Rh1AG351700

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0003626
Physical Location & Seq
Reverse (-)
58802216 .. 58803838
1623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG351700.1

Sequence Viewer

Length: 927 bp
ATGGAGCTGCAAGAAGTCGAAAAGAGATTAAAAAGAGGAGGAGGAGAAACAAAAAGGGAGGAAGAGAATTTGGTTCATGATTCATCTATAGATTACAAAGGAACAGTTCCTCTACGTGCTTCAACAGGCGTTTGGAAAGCTTCTCTGTTTATCATCACTATTGAATTTAGTGAGAGGCTGAGTTACTTTGGAATAGCAACAAATCTCATCACGTACCTCACCCAAGTGCTTCATCAAGACATCAAAACCGCAGCAAAAAATGTGAACTATTGGACAGGAGTGACGACAATCATGCCTTTAATCGGAGGGTTCTTAGCAGATGCCTACACTGGTCGATTCAACATGGTTATGTTTTCATCCCTCATATATCTAATGGGTCTGAGTCTCTTGACAATGTCGCAATTCATCCCAAGTCTAAAGCCTTGCAAAACGAAGATGTGTCGACAGCCTAGAAAGCTTCATGAAGTGTTACTTTTTGTTGCCTTGTACTTCATCTCTGTTGGAACCGGAGGTCACAAGCCATGTCTTCAAAGCTTTGGCGCTGACCAATTCGACGATGATCACTTGGAAGAAAGAAAGAAGAAAATGTCCTTCTTCAACTGGTGGAACTTTGCACTTTGTTGTGGGCTGTTTCTTGGTGTAACTGTGATTGTTTACGTTCAGGACTCAGTGAGCTGGGGCGTAGCAGATCTTGTTCTCACAATCACCCTGGCTATTGCAATAGTGACGTTTTATATGGGGAAGTATTGTTACCGTTATAGAGTGGCACAAGGAAGCCCTTTGAGACCCATGCTACAGGTCTTGGTTGCAGCCATTAGAAAAAGAAATTTGCCCAATCCTCAAAACCCTGATCTGCTATTTGAAGTTCCCAAGTCAGAGAAGTACTCCCAAGGAAGGCTTCTACTTCACACAAATAGGCTCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

308

Amino Acids

35.08

Weight (kDa)

9.35

Isoelectric Point (pI)

