Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003626

Physical Location & Seq

Genomic Coordinates Reverse (-)

25051572 .. 25054193

Gene Structure 2622 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1141500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1785 bp

ATGAAGCATGATAGATTGGAGAAAAGAAAATCAGGCAGTCATGCTTTAGATATATTTAGGGACGACGAGACTTGGGTTTATGATTCATCCATAGATCATAAAGGACGAGTTCCTCGCCGTGCTTCTACCGGTGTTTGGAAAGCTTCTCTGTTTATCATCACGATTGAATTTAGTGAAAGGTTAAGCTGGTTTGGACTATCAACAAATCTCATCTCCTACCTCACCGGAGTGCTTCATCAAGAAATCAAAACAGCAGCCAAAACTGTGAACTTTTGGTCAGGAGTGACAACATTAATACCCTTAATTGGAGGATTTTTAGCAGATGCCTACACTGGCCGATTCGGCATGGTTATGGTTTCATCCTTCATTTATCTAACGGGTCTAAGTCTGCTGACAATGTCGCAGTTCGTCCCTAGTCTAAAGCCCTGTGATACAACCCCCTGCCGACTGCCGCCTCGAAAGCTTCATGAAGTGGTGCTTTTTGTTGCCTTGTATTGCATCTCTCTTGGAACTGGAGGGCACAAACCATGTCTTCAGAGCTTTGGAGCAGATCAATTCGATGACGATCACCCGGTAGAACGAATCAAGAAAATGTCCTACTTCAATTGGTGGAACTTTGCAACCTGCTGTGGGCTGCTTCTTGGGGTGACTGCTATTGTCTATGTTCAAGACTTTTTGGGTTGGGGTGTTGCTGTTCTTGGTCTCACAATCTTCATGGCTTTTACAGTTGTCACCTTCTTTATGGGGAAGTCTTGCTATAGGTATAGGCTCCCAGAAGGAAGCCCTATGATCCCTTTGTTGCAGGTATTTGTTGCAGCCATAAGAAAAAGAAAGTTGGCCCATCCTTCAAACCCTGCTTTGCTATTTGAAGTTCCCAAGTCTCAAGCCCATGGAAGGCAACTACTTCATACAAATAGGCTTAGGTTTCTAGACAAGGCAGCGATCATAGAAGAGAATGAGAGCACATCTTGTTTGCAACAGAAACACAATCCTTGGAGATTGACAACACTGACAAGAGTGGAGGAGGTGAAGCTTCTTTTCAACATGATCCCCATATGGATAACCTCAATACCATTTGGATTATGTGTCGCACAAGCCCCAACATTCTTTGTCAAACAAGCTGCAACAATGAACCTTAATATCACTGACAACTTCAAAATCCCACCAGCCGCAATCAACTCTCTTGCGGCCATTGCAATGTTGATCTCTGTCGCAGTCTATGACAAGGTTCTTGTTCCGGTTCTAAAGAAAATCAACGGCAACGAACGAGGGATGACCATCCTCCAAAGGATTGGAGTTGGCATGGTTTTTTCAACAGCATCAATGACAGCTGCAGCATTAGCTGAAACAAAAAGACTAGGAGTTCATAATCCAAAATCTCTGAGTGTGTTGTGGCTAGCTCCCCAGTACATAATTCTAGGGTTTGGAGATGGGTTCACTCTGGTAGGGCTACAAGAGTACTTCTACGACGAAGTTCCCGACAACATGAGAAGCATAGGGATTGCTTTGTATCTGAGTGTGATAGGAACTGGGAGCTTCATAAGTAGCTTTCTGATTATGGCTGTGGATGGTATCACCGGAAAGGCAGGGAAAAGCTGGTTTGGAAAGGACTTACGTTCAAGCCGTTTGGACAATTTCTATTGGCTTTTGGCAGCAGTGAATGCGGTGAATTTCTTTGCTCATGTGTGGGTATCTATTCGATATACGTACAAAAATGTGGAGAGGAGGAGGGTAGTGCCTGATAATGTTTCTGAGTGTAGCAGCAGTGATCAACTTATGCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

595

Amino Acids

66.4

Weight (kDa)

