FvH4_6g12770

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
7736989 .. 7741233
4245 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g12770.t1

Sequence Viewer

Length: 1776 bp
ATGGAAGAGAGAAGGGGATCGACAAAATCGAGCAAGGAGGCAGCTGAAAATCAGGAGAAATGGGTTTATGATTCTTCTGTGGATCATAAAGGAAATGTTCCTCTCCGAGCTTCAACTGGTGTTTGGAAAGCCTCTCTCTTTATTGTGGCAATTGAGTTTAGTGAGAGGCTGAGTTACTTTGGAATAGCAACCAGTTTAATTATTTACCTTACCAAAGTAATTCACGAAGACCTCAAGAGTGCAGCAAAGAGTGTCAACTACTGGTCTGGTGTTACAACATTGATTCCACTCTTTGGAGGCTTCATAGCTGATGCTTATTTGGGTCGCTTCTCAACTGTTCTGGTCTCATCCATCATTTACCTCCTGGGTTTGATTCTTCTAACCATGTCCTGGTTTGTACCAAGCCTAAAGCCTTGTGACACACAACCATGCCTTGAAGCAAGAAAAATCCATGAAGTGGTATTCTTCCTAGCCATATACATGATCTCCATAGGAACTGGAGGCCATAAACCATCTTTGGAGAGCTTTGGAGCTGACCAATTCGATGATGATCACAGTGAAGAAAGAAAGCGAAAGATGTCATACTTCAATTGGTGGAACTTTGGACTTTGCTGTGGTCTTTTACTTGGGGTGACTCTGGTTGTCTACGTACAGGACCATGTCAGTTGGGGTATTGCAGATATAGTTCTCATGGCAGTCATGGCTACCTCACTGGTTATCTTCATTGTTGGCCGGCCGTATTACCGTTATCGAAGACCGACAGGGAGCCCCTTGACACCAATGCTGCAGGTTCTTGTAGCAGCCATTTCTAAGAGAAAGCTGCCATACCCTTCTGATACTGCTCAATTATATGAAATTTCCCAGTCGGAGAAGGTCCATGGGAGGCTTTTGTGCCACACCAACAAGCTCAAATTTCTTGACAAGGCTGCCATCGTAAGCACAGAAAGTTCAGCTGAGAAGCAAAATCCTTGGACTCTTGCAACTGTGACAAAGGTCGAGGAGATGAAACTAGTCCTTAACATTATCCCCATTTGGCTAGCCACCCTACCATTTGGAATTTGTGTAGCACAAGCCTCCACATTCTTCATCAAACAAGGTGTGGCCATGAACCGAAGCATCAGCAACAGTTTCGAGCTCCCCCCTGCCTCAATCTACTCTCTCGCAGCCATCGGAATGATCATATCCGTCACGTTCTACGAGAAAATCTTAGTCCCTGTACTGCGGAGAACAACGGGAAATGAGAGGGGGATCAACATCCTCCAGAGAATCGGAATCGGAATGCTCTTTTTAATCGGCACAATGGTAGCAGCTGCCTTGGTGGAGAAGAAAAGACTAGGGATTGTCGAGAAAGACCCTTTAAAGGGATCACATTCCATGAGTGTGTTCTGGTTAGCACCACAGTTTGTGATCATTGGATTTGGAGATGGGTTTACTCTTGTGGGTCTGCAAGAGTATTTCTACGACCAAGTCCCGGACTCCATGAGAAGCTTAGGAATTGCGTTTTACCTAAGTGTAATTGGAGCTGGGAATTTTCTTAGTAGCCTCTTGATCACGGCCATTGATCACATCACTGAGAAGAGAGGGAAGAGTTGGTTTGGTAAGGATTTGAATAGTAGTCGTTTGGACAAGTTTTACTGGCTCTTGGCTTGTATGACTGCAGCAAATTGGTGCGTCTATGTCTTCCTGGCTCGGCGTTACTCTTACAAGAATGTGCAGAAGGTAGCTGTGGCTGATTGCTATGACGGTGAAGTGGAAAATGGAGGTTCATTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

592

Amino Acids

65.87

Weight (kDa)

8.88

Isoelectric Point (pI)