36.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 113 - 276 2.9e-38 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 442
AciI CCGC 1 cut(s) 249
AcsI RAATTY 3 cut(s) 67, 164, 826
AfaI GTAC 3 cut(s) 215, 488, 884
AfiI CCNNNNNNNGG 2 cut(s) 302, 894
AgsI TTSAA 6 cut(s) 123, 164, 340, 530, 598, 863
AjnI CCWGG 1 cut(s) 708
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 5 cut(s) 7, 140, 457, 534, 675
AluI AGCT 5 cut(s) 7, 140, 457, 534, 675
Alw26I GTCTC 2 cut(s) 389, 778
ApeKI GCWGC 3 cut(s) 7, 251, 809
ApoI RAATTY 3 cut(s) 67, 164, 826
AspLEI GCGC 1 cut(s) 542
AsuHPI GGTGA 2 cut(s) 211, 697
BarI GAAGNNNNNNTAC 2 cut(s) 734, 766
BbsI GAAGAC 1 cut(s) 518
BbvI GCAGC 2 cut(s) 263, 821
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciT130I CCWGG 1 cut(s) 710
BclI TGATCA 1 cut(s) 559
BcoDI GTCTC 2 cut(s) 389, 778
BfaI CTAG 1 cut(s) 450
BfmI CTRYAG 2 cut(s) 87, 794
BfoI RGCGCY 1 cut(s) 543
BglII AGATCT 1 cut(s) 688
BisI GCNGC 3 cut(s) 8, 252, 810
BlsI GCNGC 3 cut(s) 9, 253, 811
BmcAI AGTACT 1 cut(s) 884
Bme1390I CCNGG 1 cut(s) 710
BmiI GGNNCC 1 cut(s) 505
BmrFI CCNGG 1 cut(s) 710
BmsI GCATC 1 cut(s) 310
BpiI GAAGAC 1 cut(s) 518
BplI GAGNNNNNCTC 2 cut(s) 869, 901
Bpu10I CCTNAGC 1 cut(s) 920
BsaAI YACGTR 2 cut(s) 116, 213
BsaI GGTCTC 1 cut(s) 778
BsaJI CCNNGG 2 cut(s) 708, 889
BsaWI WCCGGW 1 cut(s) 506
Bsc4I CCNNNNNNNGG 2 cut(s) 302, 894
Bse1I ACTGG 2 cut(s) 334, 605
BseBI CCWGG 1 cut(s) 710
BseDI CCNNGG 2 cut(s) 708, 889
BseGI GGATG 2 cut(s) 356, 405
BseLI CCNNNNNNNGG 2 cut(s) 302, 894
BseMII CTCAG 3 cut(s) 170, 371, 681
BseNI ACTGG 2 cut(s) 334, 605
BseRI GAGGAG 3 cut(s) 51, 54, 57
BseXI GCAGC 2 cut(s) 263, 821
BseYI CCCAGC 1 cut(s) 675
BsiSI CCGG 1 cut(s) 507
BslI CCNNNNNNNGG 2 cut(s) 302, 894
BsmAI GTCTC 2 cut(s) 389, 778
Bso31I GGTCTC 1 cut(s) 778
Bsp143I GATC 3 cut(s) 559, 688, 850
BspACI CCGC 1 cut(s) 249
BspCNI CTCAG 3 cut(s) 171, 372, 680
BspHI TCATGA 2 cut(s) 76, 460
BspLI GGNNCC 1 cut(s) 505
BspTNI GGTCTC 1 cut(s) 778
BsrI ACTGG 2 cut(s) 334, 605
BssECI CCNNGG 2 cut(s) 708, 889
BssMI GATC 3 cut(s) 559, 688, 850
BssT1I CCWWGG 1 cut(s) 889
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 3 cut(s) 106, 646, 755
Bst6I CTCTTC 1 cut(s) 57
BstBAI YACGTR 2 cut(s) 116, 213
BstDEI CTNAG 5 cut(s) 179, 313, 380, 667, 920
BstF5I GGATG 2 cut(s) 356, 405
BstH2I RGCGCY 1 cut(s) 543
BstHHI GCGC 1 cut(s) 542
BstKTI GATC 3 cut(s) 562, 691, 853
BstMAI GTCTC 2 cut(s) 389, 778
BstMBI GATC 3 cut(s) 559, 688, 850
BstMWI GCNNNNNNNGC 1 cut(s) 454
BstNI CCWGG 1 cut(s) 710
BstSCI CCNGG 1 cut(s) 708
BstSFI CTRYAG 2 cut(s) 87, 794
BstV1I GCAGC 2 cut(s) 263, 821
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 1 cut(s) 688
BstYI RGATCY 1 cut(s) 688
BtsCI GGATG 2 cut(s) 356, 405
BtsIMutI CAGTG 2 cut(s) 327, 675
CciI TCATGA 2 cut(s) 76, 460
CfoI GCGC 1 cut(s) 542
Csp6I GTAC 3 cut(s) 214, 487, 883
CviAII CATG 6 cut(s) 77, 292, 343, 461, 522, 790
CviQI GTAC 3 cut(s) 214, 487, 883
DdeI CTNAG 5 cut(s) 179, 313, 380, 667, 920
DpnI GATC 3 cut(s) 561, 690, 852
DpnII GATC 3 cut(s) 559, 688, 850
Eam1104I CTCTTC 1 cut(s) 57
EarI CTCTTC 1 cut(s) 57
Eco130I CCWWGG 1 cut(s) 889
Eco31I GGTCTC 1 cut(s) 778
EcoRII CCWGG 1 cut(s) 708
EcoT14I CCWWGG 1 cut(s) 889
ErhI CCWWGG 1 cut(s) 889
FaeI CATG 6 cut(s) 80, 295, 346, 464, 525, 793
FalI AAGNNNNNCTT 4 cut(s) 456, 488, 882, 914
FatI CATG 6 cut(s) 76, 291, 342, 460, 521, 789
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 1 cut(s) 442
Fnu4HI GCNGC 3 cut(s) 8, 252, 810
FokI GGATG 2 cut(s) 343, 392