9.32

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	62 - 515	1.2e-09	Major Facilitator Superfamily
PTR2	PF00854	116 - 528	1.4e-85	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37900 AT2G37900 AT3G53960
fragaria_vesca	FvH4_6g12770 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570
malus_domestica	MD01G1141500.v1.1 MD04G1138500.v1.1 MD07G1205700.v1.1 MD12G1153900.v1.1 MD12G1154200.v1.1
prunus_persica	Prupe.2G241800_v2.0.a1 Prupe.6G264100_v2.0.a1
pyrus_communis	pycom04g12670 pycom07g19250 pycom12g14650
rosa_chinensis	RchiOBHm_Chr1g0368741 RchiOBHm_Chr3g0464761
rosa_laevigata	RLG00000024674 RLG00000027192
rosa_multiflora	Rmu_sc0001791.1_g000017 Rmu_sc0007114.1_g000013
rosa_roxburghii	Rroxscaffold_4G00288310 Rroxscaffold_6G00415440
rosa_rugosa	Rorug01G0344800 Rorug03G0073800 Rorug03G0073900
rosa_samantha	Rh1AG351700 Rh1BG315400 Rh3DG137900
rosa_wichuraiana	Rw3G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	632, 793
AciI	CCGC	4 cut(s)	452, 1170, 1187, 1664
AclWI	GGATC	2 cut(s)	784, 1042
AcoI	YGGCCR	2 cut(s)	334, 1188
AcsI	RAATTY	2 cut(s)	167, 1669
AcuI	CTGAAG	1 cut(s)	518
AfaI	GTAC	3 cut(s)	1409, 1460, 1709
AfiI	CCNNNNNNNGG	4 cut(s)	135, 305, 630, 894
AgeI	ACCGGT	1 cut(s)	128
AgsI	TTSAA	9 cut(s)	167, 604, 668, 849, 869, 1042, 1156, 1314, 1620
AleI	CACNNNNGTG	1 cut(s)	227
Alw21I	GWGCWC	1 cut(s)	965
Alw26I	GTCTC	3 cut(s)	62, 707, 885
AlwI	GGATC	2 cut(s)	784, 1042
AoxI	GGCC	3 cut(s)	334, 837, 1188
ApeKI	GCWGC	9 cut(s)	254, 634, 815, 938, 1121, 1331, 1334, 1652, 1761
ApoI	RAATTY	2 cut(s)	167, 1669
AseI	ATTAAT	1 cut(s)	293
AsiGI	ACCGGT	1 cut(s)	128
AspS9I	GGNCC	1 cut(s)	838
AsuC2I	CCSGG	1 cut(s)	572
AsuHPI	GGTGA	7 cut(s)	214, 560, 658, 724, 1039, 1567, 1678
AsuNHI	GCTAGC	1 cut(s)	1396
BaeGI	GKGCMC	1 cut(s)	522
BbsI	GAAGAC	1 cut(s)	524
Bbv12I	GWGCWC	1 cut(s)	965
BbvI	GCAGC	9 cut(s)	266, 621, 827, 950, 1108, 1318, 1346, 1664, 1773
BccI	CCATC	4 cut(s)	849, 1286, 1424, 1562
BceAI	ACGGC	3 cut(s)	102, 1273, 1608
BclI	TGATCA	1 cut(s)	1768
BcnI	CCSGG	1 cut(s)	572
BcoDI	GTCTC	3 cut(s)	62, 707, 885
BfaI	CTAG	5 cut(s)	414, 929, 1358, 1397, 1418
BfmI	CTRYAG	2 cut(s)	757, 1332
BfuAI	ACCTGC	2 cut(s)	632, 793
BglI	GCCNNNNNGGC	1 cut(s)	342
BmcAI	AGTACT	1 cut(s)	1460
Bme1390I	CCNGG	1 cut(s)	572
BmgT120I	GGNCC	1 cut(s)	838
BmiI	GGNNCC	1 cut(s)	770
BmrFI	CCNGG	1 cut(s)	572
BmrI	ACTGGG	2 cut(s)	1399, 1539
BmsI	GCATC	3 cut(s)	313, 507, 1328
BmtI	GCTAGC	1 cut(s)	1400
BmuI	ACTGGG	2 cut(s)	1399, 1539
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	1 cut(s)	534
Bpu10I	CCTNAGC	1 cut(s)	920