39.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 58 - 513 2.9e-11 Major Facilitator Superfamily
PTR2 PF00854 110 - 527 5.6e-89 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 778
AccB7I CCANNNNNTGG 3 cut(s) 293, 390, 457
AccI GTMKAC 1 cut(s) 645
AciI CCGC 1 cut(s) 1222
AclWI GGATC 4 cut(s) 25, 90, 1256, 1372
AcoI YGGCCR 4 cut(s) 730, 734, 1101, 1554
AcsI RAATTY 4 cut(s) 855, 911, 1056, 1528
AfaI GTAC 3 cut(s) 399, 651, 1218
AfiI CCNNNNNNNGG 6 cut(s) 293, 390, 457, 1360, 1361, 1471
AgsI TTSAA 4 cut(s) 114, 437, 589, 1609
AhlI ACTAGT 1 cut(s) 1009
AjnI CCWGG 3 cut(s) 363, 389, 1683
Alw21I GWGCWC 1 cut(s) 1137
Alw26I GTCTC 1 cut(s) 349
AlwI GGATC 4 cut(s) 25, 90, 1256, 1372
AoxI GGCC 5 cut(s) 502, 730, 734, 1101, 1554
ApoI RAATTY 4 cut(s) 855, 911, 1056, 1528
AspS9I GGNCC 2 cut(s) 655, 874
AsuC2I CCSGG 1 cut(s) 1472
AsuHPI GGTGA 2 cut(s) 643, 1757
AsuNHI GCTAGC 1 cut(s) 1036
AvaII GGWCC 2 cut(s) 655, 874
BalI TGGCCA 1 cut(s) 1103
BanII GRGCYC 2 cut(s) 770, 1137
BbsI GAAGAC 3 cut(s) 234, 760, 1672
Bbv12I GWGCWC 1 cut(s) 1137
BccI CCATC 5 cut(s) 359, 520, 938, 1175, 1418
BceAI ACGGC 2 cut(s) 721, 1569
BcgI CGANNNNNNTGC 2 cut(s) 1111, 1145
BciT130I CCWGG 3 cut(s) 365, 391, 1685
BclI TGATCA 5 cut(s) 550, 1176, 1407, 1548, 1561
BcnI CCSGG 1 cut(s) 1472
BcoDI GTCTC 1 cut(s) 349
BcuI ACTAGT 1 cut(s) 1009
BfaI CTAG 4 cut(s) 470, 1010, 1037, 1334
BfmI CTRYAG 2 cut(s) 785, 1656
BfuAI ACCTGC 1 cut(s) 778
Bme1390I CCNGG 4 cut(s) 365, 391, 1472, 1685
Bme18I GGWCC 2 cut(s) 655, 874
BmgT120I GGNCC 2 cut(s) 655, 874
BmiI GGNNCC 1 cut(s) 767
BmrFI CCNGG 4 cut(s) 365, 391, 1472, 1685
BmrI ACTGGG 1 cut(s) 856
BmsI GCATC 2 cut(s) 301, 1125
BmtI GCTAGC 1 cut(s) 1040
BmuI ACTGGG 1 cut(s) 856
BoxI GACNNNNGTC 1 cut(s) 992
BpiI GAAGAC 3 cut(s) 234, 760, 1672
BpmI CTGGAG 2 cut(s) 519, 1244
Bpu10I CCTNAGC 1 cut(s) 1489
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 1472
BsaAI YACGTR 1 cut(s) 649
BsaBI GATNNNNATC 2 cut(s) 549, 1253
BsaI GGTCTC 1 cut(s) 349
BsaJI CCNNGG 4 cut(s) 364, 877, 968, 1314
BsaXI ACNNNNNCTCC 2 cut(s) 470, 500
Bsc4I CCNNNNNNNGG 6 cut(s) 293, 390, 457, 1360, 1361, 1471
Bse118I RCCGGY 1 cut(s) 732
Bse1I ACTGG 7 cut(s) 121, 192, 266, 502, 717, 862, 1640
Bse8I GATNNNNATC 2 cut(s) 549, 1253
BseBI CCWGG 3 cut(s) 365, 391, 1685
BseDI CCNNGG 4 cut(s) 364, 877, 968, 1314
BseGI GGATG 2 cut(s) 347, 1254
BseJI GATNNNNATC 2 cut(s) 549, 1253
BseLI CCNNNNNNNGG 6 cut(s) 293, 390, 457, 1360, 1361, 1471
