Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003626

Physical Location & Seq

Genomic Coordinates Reverse (-)

26088269 .. 26090890

Gene Structure 2622 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G241800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1740 bp

ATGGAGCCAGAAATGGAGAAGAGAAGAGGAGAAATAAATACTAATAGGGACGATGAGAATTGGGTTTATGATTCGTCTGTAGATCATAAAGGAAGAGTTCCTCTCCGTGCTTCAACTGGCGTATGGAAAGCTTCTCTCTTTATCATCACTATTGAATTTAGTGAGAGGTTAAGTTACTTTGGAATAGCAACAAATCTCATCTCCTACCTCACCCAAGTGATTCATCAAGACATCAAAACAGCAGCCAAAAATGTGAACTTCTGGGCAGGGGTCACAACCATAATGCCTCTGATTGGAGGCTTTTTAGCAGACGCCTACACTGGCCGATTCAACATGGTTCTGTTTTCATCCCTCATATATATAATGGGCCTAAGTCTCTTGACAATTGCACAGTTTATCCCAAGTCTAAAGCCCTGCAATACAAAGATGTGTCTAGAACCTAGAAAAATTCATGAAGTGGTACTTTTCATTGCCTTGTATTTTATCACTGTTGGAACTGGAGGGCACAAGCCATGCCTTCAAAGCTTTGGAGCTGACCAATTTGACGACGATCACTTGGAAGAAAGAAAGAAGAAAATGTCCTACTTCAACTGGTGGAACTTTGCACTTTGTTGTGGTTTGCTTCTTGGTGTAACAGTAATTGTTTATGTTCAAGACTATGTGAGCTGGGGTGTTGCAGATCTCATTCTCACAATCACCATGGCTATTACAATTGTGACCTTCTACATGGGGAAGGCTTGTTATAGGTATAGAGTGCCAGAAGGAAGCCCTTTGATACCAATGCTGCAGGTATTGGTTGCAGCCATAAGAAAAAGAAACTTACCCAATCCTTCAAGCCCTGCTTTGCTATTTGAAGTTCCCAAGTCTCAGAAGCACTGCCAAGGAAGGCTTTTACTTCACACGAATAGGCTTAGGTTTTTAGACAAGGCTGCGATAATTGAAGAGCATGTCAGCACATCTTATGAACAGAAATATAATCCTTGGAGATTGACAACACTAACACAGGTGGAGGAGGTGAAACTTATTTTGAACATGATCCCCATATGGCTAACTTCATTAACATTTGGAGTATGCCTGGCACAAGCCTCAACATTCTTCGTCAAACAAGCTGCTACAATGAACCTAAACATCACTGACAACTTCAAAATCCCTCCAGCCTCCATATATTCTCTTGGGGCCATTGCAATGCTAATCTCTGTCACAGTCTATGACAAGATTCTTGTTCCAATTTTAAGAAAAGCCACGGGCAATGAAAGAGGCATCAACATCCTGCACAGGATTGGATTTGGGATGATTTTTTCAGTGATGGCAATGTCAGCTGCAGCATTAGTTGAAAGAAGAAGACTAAAAGCTGATGAGCCACAATCCATGAGTGTGTTCTGGTTAGCTCCACAGTACATAATTCTTGGGCTTGGAGATGGGTTCACTCTGGTTGGCTTGCAGGAGTATTTCTATGACCAAGTTCCTGACTCAATGAGAAGCTTGGGTATTGCTTTTTATCTGAGTGTGATTGGGGTTGGGAGCTTCATAAGCAGCTTTCTGATCATGGCTGTGGATCATGTCACAGAGAAGGGTGGGAGAAGTTGGTTTGGCAAGGACTTGAATTCTAGCCGCTTGGACAATTTCTACTGGCTATTGGCAGCCATGAATGGTTTAAATTTGTGCTTTTATGGGTTGTTGGCTAGGGGCTATACTTACAAAAATGTGGAGAGAAGGGTGGTTGTTGTCACTGATGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

580

Amino Acids

65.34

Weight (kDa)