BpuEI	CTTGAG	1 cut(s)	867
BpuMI	CCSGG	1 cut(s)	572
BsaAI	YACGTR	1 cut(s)	1707
BsaBI	GATNNNNATC	2 cut(s)	564, 1277
BsaI	GGTCTC	1 cut(s)	707
BsaJI	CCNNGG	2 cut(s)	889, 992
BsaWI	WCCGGW	4 cut(s)	128, 224, 1237, 1577
Bsc4I	CCNNNNNNNGG	4 cut(s)	135, 305, 630, 894
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	4 cut(s)	337, 517, 1405, 1534
Bse3DI	GCAATG	2 cut(s)	1191, 1203
Bse8I	GATNNNNATC	2 cut(s)	564, 1277
BseDI	CCNNGG	2 cut(s)	889, 992
BseGI	GGATG	6 cut(s)	86, 359, 841, 1278, 1278, 1573
BseJI	GATNNNNATC	2 cut(s)	564, 1277
BseLI	CCNNNNNNNGG	4 cut(s)	135, 305, 630, 894
BseMI	GCAATG	2 cut(s)	1191, 1203
BseMII	CTCAG	3 cut(s)	1373, 1505, 1743
BseNI	ACTGG	4 cut(s)	337, 517, 1405, 1534
BseRI	GAGGAG	3 cut(s)	1037, 1738, 1741
BseSI	GKGCMC	1 cut(s)	522
BseXI	GCAGC	9 cut(s)	266, 621, 827, 950, 1108, 1318, 1346, 1664, 1773
BshFI	GGCC	3 cut(s)	336, 839, 1190
BshTI	ACCGGT	1 cut(s)	128
BsiHKAI	GWGCWC	1 cut(s)	965
BsiSI	CCGG	5 cut(s)	129, 225, 572, 1238, 1578
BslFI	GGGAC	2 cut(s)	74, 395
BslI	CCNNNNNNNGG	4 cut(s)	135, 305, 630, 894
BsmAI	GTCTC	3 cut(s)	62, 707, 885
BsmFI	GGGAC	2 cut(s)	74, 395
BsmI	GAATGC	1 cut(s)	1666
BsnI	GGCC	3 cut(s)	336, 839, 1190
Bso31I	GGTCTC	1 cut(s)	707
Bsp1286I	GDGCHC	2 cut(s)	522, 965
Bsp143I	GATC	8 cut(s)	94, 550, 565, 789, 942, 1047, 1203, 1768
Bsp19I	CCATGG	1 cut(s)	889
BspACI	CCGC	4 cut(s)	452, 1170, 1187, 1664
BspANI	GGCC	3 cut(s)	336, 839, 1190
BspCNI	CTCAG	3 cut(s)	1374, 1506, 1744
BspHI	TCATGA	1 cut(s)	466
BspLI	GGNNCC	1 cut(s)	770
BspMAI	CTGCAG	1 cut(s)	1336
BspMI	ACCTGC	2 cut(s)	632, 793
BspOI	GCTAGC	1 cut(s)	1400
BspPI	GGATC	2 cut(s)	784, 1042
BspTNI	GGTCTC	1 cut(s)	707
BsrDI	GCAATG	2 cut(s)	1191, 1203
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	4 cut(s)	337, 517, 1405, 1534
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	2 cut(s)	889, 992
BssMI	GATC	8 cut(s)	94, 550, 565, 789, 942, 1047, 1203, 1768
BssT1I	CCWWGG	2 cut(s)	889, 992
Bst4CI	ACNGT	2 cut(s)	265, 727
Bst6I	CTCTTC	1 cut(s)	945
BstAPI	GCANNNNNTGC	1 cut(s)	1661
BstBAI	YACGTR	1 cut(s)	1707
BstC8I	GCNNGC	1 cut(s)	1398
BstDEI	CTNAG	5 cut(s)	383, 920, 1382, 1514, 1752
BstDSI	CCRYGG	1 cut(s)	889
BstF5I	GGATG	6 cut(s)	86, 359, 841, 1278, 1278, 1573
BstKTI	GATC	8 cut(s)	97, 553, 568, 792, 945, 1050, 1206, 1771
BstMAI	GTCTC	3 cut(s)	62, 707, 885
BstMBI	GATC	8 cut(s)	94, 550, 565, 789, 942, 1047, 1203, 1768
BstMWI	GCNNNNNNNGC	5 cut(s)	342, 460, 1193, 1340, 1661
BstSCI	CCNGG	1 cut(s)	570
BstSFI	CTRYAG	2 cut(s)	757, 1332
BstSLI	GKGCMC	1 cut(s)	522
BstSNI	TACGTA	1 cut(s)	1707