BseMII CTCAG 3 cut(s) 161, 945, 1563
BseNI ACTGG 7 cut(s) 121, 192, 266, 502, 717, 862, 1640
BseRI GAGGAG 1 cut(s) 1013
BseX3I CGGCCG 1 cut(s) 734
BseYI CCCAGC 1 cut(s) 1523
BsgI GTGCAG 2 cut(s) 261, 1733
Bsh1285I CGRYCG 1 cut(s) 737
BshFI GGCC 5 cut(s) 504, 732, 736, 1103, 1556
BsiEI CGRYCG 1 cut(s) 737
BsiHKAI GWGCWC 1 cut(s) 1137
BsiSI CCGG 2 cut(s) 733, 1472
BslFI GGGAC 2 cut(s) 1196, 1454
BslI CCNNNNNNNGG 6 cut(s) 293, 390, 457, 1360, 1361, 1471
BsmAI GTCTC 1 cut(s) 349
BsmFI GGGAC 2 cut(s) 1196, 1454
BsmI GAATGC 1 cut(s) 1284
BsnI GGCC 5 cut(s) 504, 732, 736, 1103, 1556
Bso31I GGTCTC 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 770, 1137
Bsp19I CCATGG 1 cut(s) 877
BspACI CCGC 1 cut(s) 1222
BspANI GGCC 5 cut(s) 504, 732, 736, 1103, 1556
BspCNI CTCAG 3 cut(s) 162, 946, 1564
BspLI GGNNCC 1 cut(s) 767
BspMAI CTGCAG 2 cut(s) 789, 1660
BspMI ACCTGC 1 cut(s) 778
BspOI GCTAGC 1 cut(s) 1040
BspPI GGATC 4 cut(s) 25, 90, 1256, 1372
BspTNI GGTCTC 1 cut(s) 349
BsrFI RCCGGY 1 cut(s) 732
BsrI ACTGG 7 cut(s) 121, 192, 266, 502, 717, 862, 1640
BssAI RCCGGY 1 cut(s) 732
BssECI CCNNGG 4 cut(s) 364, 877, 968, 1314
BssT1I CCWWGG 3 cut(s) 877, 968, 1314
Bst2UI CCWGG 3 cut(s) 365, 391, 1685
Bst4CI ACNGT 7 cut(s) 337, 557, 746, 985, 1127, 1401, 1745
Bst6I CTCTTC 2 cut(s) 1571, 1580
BstBAI YACGTR 1 cut(s) 649
BstC8I GCNNGC 2 cut(s) 734, 1038
BstDEI CTNAG 8 cut(s) 170, 810, 954, 1207, 1489, 1508, 1535, 1572
BstDSI CCRYGG 1 cut(s) 877
BstF5I GGATG 2 cut(s) 347, 1254
BstMAI GTCTC 1 cut(s) 349
BstMCI CGRYCG 1 cut(s) 737
BstMWI GCNNNNNNNGC 1 cut(s) 701
BstNI CCWGG 3 cut(s) 365, 391, 1685
BstPAI GACNNNNGTC 1 cut(s) 992
BstSCI CCNGG 4 cut(s) 363, 389, 1470, 1683
BstSFI CTRYAG 2 cut(s) 785, 1656
BstSNI TACGTA 1 cut(s) 649
BstV2I GAAGAC 3 cut(s) 234, 760, 1672
BstZI CGGCCG 1 cut(s) 734
BsuRI GGCC 5 cut(s) 504, 732, 736, 1103, 1556
BtgI CCRYGG 1 cut(s) 877
BtsCI GGATG 2 cut(s) 347, 1254
BtsIMutI CAGTG 3 cut(s) 562, 710, 1569
BveI ACCTGC 1 cut(s) 778
Cac8I GCNNGC 2 cut(s) 734, 1038
Cfr10I RCCGGY 1 cut(s) 732
Cfr13I GGNCC 2 cut(s) 655, 874
CseI GACGC 1 cut(s) 1660
Csp6I GTAC 3 cut(s) 398, 650, 1217
CviQI GTAC 3 cut(s) 398, 650, 1217
DdeI CTNAG 8 cut(s) 170, 810, 954, 1207, 1489, 1508, 1535, 1572
DraI TTTAAA 1 cut(s) 1359
EaeI YGGCCR 4 cut(s) 730, 734, 1101, 1554
EagI CGGCCG 1 cut(s) 734
Eam1104I CTCTTC 2 cut(s) 1571, 1580
EarI CTCTTC 2 cut(s) 1571, 1580
Ecl136II GAGCTC 1 cut(s) 1135
EclXI CGGCCG 1 cut(s) 734