8.92

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37900 AT2G37900 AT3G53960
fragaria_vesca	FvH4_6g12770 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570
malus_domestica	MD01G1141500.v1.1 MD04G1138500.v1.1 MD07G1205700.v1.1 MD12G1153900.v1.1 MD12G1154200.v1.1
prunus_persica	Prupe.2G241800_v2.0.a1 Prupe.6G264100_v2.0.a1
pyrus_communis	pycom04g12670 pycom07g19250 pycom12g14650
rosa_chinensis	RchiOBHm_Chr1g0368741 RchiOBHm_Chr3g0464761
rosa_laevigata	RLG00000024674 RLG00000027192
rosa_multiflora	Rmu_sc0001791.1_g000017 Rmu_sc0007114.1_g000013
rosa_roxburghii	Rroxscaffold_4G00288310 Rroxscaffold_6G00415440
rosa_rugosa	Rorug01G0344800 Rorug03G0073800 Rorug03G0073900
rosa_samantha	Rh1AG351700 Rh1BG315400 Rh3DG137900
rosa_wichuraiana	Rw3G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	778
AciI	CCGC	1 cut(s)	1612
AclWI	GGATC	2 cut(s)	1030, 1563
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	4 cut(s)	155, 447, 1603, 1657
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	2 cut(s)	462, 1397
AfiI	CCNNNNNNNGG	1 cut(s)	293
AjnI	CCWGG	1 cut(s)	1074
AleI	CACNNNNGTG	2 cut(s)	215, 1733
Alw26I	GTCTC	2 cut(s)	380, 870
AlwI	GGATC	2 cut(s)	1030, 1563
AoxI	GGCC	3 cut(s)	322, 367, 1176
ApeKI	GCWGC	9 cut(s)	242, 784, 800, 929, 1109, 1319, 1322, 1533, 1640
ApoI	RAATTY	4 cut(s)	155, 447, 1603, 1657
AspS9I	GGNCC	2 cut(s)	367, 1176
AsuHPI	GGTGA	3 cut(s)	202, 688, 1027
BaeGI	GKGCMC	1 cut(s)	507
BbsI	GAAGAC	1 cut(s)	1348
BbvI	GCAGC	9 cut(s)	254, 771, 812, 916, 1096, 1306, 1334, 1545, 1652
BccI	CCATC	2 cut(s)	1300, 1412
BciT130I	CCWGG	1 cut(s)	1076
BclI	TGATCA	1 cut(s)	1542
BcoDI	GTCTC	2 cut(s)	380, 870
BfaI	CTAG	4 cut(s)	434, 441, 1608, 1683
BfmI	CTRYAG	3 cut(s)	78, 785, 1320
BfuAI	ACCTGC	1 cut(s)	778
BglII	AGATCT	1 cut(s)	679
Bme1390I	CCNGG	1 cut(s)	1076
BmgT120I	GGNCC	2 cut(s)	367, 1176
BmiI	GGNNCC	2 cut(s)	6, 1177
BmrFI	CCNGG	1 cut(s)	1076
BmsI	GCATC	1 cut(s)	1269
BpiI	GAAGAC	1 cut(s)	1348
BplI	GAGNNNNNCTC	2 cut(s)	87, 119
BpmI	CTGGAG	2 cut(s)	519, 1137
Bpu10I	CCTNAGC	1 cut(s)	911
BsaHI	GRCGYC	1 cut(s)	312
BsaJI	CCNNGG	4 cut(s)	699, 880, 980, 1242
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse1I	ACTGG	5 cut(s)	121, 325, 502, 596, 1634
Bse3DI	GCAATG	5 cut(s)	468, 1179, 1191, 1255, 1317
BseBI	CCWGG	1 cut(s)	1076
BseDI	CCNNGG	4 cut(s)	699, 880, 980, 1242
BseGI	GGATG	3 cut(s)	347, 1266, 1296
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseMI	GCAATG	5 cut(s)	468, 1179, 1191, 1255, 1317
