Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0004237

Physical Location & Seq

Genomic Coordinates Reverse (-)

10965784 .. 10975321

Gene Structure 9538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG129600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGGCAACTAGGACATCTGATGATCATCGAGTCAAGAGAATTCGTACTGGCCATTCTGTCACATGCTTAACCAACACACATGAAAACAATCAAATCTTCAAACCACAGCCTGTCTGTAACTCAAACAGTTCTGGAAGTTTGTTGACAATTGAGGATGAATATAAACTGAAGCCAGCTTATGATTTGACCATTCTGGATGATATGAGAAAATATGGTCCGTCCTGCAAAATTTATCCTGCCTCCTTAATGGATACCGATGGATCAGGCCATGGTTGGACCATTGTAGATGATATGGAACAATATGGTAACTCCTGCAAGGAGTTTTCTACCTCTGCCTTAATTGATAAAGATGAGTCAGCCCATGGTTCAAACAAGTTGACTCCAGAATACTCCAACCTTTGTAATGCAACCTCTAAGAATGTTAATGATTCAGTCGATAGTTTGGATTCTTCAAGTTTAGATGAGTGTGATTCAGAACTCGAAAGAGCTTTGAGGTTATTGATTTCCAGTGATGATGATCTTCCAAGATCTACTCCTTCAGCTCACTCTTCAGCTTCACTGAGGTCGAGCAATAGAAATTCAAAGGCTGCAGAAATATTGAGATTGCTCTTCTCAGATGGTCAGTACTTTCGAAAGTCTGTTCCAATTGGGCCTGGTTTTCAGGCTGAAGTTCCTGAGTGGAGAGGTCCTGTCAATAGGAAAAATCGTTACGTTGGTAATGTTTCAAAGAAGTGGTTGGGCACTCGAATGTATCCCATCAAACGGTTAAAAAATGCAGGAGCTGATACAAAATCGATTGGGAAGGGGAGACCTGACTCTTGTTCTTGTGTCTCTCCTGGATCTGCTGGTTGTGTCAAACACCACATCGATGAAGCGAGACTCCGTTTGCAAGCTGAAATTGGTCCTGCATTCCGGACTTGGAAGTTTGATGAAATGGGAGAATTTGCCTCGAAGTCATGGACTTTGAAAGAACAAAGTACCTTCGAATCTCTAGTGAGAAAGAATCCGCTATCAAATGAAGCAAGCTTTTGGAAGCTTGCCTTTAATCGTTTTCCTAATAAATGCAGGAAAAGCGTTGTGAGTTATTACAATAACGTGTTCATAACTAGACGCCTGAGCCTCCAGACTAGGTCTTCTGTTGATGAAATTGATAGTGATGATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ELM2

Protein Analysis

388

Amino Acids

43.44

Weight (kDa)

8.23

Isoelectric Point (pI)