BstV1I	GCAGC	9 cut(s)	266, 621, 827, 950, 1108, 1318, 1346, 1664, 1773
BstV2I	GAAGAC	1 cut(s)	524
BstXI	CCANNNNNNTGG	1 cut(s)	1292
BsuRI	GGCC	3 cut(s)	336, 839, 1190
BtgI	CCRYGG	1 cut(s)	889
BtsCI	GGATG	6 cut(s)	86, 359, 841, 1278, 1278, 1573
BtsI	GCAGTG	2 cut(s)	1662, 1771
BtsIMutI	CAGTG	5 cut(s)	330, 1007, 1143, 1662, 1771
BveI	ACCTGC	2 cut(s)	632, 793
Cac8I	GCNNGC	1 cut(s)	1398
CciI	TCATGA	1 cut(s)	466
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	838
Csp6I	GTAC	3 cut(s)	1408, 1459, 1708
CspAI	ACCGGT	1 cut(s)	128
CviQI	GTAC	3 cut(s)	1408, 1459, 1708
DdeI	CTNAG	5 cut(s)	383, 920, 1382, 1514, 1752
DpnI	GATC	8 cut(s)	96, 552, 567, 791, 944, 1049, 1205, 1770
DpnII	GATC	8 cut(s)	94, 550, 565, 789, 942, 1047, 1203, 1768
EaeI	YGGCCR	2 cut(s)	334, 1188
Eam1104I	CTCTTC	1 cut(s)	945
EarI	CTCTTC	1 cut(s)	945
Eco105I	TACGTA	1 cut(s)	1707
Eco130I	CCWWGG	2 cut(s)	889, 992
Eco31I	GGTCTC	1 cut(s)	707
Eco57I	CTGAAG	1 cut(s)	518
EcoT14I	CCWWGG	2 cut(s)	889, 992
ErhI	CCWWGG	2 cut(s)	889, 992
FalI	AAGNNNNNCTT	2 cut(s)	462, 494
FaqI	GGGAC	2 cut(s)	74, 395
FauNDI	CATATG	1 cut(s)	1055
FbaI	TGATCA	1 cut(s)	1768
FokI	GGATG	6 cut(s)	73, 346, 828, 1265, 1285, 1580
FspBI	CTAG	5 cut(s)	414, 929, 1358, 1397, 1418
GsuI	CTGGAG	1 cut(s)	534
HaeIII	GGCC	3 cut(s)	336, 839, 1190
HapII	CCGG	5 cut(s)	129, 225, 572, 1238, 1578
HindIII	AAGCTT	3 cut(s)	141, 461, 1031
HinfI	GANTC	3 cut(s)	83, 339, 582
HpaII	CCGG	5 cut(s)	129, 225, 572, 1238, 1578
HphI	GGTGA	7 cut(s)	214, 560, 658, 724, 1039, 1567, 1678
Hpy166II	GTNNAC	2 cut(s)	268, 1437
Hpy188I	TCNGA	5 cut(s)	537, 1383, 1515, 1554, 1753
Hpy188III	TCNNGA	8 cut(s)	160, 239, 279, 467, 586, 668, 929, 1478
Hpy8I	GTNNAC	2 cut(s)	268, 1437
Hpy99I	CGWCG	2 cut(s)	68, 1472
HpyAV	CCTTC	5 cut(s)	373, 745, 770, 855, 888
HpyCH4III	ACNGT	2 cut(s)	265, 727
HpyCH4IV	ACGT	2 cut(s)	1615, 1706
HpyCH4V	TGCA	8 cut(s)	498, 620, 802, 815, 976, 1124, 1196, 1334
HpyF10VI	GCNNNNNNNGC	5 cut(s)	342, 460, 1193, 1340, 1661
HpyF3I	CTNAG	5 cut(s)	383, 920, 1382, 1514, 1752
HpySE526I	ACGT	2 cut(s)	1615, 1706
Ksp22I	TGATCA	1 cut(s)	1768
Kzo9I	GATC	8 cut(s)	94, 550, 565, 789, 942, 1047, 1203, 1768
LmnI	GCTCC	4 cut(s)	545, 774, 1405, 1533
Lsp1109I	GCAGC	9 cut(s)	266, 621, 827, 950, 1108, 1318, 1346, 1664, 1773
LweI	GCATC	3 cut(s)	313, 507, 1328
MaeI	CTAG	5 cut(s)	414, 929, 1358, 1397, 1418
MaeII	ACGT	2 cut(s)	1615, 1706
MaeIII	GTNAC	3 cut(s)	283, 646, 730
MalI	GATC	8 cut(s)	96, 552, 567, 791, 944, 1049, 1205, 1770
MboI	GATC	8 cut(s)	94, 550, 565, 789, 942, 1047, 1203, 1768
MboII	GAAGA	3 cut(s)	524, 703, 962
MfeI	CAATTG	1 cut(s)	604