BseMII	CTCAG	2 cut(s)	881, 1493
BseNI	ACTGG	5 cut(s)	121, 325, 502, 596, 1634
BseRI	GAGGAG	2 cut(s)	42, 1025
BseSI	GKGCMC	1 cut(s)	507
BseXI	GCAGC	9 cut(s)	254, 771, 812, 916, 1096, 1306, 1334, 1545, 1652
BseYI	CCCAGC	1 cut(s)	666
BsgI	GTGCAG	1 cut(s)	1256
BshFI	GGCC	3 cut(s)	324, 369, 1178
BslFI	GGGAC	1 cut(s)	62
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	2 cut(s)	380, 870
BsmFI	GGGAC	1 cut(s)	62
BsnI	GGCC	3 cut(s)	324, 369, 1178
Bsp1286I	GDGCHC	1 cut(s)	507
Bsp143I	GATC	6 cut(s)	82, 550, 679, 1035, 1542, 1555
Bsp19I	CCATGG	1 cut(s)	699
BspACI	CCGC	1 cut(s)	1612
BspANI	GGCC	3 cut(s)	324, 369, 1178
BspCNI	CTCAG	2 cut(s)	880, 1494
BspHI	TCATGA	1 cut(s)	451
BspLI	GGNNCC	2 cut(s)	6, 1177
BspMAI	CTGCAG	2 cut(s)	789, 1324
BspMI	ACCTGC	1 cut(s)	778
BspPI	GGATC	2 cut(s)	1030, 1563
BspQI	GCTCTTC	1 cut(s)	936
BsrDI	GCAATG	5 cut(s)	468, 1179, 1191, 1255, 1317
BsrI	ACTGG	5 cut(s)	121, 325, 502, 596, 1634
BssECI	CCNNGG	4 cut(s)	699, 880, 980, 1242
BssMI	GATC	6 cut(s)	82, 550, 679, 1035, 1542, 1555
BssNI	GRCGYC	1 cut(s)	312
BssT1I	CCWWGG	3 cut(s)	699, 880, 980
Bst2UI	CCWGG	1 cut(s)	1076
Bst4CI	ACNGT	5 cut(s)	393, 490, 637, 1204, 1395
Bst6I	CTCTTC	4 cut(s)	14, 19, 88, 936
BstACI	GRCGYC	1 cut(s)	312
BstC8I	GCNNGC	1 cut(s)	1439
BstDEI	CTNAG	4 cut(s)	371, 867, 911, 1502
BstDSI	CCRYGG	2 cut(s)	699, 1242
BstF5I	GGATG	3 cut(s)	347, 1266, 1296
BstKTI	GATC	6 cut(s)	85, 553, 682, 1038, 1545, 1558
BstMAI	GTCTC	2 cut(s)	380, 870
BstMBI	GATC	6 cut(s)	82, 550, 679, 1035, 1542, 1555
BstMWI	GCNNNNNNNGC	3 cut(s)	522, 1316, 1530
BstNI	CCWGG	1 cut(s)	1076
BstNSI	RCATGY	1 cut(s)	950
BstSCI	CCNGG	1 cut(s)	1074
BstSFI	CTRYAG	3 cut(s)	78, 785, 1320
BstSLI	GKGCMC	1 cut(s)	507
BstV1I	GCAGC	9 cut(s)	254, 771, 812, 916, 1096, 1306, 1334, 1545, 1652
BstV2I	GAAGAC	1 cut(s)	1348
BstX2I	RGATCY	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	679
BsuRI	GGCC	3 cut(s)	324, 369, 1178
BtgI	CCRYGG	2 cut(s)	699, 1242
BtsCI	GGATG	3 cut(s)	347, 1266, 1296
BtsI	GCAGTG	1 cut(s)	874
BtsIMutI	CAGTG	6 cut(s)	318, 486, 874, 1131, 1308, 1728
BveI	ACCTGC	1 cut(s)	778
Cac8I	GCNNGC	1 cut(s)	1439
CciI	TCATGA	1 cut(s)	451
Cfr13I	GGNCC	2 cut(s)	367, 1176
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	2 cut(s)	461, 1396
CviQI	GTAC	2 cut(s)	461, 1396
DdeI	CTNAG	4 cut(s)	371, 867, 911, 1502
DpnI	GATC	6 cut(s)	84, 552, 681, 1037, 1544, 1557
DpnII	GATC	6 cut(s)	82, 550, 679, 1035, 1542, 1555
DraI	TTTAAA	1 cut(s)	1656
