	GATC	8 cut(s)	82, 283, 346, 751, 761, 1082, 1140, 1373
LguI	GCTCTTC	1 cut(s)	1307
LmnI	GCTCC	2 cut(s)	547, 1022
LweI	GCATC	5 cut(s)	46, 191, 568, 628, 1326
MaeI	CTAG	1 cut(s)	1371
MaeII	ACGT	2 cut(s)	255, 1354
MaeIII	GTNAC	1 cut(s)	766
MalI	GATC	8 cut(s)	84, 285, 348, 753, 763, 1084, 1142, 1375
MboI	GATC	8 cut(s)	82, 283, 346, 751, 761, 1082, 1140, 1373
MboII	GAAGA	6 cut(s)	73, 346, 746, 771, 1324, 1368
MfeI	CAATTG	2 cut(s)	159, 1038
MflI	RGATCY	4 cut(s)	82, 761, 1082, 1373
MhlI	GDGCHC	2 cut(s)	544, 986
MlsI	TGGCCA	1 cut(s)	997
MluCI	AATT	9 cut(s)	159, 323, 360, 414, 457, 556, 1038, 1184, 1389
MluNI	TGGCCA	1 cut(s)	997
MlyI	GAGTC	4 cut(s)	158, 226, 1067, 1400
MmeI	TCCRAC	2 cut(s)	651, 1142
Mox20I	TGGCCA	1 cut(s)	997
MscI	TGGCCA	1 cut(s)	997
MseI	TTAA	5 cut(s)	146, 611, 657, 1208, 1287
MslI	CAYNNNNRTG	2 cut(s)	137, 1110
Msp20I	TGGCCA	1 cut(s)	997
MspR9I	CCNGG	2 cut(s)	189, 1080
MunI	CAATTG	2 cut(s)	159, 1038
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	2 cut(s)	189, 1080
MwoI	GCNNNNNNNGC	3 cut(s)	65, 994, 1314
NcoI	CCATGG	1 cut(s)	595
NdeII	GATC	8 cut(s)	82, 283, 346, 751, 761, 1082, 1140, 1373
NlaIII	CATG	8 cut(s)	32, 41, 353, 387, 451, 599, 1115, 1203
NlaIV	GGNNCC	1 cut(s)	84
NspV	TTCGAA	2 cut(s)	757, 865
PagI	TCATGA	2 cut(s)	37, 1111
PceI	AGGCCT	1 cut(s)	153
PciSI	GCTCTTC	1 cut(s)	1307
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	9 cut(s)	125, 211, 430, 587, 662, 680, 704, 959, 1229
PfoI	TCCNGGA	1 cut(s)	1078
PleI	GAGTC	4 cut(s)	158, 225, 1066, 1400
PpsI	GAGTC	4 cut(s)	158, 225, 1066, 1400
PshAI	GACNNNNGTC	1 cut(s)	1057
Psp6I	CCWGG	2 cut(s)	187, 1078
PspGI	CCWGG	2 cut(s)	187, 1078
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	920, 1145
PstI	CTGCAG	1 cut(s)	1160
PstNI	CAGNNNCTG	1 cut(s)	1085
PsuI	RGATCY	4 cut(s)	82, 761, 1082, 1373
RsaI	GTAC	1 cut(s)	607
RsaNI	GTAC	1 cut(s)	606
RseI	CAYNNNNRTG	2 cut(s)	137, 1110
SapI	GCTCTTC	1 cut(s)	1307
SaqAI	TTAA	5 cut(s)	146, 611, 657, 1208, 1287
Sau3AI	GATC	8 cut(s)	82, 283, 346, 751, 761, 1082, 1140, 1373
Sau96I	GGNCC	2 cut(s)	920, 1145
SchI	GAGTC	4 cut(s)	158, 226, 1067, 1400
ScrFI	CCNGG	2 cut(s)	189, 1080
SduI	GDGCHC	2 cut(s)	544, 986
SfaNI	GCATC	5 cut(s)	46, 191, 568, 628, 1326
SfcI	CTRYAG	2 cut(s)	783, 1156
SfuI	TTCGAA	2 cut(s)	757, 865
SinI	GGWCC	2 cut(s)	920, 1145
SmiMI	CAYNNNNRTG	2 cut(s)	137, 1110
SmlI	CTYRAG	1 cut(s)	1364
SmoI	CTYRAG	1 cut(s)	1364
Sse9I	AATT	9 cut(s)	159, 323, 360, 414, 457, 556, 1038, 1184, 1389
SseBI	AGGCCT	1 cut(s)	153
SspI	AATATT	1 cut(s)	831
SspMI	CTAG	1 cut(s)	1371
StuI	AGGCCT	1 cut(s)	153
StyD4I	CCNGG	2 cut(s)	187, 1078
StyI	CCWWGG	1 cut(s)	595
TaaI	ACNGT	3 cut(s)	204, 674, 947
TaiI	ACGT	2 cut(s)	258, 1357
TaqI	TCGA	4 cut(s)	20, 602, 757, 865
TaqII	GACCGA	1 cut(s)	1133
TasI	AATT	9 cut(s)	159, 323, 360, 414, 457, 556, 1038, 1184, 1389
TatI	WGTACW	1 cut(s)	605
TfiI	GAWTC	9 cut(s)	125, 211, 430, 587, 662, 680, 704, 959, 1229
Tru1I	TTAA	5 cut(s)	146, 611, 657, 1208, 1287
Tru9I	TTAA	5 cut(s)	146, 611, 657, 1208, 1287
TscAI	CASTG	2 cut(s)	748, 952
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	2 cut(s)	748, 952
VpaK11BI	GGWCC	2 cut(s)	920, 1145
XapI	RAATTY	4 cut(s)	360, 414, 457, 1184
XspI	CTAG	1 cut(s)	1371

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.