Eco105I TACGTA 1 cut(s) 649
Eco130I CCWWGG 3 cut(s) 877, 968, 1314
Eco24I GRGCYC 2 cut(s) 770, 1137
Eco31I GGTCTC 1 cut(s) 349
Eco47I GGWCC 2 cut(s) 655, 874
Eco52I CGGCCG 1 cut(s) 734
Eco53kI GAGCTC 1 cut(s) 1135
EcoICRI GAGCTC 1 cut(s) 1135
EcoRII CCWGG 3 cut(s) 363, 389, 1683
EcoT14I CCWWGG 3 cut(s) 877, 968, 1314
EcoT38I GRGCYC 2 cut(s) 770, 1137
ErhI CCWWGG 3 cut(s) 877, 968, 1314
FaqI GGGAC 2 cut(s) 1196, 1454
FbaI TGATCA 5 cut(s) 550, 1176, 1407, 1548, 1561
FblI GTMKAC 1 cut(s) 645
FokI GGATG 2 cut(s) 334, 1241
FriOI GRGCYC 2 cut(s) 770, 1137
FseI GGCCGGCC 1 cut(s) 736
FspBI CTAG 4 cut(s) 470, 1010, 1037, 1334
GsaI CCCAGC 1 cut(s) 1527
GsuI CTGGAG 2 cut(s) 519, 1244
HaeIII GGCC 5 cut(s) 504, 732, 736, 1103, 1556
HapII CCGG 2 cut(s) 733, 1472
HgaI GACGC 1 cut(s) 1660
HincII GTYRAC 1 cut(s) 256
HindII GTYRAC 1 cut(s) 256
HindIII AAGCTT 1 cut(s) 1486
HinfI GANTC 8 cut(s) 71, 283, 373, 634, 973, 1266, 1272, 1475
HpaII CCGG 2 cut(s) 733, 1472
HphI GGTGA 2 cut(s) 643, 1757
Hpy166II GTNNAC 3 cut(s) 256, 646, 1431
Hpy188I TCNGA 6 cut(s) 107, 835, 868, 1172, 1271, 1277
Hpy188III TCNNGA 7 cut(s) 53, 224, 235, 917, 1261, 1345, 1546
Hpy8I GTNNAC 3 cut(s) 256, 646, 1431
HpyAV CCTTC 4 cut(s) 6, 840, 865, 1711
HpyCH4III ACNGT 7 cut(s) 337, 557, 746, 985, 1127, 1401, 1745
HpyCH4IV ACGT 2 cut(s) 648, 1190
HpyCH4V TGCA 7 cut(s) 242, 677, 787, 980, 1447, 1658, 1714
HpyF10VI GCNNNNNNNGC 1 cut(s) 701
HpyF3I CTNAG 8 cut(s) 170, 810, 954, 1207, 1489, 1508, 1535, 1572
HpySE526I ACGT 2 cut(s) 648, 1190
KroI GCCGGC 1 cut(s) 732
KroNI GCCGGC 1 cut(s) 734
Ksp22I TGATCA 5 cut(s) 550, 1176, 1407, 1548, 1561
LmnI GCTCC 4 cut(s) 530, 765, 1140, 1520
LweI GCATC 2 cut(s) 301, 1125
MaeI CTAG 4 cut(s) 470, 1010, 1037, 1334
MaeII ACGT 2 cut(s) 648, 1190
MaeIII GTNAC 7 cut(s) 173, 271, 416, 631, 985, 1186, 1694
MfeI CAATTG 2 cut(s) 150, 589
MhlI GDGCHC 2 cut(s) 770, 1137
MlsI TGGCCA 1 cut(s) 1103
MluNI TGGCCA 1 cut(s) 1103
MlyI GAGTC 3 cut(s) 628, 967, 1469
MmeI TCCRAC 1 cut(s) 846
Mox20I TGGCCA 1 cut(s) 1103
MroNI GCCGGC 1 cut(s) 732
MscI TGGCCA 1 cut(s) 1103
MseI TTAA 4 cut(s) 197, 1017, 1289, 1358
MslI CAYNNNNRTG 4 cut(s) 427, 479, 1172, 1379
Msp20I TGGCCA 1 cut(s) 1103
MspA1I CMGCKG 3 cut(s) 44, 953, 1310
MspI CCGG 2 cut(s) 733, 1472
MspR9I CCNGG 4 cut(s) 365, 391, 1472, 1685
MunI CAATTG 2 cut(s) 150, 589
Mva1269I GAATGC 1 cut(s) 1284
MvaI CCWGG 3 cut(s) 365, 391, 1685
MwoI GCNNNNNNNGC 1 cut(s) 701
NaeI GCCGGC 1 cut(s) 734