42.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004237)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g12001 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700 FvH4_6g16700
malus_domestica	MD04G1147000.v1.1 MD12G1160300.v1.1
prunus_persica	Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1 Prupe.6G270800_v2.0.a1
pyrus_communis	pycom04g13280 pycom12g15210
rosa_chinensis	RchiOBHm_Chr3g0463841 RchiOBHm_Chr3g0470651
rosa_laevigata	RLG00000024250 RLG00000024752
rosa_multiflora	Rmu_co8471153.1_g000001 Rmu_sc0004796.1_g000007
rosa_roxburghii	Rroxscaffold_6G00410630
rosa_rugosa	Rorug03G0068200 Rorug03G0068300 Rorug03G0111300 Rorug03G0111400
rosa_samantha	Rh3AG125500 Rh3AG161000 Rh3BG129600 Rh3BG185600 Rh3CG132100 Rh3CG175900 Rh3DG189200
rosa_wichuraiana	Rw3G010590 Rw3G015230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	912
AciI	CCGC	1 cut(s)	1007
AclWI	GGATC	2 cut(s)	268, 847
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	4 cut(s)	39, 228, 577, 941
AcuI	CTGAAG	4 cut(s)	188, 522, 534, 687
AcyI	GRCGYC	1 cut(s)	1111
AfaI	GTAC	3 cut(s)	46, 626, 979
AfiI	CCNNNNNNNGG	1 cut(s)	762
AflIII	ACRYGT	1 cut(s)	1095
AgsI	TTSAA	6 cut(s)	100, 369, 453, 582, 726, 967
AjnI	CCWGG	2 cut(s)	652, 835
AluBI	AGCT	8 cut(s)	176, 488, 542, 554, 782, 893, 1026, 1036
AluI	AGCT	8 cut(s)	176, 488, 542, 554, 782, 893, 1026, 1036
Alw26I	GTCTC	3 cut(s)	802, 835, 871
AlwI	GGATC	2 cut(s)	268, 847
AlwNI	CAGNNNCTG	1 cut(s)	782
Aor13HI	TCCGGA	1 cut(s)	912
AoxI	GGCC	3 cut(s)	49, 265, 650
ApeKI	GCWGC	1 cut(s)	587
ApoI	RAATTY	4 cut(s)	39, 228, 577, 941
AspS9I	GGNCC	5 cut(s)	215, 276, 650, 686, 902
AsuII	TTCGAA	2 cut(s)	631, 984
AvaII	GGWCC	4 cut(s)	215, 276, 686, 902
BaeGI	GKGCMC	1 cut(s)	743
BalI	TGGCCA	1 cut(s)	51
BbsI	GAAGAC	1 cut(s)	1125
BbvI	GCAGC	1 cut(s)	574
BccI	CCATC	3 cut(s)	251, 611, 764
BciT130I	CCWGG	2 cut(s)	654, 837
BciVI	GTATCC	2 cut(s)	244, 762
BclI	TGATCA	1 cut(s)	22
BcoDI	GTCTC	3 cut(s)	802, 835, 871
BfaI	CTAG	5 cut(s)	9, 992, 1107, 1128, 1165
BfmI	CTRYAG	1 cut(s)	588
BfuI	GTATCC	2 cut(s)	244, 762
BglII	AGATCT	1 cut(s)	527
BisI	GCNGC	1 cut(s)	588
BlsI	GCNGC	1 cut(s)	589
BmcAI	AGTACT	1 cut(s)	626
Bme1390I	CCNGG	2 cut(s)	654, 837
Bme18I	GGWCC	4 cut(s)	215, 276, 686, 902
BmgT120I	GGNCC	5 cut(s)	215, 276, 650, 686, 902
BmrFI	CCNGG	2 cut(s)	654, 837
BpiI	GAAGAC	1 cut(s)	1125
BpmI	CTGGAG	2 cut(s)	366, 1106
Bpu10I	CCTNAGC	1 cut(s)	1115
Bpu14I	TTCGAA	2 cut(s)	631, 984
Bsa29I	ATCGAT	2 cut(s)	794, 867
BsaBI	GATNNNNATC	2 cut(s)	24, 516
BsaHI	GRCGYC	1 cut(s)	1111
BsaI	GGTCTC	1 cut(s)	802
BsaJI	CCNNGG	2 cut(s)	268, 361