MhlI	GDGCHC	2 cut(s)	522, 965
MluCI	AATT	7 cut(s)	167, 303, 554, 604, 1413, 1633, 1669
MseI	TTAA	4 cut(s)	182, 293, 302, 1137
MslI	CAYNNNNRTG	3 cut(s)	227, 350, 1196
MspA1I	CMGCKG	1 cut(s)	1331
MspI	CCGG	5 cut(s)	129, 225, 572, 1238, 1578
MspR9I	CCNGG	1 cut(s)	572
MunI	CAATTG	1 cut(s)	604
Mva1269I	GAATGC	1 cut(s)	1666
MwoI	GCNNNNNNNGC	5 cut(s)	342, 460, 1193, 1340, 1661
NciI	CCSGG	1 cut(s)	572
NcoI	CCATGG	1 cut(s)	889
NdeI	CATATG	1 cut(s)	1055
NdeII	GATC	8 cut(s)	94, 550, 565, 789, 942, 1047, 1203, 1768
NheI	GCTAGC	1 cut(s)	1396
NlaIV	GGNNCC	1 cut(s)	770
NmuCI	GTSAC	3 cut(s)	283, 646, 730
OliI	CACNNNNGTG	1 cut(s)	227
PagI	TCATGA	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	2 cut(s)	1476, 1621
PctI	GAATGC	1 cut(s)	1666
PfeI	GAWTC	3 cut(s)	83, 339, 582
PflFI	GACNNNGTC	1 cut(s)	397
PinAI	ACCGGT	1 cut(s)	128
Ppu21I	YACGTR	1 cut(s)	1707
PshBI	ATTAAT	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	770
PspPI	GGNCC	1 cut(s)	838
PstI	CTGCAG	1 cut(s)	1336
PsyI	GACNNNGTC	1 cut(s)	397
PvuII	CAGCTG	1 cut(s)	1331
RsaI	GTAC	3 cut(s)	1409, 1460, 1709
RsaNI	GTAC	3 cut(s)	1408, 1459, 1708
RseI	CAYNNNNRTG	3 cut(s)	227, 350, 1196
SaqAI	TTAA	4 cut(s)	182, 293, 302, 1137
Sau3AI	GATC	8 cut(s)	94, 550, 565, 789, 942, 1047, 1203, 1768
Sau96I	GGNCC	1 cut(s)	838
ScaI	AGTACT	1 cut(s)	1460
ScrFI	CCNGG	1 cut(s)	572
SduI	GDGCHC	2 cut(s)	522, 965
SfaNI	GCATC	3 cut(s)	313, 507, 1328
SfcI	CTRYAG	2 cut(s)	757, 1332
SmiMI	CAYNNNNRTG	3 cut(s)	227, 350, 1196
SmlI	CTYRAG	1 cut(s)	882
SmoI	CTYRAG	1 cut(s)	882
SnaBI	TACGTA	1 cut(s)	1707
Sse9I	AATT	7 cut(s)	167, 303, 554, 604, 1413, 1633, 1669
SsiI	CCGC	4 cut(s)	452, 1170, 1187, 1664
SspMI	CTAG	5 cut(s)	414, 929, 1358, 1397, 1418
StyD4I	CCNGG	1 cut(s)	570
StyI	CCWWGG	2 cut(s)	889, 992
TaaI	ACNGT	2 cut(s)	265, 727
TaiI	ACGT	2 cut(s)	1618, 1709
TaqI	TCGA	3 cut(s)	457, 558, 1699
TasI	AATT	7 cut(s)	167, 303, 554, 604, 1413, 1633, 1669
TatI	WGTACW	2 cut(s)	1407, 1458
TauI	GCSGC	3 cut(s)	454, 1172, 1190
TfiI	GAWTC	3 cut(s)	83, 339, 582
Tru1I	TTAA	4 cut(s)	182, 293, 302, 1137
Tru9I	TTAA	4 cut(s)	182, 293, 302, 1137
TscAI	CASTG	5 cut(s)	337, 1014, 1150, 1662, 1771
TseFI	GTSAC	3 cut(s)	283, 646, 730
TseI	GCWGC	9 cut(s)	254, 634, 815, 938, 1121, 1331, 1334, 1652, 1761
Tsp45I	GTSAC	3 cut(s)	283, 646, 730
TspRI	CASTG	5 cut(s)	337, 1014, 1150, 1662, 1771
Tth111I	GACNNNGTC	1 cut(s)	397
VspI	ATTAAT	1 cut(s)	293
XapI	RAATTY	2 cut(s)	167, 1669
XbaI	TCTAGA	1 cut(s)	928
XspI	CTAG	5 cut(s)	414, 929, 1358, 1397, 1418
ZrmI	AGTACT	1 cut(s)	1460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.