Fsp4HI GCNGC 3 cut(s) 8, 252, 810
FspBI CTAG 1 cut(s) 450
GlaI GCGC 1 cut(s) 541
GluI GCNGC 3 cut(s) 8, 252, 810
GsaI CCCAGC 1 cut(s) 679
HaeII RGCGCY 1 cut(s) 543
HapII CCGG 1 cut(s) 507
HhaI GCGC 1 cut(s) 542
Hin1II CATG 6 cut(s) 80, 295, 346, 464, 525, 793
Hin6I GCGC 1 cut(s) 540
HinP1I GCGC 1 cut(s) 540
HincII GTYRAC 1 cut(s) 443
HindII GTYRAC 1 cut(s) 443
HindIII AAGCTT 3 cut(s) 138, 455, 532
HinfI GANTC 4 cut(s) 80, 336, 382, 665
HpaII CCGG 1 cut(s) 507
HphI GGTGA 2 cut(s) 211, 697
Hpy166II GTNNAC 3 cut(s) 265, 443, 655
Hpy188I TCNGA 3 cut(s) 305, 381, 877
Hpy188III TCNNGA 5 cut(s) 77, 236, 388, 461, 662
Hpy8I GTNNAC 3 cut(s) 265, 443, 655
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 2 cut(s) 601, 888
HpyCH4III ACNGT 3 cut(s) 106, 646, 755
HpyCH4IV ACGT 4 cut(s) 115, 212, 657, 728
HpyCH4V TGCA 5 cut(s) 10, 426, 614, 719, 809
HpyF10VI GCNNNNNNNGC 1 cut(s) 454
HpyF3I CTNAG 5 cut(s) 179, 313, 380, 667, 920
HpySE526I ACGT 4 cut(s) 115, 212, 657, 728
Hsp92II CATG 6 cut(s) 80, 295, 346, 464, 525, 793
HspAI GCGC 1 cut(s) 540
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 3 cut(s) 559, 688, 850
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 2 cut(s) 263, 821
LweI GCATC 1 cut(s) 310
MaeI CTAG 1 cut(s) 450
MaeII ACGT 4 cut(s) 115, 212, 657, 728
MaeIII GTNAC 7 cut(s) 182, 280, 468, 512, 640, 724, 749
MalI GATC 3 cut(s) 561, 690, 852
MboI GATC 3 cut(s) 559, 688, 850
MboII GAAGA 6 cut(s) 74, 445, 518, 581, 586, 592
MflI RGATCY 1 cut(s) 688
MluCI AATT 5 cut(s) 67, 164, 401, 548, 826
MlyI GAGTC 2 cut(s) 391, 659
MmeI TCCRAC 1 cut(s) 481
MseI TTAA 2 cut(s) 29, 299
MslI CAYNNNNRTG 2 cut(s) 224, 347
MspI CCGG 1 cut(s) 507
MspR9I CCNGG 1 cut(s) 710
MvaI CCWGG 1 cut(s) 710
MwoI GCNNNNNNNGC 1 cut(s) 454
NdeII GATC 3 cut(s) 559, 688, 850
NlaIII CATG 6 cut(s) 80, 295, 346, 464, 525, 793
NlaIV GGNNCC 1 cut(s) 505
NmuCI GTSAC 3 cut(s) 280, 512, 724
OliI CACNNNNGTG 1 cut(s) 224
PagI TCATGA 2 cut(s) 76, 460
PfeI GAWTC 2 cut(s) 80, 336
PflFI GACNNNGTC 1 cut(s) 394
PkrI GCNGC 3 cut(s) 9, 253, 811
PleI GAGTC 2 cut(s) 390, 659
PpsI GAGTC 2 cut(s) 390, 659
Ppu21I YACGTR 2 cut(s) 116, 213
Psp6I CCWGG 1 cut(s) 708
PspFI CCCAGC 1 cut(s) 675
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 1 cut(s) 505
PsuI RGATCY 1 cut(s) 688
PsyI GACNNNGTC 1 cut(s) 394
RsaI GTAC 3 cut(s) 215, 488, 884
RsaNI GTAC 3 cut(s) 214, 487, 883
RseI CAYNNNNRTG 2 cut(s) 224, 347
SalI GTCGAC 1 cut(s) 441
SaqAI TTAA 2 cut(s) 29, 299
SatI GCNGC 3 cut(s) 8, 252, 810
Sau3AI GATC 3 cut(s) 559, 688, 850
ScaI AGTACT 1 cut(s) 884
SchI GAGTC 2 cut(s) 391, 659
ScrFI CCNGG 1 cut(s) 710
SfaNI GCATC 1 cut(s) 310
SfcI CTRYAG 2 cut(s) 87, 794
SmiMI CAYNNNNRTG 2 cut(s) 224, 347
Sse9I AATT 5 cut(s) 67, 164, 401, 548, 826
SsiI CCGC 1 cut(s) 249
SspMI CTAG 1 cut(s) 450
StyD4I CCNGG 1 cut(s) 708
StyI CCWWGG 1 cut(s) 889
TaaI ACNGT 3 cut(s) 106, 646, 755
TaiI ACGT 4 cut(s) 118, 215, 660, 731
TaqI TCGA 4 cut(s) 18, 334, 442, 552
TasI AATT 5 cut(s) 67, 164, 401, 548, 826
TatI WGTACW 2 cut(s) 486, 882
TfiI GAWTC 2 cut(s) 80, 336
Tru1I TTAA 2 cut(s) 29, 299
Tru9I TTAA 2 cut(s) 29, 299
TscAI CASTG 2 cut(s) 334, 675
TseFI GTSAC 3 cut(s) 280, 512, 724
TseI GCWGC 3 cut(s) 7, 251, 809
Tsp45I GTSAC 3 cut(s) 280, 512, 724
TspDTI ATGAA 8 cut(s) 65, 72, 221, 345, 394, 449, 477, 481
TspRI CASTG 2 cut(s) 334, 675
Tth111I GACNNNGTC 1 cut(s) 394
XapI RAATTY 3 cut(s) 67, 164, 826
XmiI GTMKAC 1 cut(s) 442
XspI CTAG 1 cut(s) 450
ZrmI AGTACT 1 cut(s) 884
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.