BsaWI	WCCGGW	1 cut(s)	912
Bsc4I	CCNNNNNNNGG	1 cut(s)	762
Bse1I	ACTGG	2 cut(s)	52, 507
Bse8I	GATNNNNATC	2 cut(s)	24, 516
BseAI	TCCGGA	1 cut(s)	912
BseBI	CCWGG	2 cut(s)	654, 837
BseCI	ATCGAT	2 cut(s)	794, 867
BseDI	CCNNGG	2 cut(s)	268, 361
BseGI	GGATG	2 cut(s)	160, 202
BseJI	GATNNNNATC	2 cut(s)	24, 516
BseLI	CCNNNNNNNGG	1 cut(s)	762
BseMII	CTCAG	4 cut(s)	551, 627, 666, 1106
BseNI	ACTGG	2 cut(s)	52, 507
BseSI	GKGCMC	1 cut(s)	743
BseXI	GCAGC	1 cut(s)	574
BshFI	GGCC	3 cut(s)	51, 267, 652
BshVI	ATCGAT	2 cut(s)	794, 867
BsiSI	CCGG	1 cut(s)	913
BslI	CCNNNNNNNGG	1 cut(s)	762
BsmAI	GTCTC	3 cut(s)	802, 835, 871
BsmI	GAATGC	1 cut(s)	908
BsnI	GGCC	3 cut(s)	51, 267, 652
Bso31I	GGTCTC	1 cut(s)	802
Bsp119I	TTCGAA	2 cut(s)	631, 984
Bsp1286I	GDGCHC	1 cut(s)	743
Bsp13I	TCCGGA	1 cut(s)	912
Bsp143I	GATC	5 cut(s)	22, 260, 517, 527, 839
Bsp19I	CCATGG	2 cut(s)	268, 361
BspACI	CCGC	1 cut(s)	1007
BspANI	GGCC	3 cut(s)	51, 267, 652
BspCNI	CTCAG	4 cut(s)	552, 626, 667, 1107
BspDI	ATCGAT	2 cut(s)	794, 867
BspEI	TCCGGA	1 cut(s)	912
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	2 cut(s)	268, 847
BspQI	GCTCTTC	1 cut(s)	614
BspT104I	TTCGAA	2 cut(s)	631, 984
BspTNI	GGTCTC	1 cut(s)	802
BsrI	ACTGG	2 cut(s)	52, 507
BssECI	CCNNGG	2 cut(s)	268, 361
BssMI	GATC	5 cut(s)	22, 260, 517, 527, 839
BssNI	GRCGYC	1 cut(s)	1111
BssT1I	CCWWGG	2 cut(s)	268, 361
Bst2UI	CCWGG	2 cut(s)	654, 837
Bst4CI	ACNGT	2 cut(s)	128, 765
Bst6I	CTCTTC	2 cut(s)	553, 614
BstACI	GRCGYC	1 cut(s)	1111
BstBI	TTCGAA	2 cut(s)	631, 984
BstC8I	GCNNGC	4 cut(s)	174, 891, 1024, 1038
BstDEI	CTNAG	5 cut(s)	414, 560, 613, 675, 1115
BstDSI	CCRYGG	2 cut(s)	268, 361
BstF5I	GGATG	2 cut(s)	160, 202
BstKTI	GATC	5 cut(s)	25, 263, 520, 530, 842
BstMAI	GTCTC	3 cut(s)	802, 835, 871
BstMBI	GATC	5 cut(s)	22, 260, 517, 527, 839
BstMWI	GCNNNNNNNGC	1 cut(s)	1071
BstNI	CCWGG	2 cut(s)	654, 837
BstNSI	RCATGY	1 cut(s)	66
BstSCI	CCNGG	2 cut(s)	652, 835
BstSFI	CTRYAG	1 cut(s)	588
BstSLI	GKGCMC	1 cut(s)	743
BstV1I	GCAGC	1 cut(s)	574
BstV2I	GAAGAC	1 cut(s)	1125
BstX2I	RGATCY	2 cut(s)	527, 839
BstYI	RGATCY	2 cut(s)	527, 839
Bsu15I	ATCGAT	2 cut(s)	794, 867
BsuI	GTATCC	2 cut(s)	244, 762
BsuRI	GGCC	3 cut(s)	51, 267, 652
BsuTUI	ATCGAT	2 cut(s)	794, 867
BtgI	CCRYGG	2 cut(s)	268, 361
BtsCI	GGATG	2 cut(s)	160, 202
BtsIMutI	CAGTG	2 cut(s)	514, 557
Cac8I	GCNNGC	4 cut(s)	174, 891, 1024, 1038
CaiI	CAGNNNCTG	1 cut(s)	782
Cfr13I	GGNCC	5 cut(s)	215, 276, 650, 686, 902
ClaI	ATCGAT	2 cut(s)	794, 867
CseI	GACGC	1 cut(s)	1119
Csp6I	GTAC	3 cut(s)	45, 625, 978
CviAII	CATG	5 cut(s)	63, 80, 269, 362, 957
CviQI	GTAC	3 cut(s)	45, 625, 978