NciI CCSGG 1 cut(s) 1472
NcoI CCATGG 1 cut(s) 877
NgoMIV GCCGGC 1 cut(s) 732
NheI GCTAGC 1 cut(s) 1036
NlaIV GGNNCC 1 cut(s) 767
NmeAIII GCCGAG 1 cut(s) 1669
NmuCI GTSAC 4 cut(s) 416, 631, 985, 1186
PcsI WCGNNNNNNNCGW 1 cut(s) 26
PctI GAATGC 1 cut(s) 1284
PdiI GCCGGC 1 cut(s) 734
PfeI GAWTC 5 cut(s) 71, 283, 373, 1266, 1272
PflFI GACNNNGTC 2 cut(s) 659, 1466
PflMI CCANNNNNTGG 3 cut(s) 293, 390, 457
PfoI TCCNGGA 1 cut(s) 1470
PleI GAGTC 3 cut(s) 628, 967, 1469
PpsI GAGTC 3 cut(s) 628, 967, 1469
Ppu21I YACGTR 1 cut(s) 649
PshAI GACNNNNGTC 1 cut(s) 992
Psp124BI GAGCTC 1 cut(s) 1137
Psp6I CCWGG 3 cut(s) 363, 389, 1683
PspFI CCCAGC 1 cut(s) 1523
PspGI CCWGG 3 cut(s) 363, 389, 1683
PspN4I GGNNCC 1 cut(s) 767
PspPI GGNCC 2 cut(s) 655, 874
PstI CTGCAG 2 cut(s) 789, 1660
PsyI GACNNNGTC 2 cut(s) 659, 1466
PvuII CAGCTG 3 cut(s) 44, 953, 1310
RigI GGCCGGCC 1 cut(s) 736
RsaI GTAC 3 cut(s) 399, 651, 1218
RsaNI GTAC 3 cut(s) 398, 650, 1217
RseI CAYNNNNRTG 4 cut(s) 427, 479, 1172, 1379
SacI GAGCTC 1 cut(s) 1137
SaqAI TTAA 4 cut(s) 197, 1017, 1289, 1358
Sau96I GGNCC 2 cut(s) 655, 874
SchI GAGTC 3 cut(s) 628, 967, 1469
ScrFI CCNGG 4 cut(s) 365, 391, 1472, 1685
SduI GDGCHC 2 cut(s) 770, 1137
SfaNI GCATC 2 cut(s) 301, 1125
SfcI CTRYAG 2 cut(s) 785, 1656
SinI GGWCC 2 cut(s) 655, 874
SmiMI CAYNNNNRTG 4 cut(s) 427, 479, 1172, 1379
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SnaBI TACGTA 1 cut(s) 649
SpeI ACTAGT 1 cut(s) 1009
SsiI CCGC 1 cut(s) 1222
SspMI CTAG 4 cut(s) 470, 1010, 1037, 1334
SstI GAGCTC 1 cut(s) 1137
StyD4I CCNGG 4 cut(s) 363, 389, 1470, 1683
StyI CCWWGG 3 cut(s) 877, 968, 1314
TaaI ACNGT 7 cut(s) 337, 557, 746, 985, 1127, 1401, 1745
TaiI ACGT 2 cut(s) 651, 1193
TaqI TCGA 7 cut(s) 20, 29, 543, 751, 996, 1131, 1344
TaqII GACCGA 1 cut(s) 772
TatI WGTACW 1 cut(s) 1216
TfiI GAWTC 5 cut(s) 71, 283, 373, 1266, 1272
Tru1I TTAA 4 cut(s) 197, 1017, 1289, 1358
Tru9I TTAA 4 cut(s) 197, 1017, 1289, 1358
TscAI CASTG 3 cut(s) 562, 717, 1576
TseFI GTSAC 4 cut(s) 416, 631, 985, 1186
Tsp45I GTSAC 4 cut(s) 416, 631, 985, 1186
TspDTI ATGAA 8 cut(s) 292, 468, 712, 867, 1019, 1075, 1121, 1755
TspGWI ACGGA 1 cut(s) 1174
TspRI CASTG 3 cut(s) 562, 717, 1576
Tth111I GACNNNGTC 2 cut(s) 659, 1466
Van91I CCANNNNNTGG 3 cut(s) 293, 390, 457
VpaK11BI GGWCC 2 cut(s) 655, 874
XapI RAATTY 4 cut(s) 855, 911, 1056, 1528
XmiI GTMKAC 1 cut(s) 645
XspI CTAG 4 cut(s) 470, 1010, 1037, 1334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.