DdeI	CTNAG	5 cut(s)	414, 560, 613, 675, 1115
DpnI	GATC	5 cut(s)	24, 262, 519, 529, 841
DpnII	GATC	5 cut(s)	22, 260, 517, 527, 839
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	2 cut(s)	553, 614
EarI	CTCTTC	2 cut(s)	553, 614
Eco130I	CCWWGG	2 cut(s)	268, 361
Eco31I	GGTCTC	1 cut(s)	802
Eco47I	GGWCC	4 cut(s)	215, 276, 686, 902
Eco57I	CTGAAG	4 cut(s)	188, 522, 534, 687
EcoO109I	RGGNCCY	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	39
EcoRII	CCWGG	2 cut(s)	652, 835
EcoT14I	CCWWGG	2 cut(s)	268, 361
ErhI	CCWWGG	2 cut(s)	268, 361
FaeI	CATG	5 cut(s)	66, 83, 272, 365, 960
FalI	AAGNNNNNCTT	2 cut(s)	1025, 1057
FatI	CATG	5 cut(s)	62, 79, 268, 361, 956
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	588
FokI	GGATG	2 cut(s)	167, 209
Fsp4HI	GCNGC	1 cut(s)	588
FspBI	CTAG	5 cut(s)	9, 992, 1107, 1128, 1165
GluI	GCNGC	1 cut(s)	588
GsuI	CTGGAG	2 cut(s)	366, 1106
HaeIII	GGCC	3 cut(s)	51, 267, 652
HapII	CCGG	1 cut(s)	913
HgaI	GACGC	1 cut(s)	1119
Hin1I	GRCGYC	1 cut(s)	1111
Hin1II	CATG	5 cut(s)	66, 83, 272, 365, 960
HincII	GTYRAC	2 cut(s)	144, 378
HindII	GTYRAC	2 cut(s)	144, 378
HindIII	AAGCTT	2 cut(s)	1024, 1034
HpaII	CCGG	1 cut(s)	913
Hpy166II	GTNNAC	2 cut(s)	144, 378
Hpy188I	TCNGA	3 cut(s)	19, 475, 616
Hpy188III	TCNNGA	7 cut(s)	34, 132, 194, 383, 674, 913, 1123
Hpy8I	GTNNAC	2 cut(s)	144, 378
HpyAV	CCTTC	3 cut(s)	546, 796, 991
HpyCH4III	ACNGT	2 cut(s)	128, 765
HpyCH4IV	ACGT	2 cut(s)	711, 1095
HpyCH4V	TGCA	8 cut(s)	225, 315, 407, 590, 776, 889, 908, 1065
HpyF10VI	GCNNNNNNNGC	1 cut(s)	1071
HpyF3I	CTNAG	5 cut(s)	414, 560, 613, 675, 1115
HpySE526I	ACGT	2 cut(s)	711, 1095
Hsp92I	GRCGYC	1 cut(s)	1111
Hsp92II	CATG	5 cut(s)	66, 83, 272, 365, 960
Kpn2I	TCCGGA	1 cut(s)	912
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	5 cut(s)	22, 260, 517, 527, 839
LguI	GCTCTTC	1 cut(s)	614
LmnI	GCTCC	1 cut(s)	779
Lsp1109I	GCAGC	1 cut(s)	574
MaeI	CTAG	5 cut(s)	9, 992, 1107, 1128, 1165
MaeII	ACGT	2 cut(s)	711, 1095
MaeIII	GTNAC	4 cut(s)	58, 116, 305, 707
MalI	GATC	5 cut(s)	24, 262, 519, 529, 841
MboI	GATC	5 cut(s)	22, 260, 517, 527, 839
MboII	GAAGA	6 cut(s)	88, 441, 512, 540, 601, 1125
MfeI	CAATTG	2 cut(s)	147, 645
MflI	RGATCY	2 cut(s)	527, 839
MhlI	GDGCHC	1 cut(s)	743
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	9 cut(s)	39, 147, 228, 339, 577, 645, 897, 941, 1146
MluNI	TGGCCA	1 cut(s)	51
MlyI	GAGTC	5 cut(s)	39, 362, 373, 809, 873
MmeI	TCCRAC	2 cut(s)	254, 417
MnlI	CCTC	9 cut(s)	145, 250, 340, 421, 486, 555, 677, 958, 1130
Mox20I	TGGCCA	1 cut(s)	51
MroI	TCCGGA	1 cut(s)	912
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	6 cut(s)	68, 245, 338, 423, 767, 1044
MslI	CAYNNNNRTG	2 cut(s)	746, 867
Msp20I	TGGCCA	1 cut(s)	51
MspI	CCGG	1 cut(s)	913
MspR9I	CCNGG	2 cut(s)	654, 837
MunI	CAATTG	2 cut(s)	147, 645
Mva1269I	GAATGC	1 cut(s)	908
MvaI	CCWGG	2 cut(s)	654, 837
MwoI	GCNNNNNNNGC	1 cut(s)	1071
NcoI	CCATGG	2 cut(s)	268, 361
NdeII	GATC	5 cut(s)	22, 260, 517, 527, 839
NlaIII	CATG	5 cut(s)	66, 83, 272, 365, 960
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	66
NspV	TTCGAA	2 cut(s)	631, 984
PciSI	GCTCTTC	1 cut(s)	614
PctI	GAATGC	1 cut(s)	908
PfeI	GAWTC	5 cut(s)	428, 446, 470, 986, 1003
PflFI	GACNNNGTC	1 cut(s)	1129
PfoI	TCCNGGA	1 cut(s)	835
PkrI	GCNGC	1 cut(s)	589
PleI	GAGTC	5 cut(s)	38, 361, 373, 809, 873
PpsI	GAGTC	5 cut(s)	38, 361, 373, 809, 873
PpuMI	RGGWCCY	1 cut(s)	686
Psp5II	RGGWCCY	1 cut(s)	686
Psp6I	CCWGG	2 cut(s)	652, 835
PspGI	CCWGG	2 cut(s)	652, 835
PspPI	GGNCC	5 cut(s)	215, 276, 650, 686, 902
PspPPI	RGGWCCY	1 cut(s)	686
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	782
PsuI	RGATCY	2 cut(s)	527, 839
PsyI	GACNNNGTC	1 cut(s)	1129
RsaI	GTAC	3 cut(s)	46, 626, 979
RsaNI	GTAC	3 cut(s)	45, 625, 978
RseI	CAYNNNNRTG	2 cut(s)	746, 867
SapI	GCTCTTC	1 cut(s)	614
SaqAI	TTAA	6 cut(s)	68, 245, 338, 423, 767, 1044
SatI	GCNGC	1 cut(s)	588
Sau3AI	GATC	5 cut(s)	22, 260, 517, 527, 839
Sau96I	GGNCC	5 cut(s)	215, 276, 650, 686, 902
ScaI	AGTACT	1 cut(s)	626
SchI	GAGTC	5 cut(s)	39, 362, 373, 809, 873
ScrFI	CCNGG	2 cut(s)	654, 837
SduI	GDGCHC	1 cut(s)	743
SfcI	CTRYAG	1 cut(s)	588
SfuI	TTCGAA	2 cut(s)	631, 984
SinI	GGWCC	4 cut(s)	215, 276, 686, 902
SmiMI	CAYNNNNRTG	2 cut(s)	746, 867
Sse9I	AATT	9 cut(s)	39, 147, 228, 339, 577, 645, 897, 941, 1146
SsiI	CCGC	1 cut(s)	1007
SspI	AATATT	1 cut(s)	597
SspMI	CTAG	5 cut(s)	9, 992, 1107, 1128, 1165
StyD4I	CCNGG	2 cut(s)	652, 835
StyI	CCWWGG	2 cut(s)	268, 361
TaaI	ACNGT	2 cut(s)	128, 765
TaiI	ACGT	2 cut(s)	714, 1098
TasI	AATT	9 cut(s)	39, 147, 228, 339, 577, 645, 897, 941, 1146
TatI	WGTACW	1 cut(s)	624
TfiI	GAWTC	5 cut(s)	428, 446, 470, 986, 1003
Tru1I	TTAA	6 cut(s)	68, 245, 338, 423, 767, 1044
Tru9I	TTAA	6 cut(s)	68, 245, 338, 423, 767, 1044
TscAI	CASTG	2 cut(s)	514, 564
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	587
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	7 cut(s)	96, 171, 885, 945, 1032, 1090, 1158
TspGWI	ACGGA	2 cut(s)	207, 872
TspRI	CASTG	2 cut(s)	514, 564
Tth111I	GACNNNGTC	1 cut(s)	1129
VpaK11BI	GGWCC	4 cut(s)	215, 276, 686, 902
XapI	RAATTY	4 cut(s)	39, 228, 577, 941
XceI	RCATGY	1 cut(s)	66
XspI	CTAG	5 cut(s)	9, 992, 1107, 1128, 1165
ZrmI	AGTACT	1 cut(s)	626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.