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	4 cut(s)	14, 19, 88, 936
EarI	CTCTTC	4 cut(s)	14, 19, 88, 936
Eco130I	CCWWGG	3 cut(s)	699, 880, 980
EcoRI	GAATTC	1 cut(s)	1603
EcoRII	CCWGG	1 cut(s)	1074
EcoT14I	CCWWGG	3 cut(s)	699, 880, 980
ErhI	CCWWGG	3 cut(s)	699, 880, 980
FalI	AAGNNNNNCTT	6 cut(s)	447, 479, 826, 858, 873, 905
FaqI	GGGAC	1 cut(s)	62
FauNDI	CATATG	1 cut(s)	1043
FbaI	TGATCA	1 cut(s)	1542
FokI	GGATG	3 cut(s)	334, 1253, 1303
FspBI	CTAG	4 cut(s)	434, 441, 1608, 1683
GsaI	CCCAGC	1 cut(s)	670
GsuI	CTGGAG	2 cut(s)	519, 1137
HaeIII	GGCC	3 cut(s)	324, 369, 1178
HgaI	GACGC	1 cut(s)	320
Hin1I	GRCGYC	1 cut(s)	312
HindIII	AAGCTT	3 cut(s)	129, 523, 1480
HinfI	GANTC	5 cut(s)	71, 220, 327, 1216, 1469
HphI	GGTGA	3 cut(s)	202, 688, 1027
Hpy166II	GTNNAC	2 cut(s)	256, 1425
Hpy188I	TCNGA	4 cut(s)	291, 870, 1503, 1542
Hpy188III	TCNNGA	6 cut(s)	227, 379, 434, 452, 653, 1466
Hpy8I	GTNNAC	2 cut(s)	256, 1425
Hpy99I	CGWCG	1 cut(s)	551
HpyAV	CCTTC	8 cut(s)	527, 727, 730, 755, 840, 879, 1564, 1707
HpyCH4III	ACNGT	5 cut(s)	393, 490, 637, 1204, 1395
HpyF10VI	GCNNNNNNNGC	3 cut(s)	522, 1316, 1530
HpyF3I	CTNAG	4 cut(s)	371, 867, 911, 1502
Hsp92I	GRCGYC	1 cut(s)	312
Ksp22I	TGATCA	1 cut(s)	1542
Kzo9I	GATC	6 cut(s)	82, 550, 679, 1035, 1542, 1555
LguI	GCTCTTC	1 cut(s)	936
LmnI	GCTCC	4 cut(s)	4, 530, 1393, 1521
Lsp1109I	GCAGC	9 cut(s)	254, 771, 812, 916, 1096, 1306, 1334, 1545, 1652
LweI	GCATC	1 cut(s)	1269
MaeI	CTAG	4 cut(s)	434, 441, 1608, 1683
MaeIII	GTNAC	7 cut(s)	173, 271, 631, 715, 1198, 1561, 1726
MalI	GATC	6 cut(s)	84, 552, 681, 1037, 1544, 1557
MboI	GATC	6 cut(s)	82, 550, 679, 1035, 1542, 1555
MboII	GAAGA	9 cut(s)	31, 36, 105, 572, 583, 953, 1087, 1350, 1353
MfeI	CAATTG	2 cut(s)	384, 711
MflI	RGATCY	1 cut(s)	679
MhlI	GDGCHC	1 cut(s)	507
MlyI	GAGTC	1 cut(s)	1463
MmeI	TCCRAC	1 cut(s)	472
MseI	TTAA	4 cut(s)	170, 1058, 1232, 1655
MslI	CAYNNNNRTG	5 cut(s)	215, 1184, 1373, 1550, 1733
MspA1I	CMGCKG	1 cut(s)	1319
MspR9I	CCNGG	1 cut(s)	1076
MunI	CAATTG	2 cut(s)	384, 711
MvaI	CCWGG	1 cut(s)	1076
MwoI	GCNNNNNNNGC	3 cut(s)	522, 1316, 1530
NcoI	CCATGG	1 cut(s)	699
NdeI	CATATG	1 cut(s)	1043
NdeII	GATC	6 cut(s)	82, 550, 679, 1035, 1542, 1555
NlaIV	GGNNCC	2 cut(s)	6, 1177
NmuCI	GTSAC	5 cut(s)	271, 715, 1198, 1561, 1726
NspI	RCATGY	1 cut(s)	950
OliI	CACNNNNGTG	2 cut(s)	215, 1733
PagI	TCATGA	1 cut(s)	451
PciSI	GCTCTTC	1 cut(s)	936
PfeI	GAWTC	4 cut(s)	71, 220, 327, 1216
PleI	GAGTC	1 cut(s)	1463
PpsI	GAGTC	1 cut(s)	1463
Psp6I	CCWGG	1 cut(s)	1074
PspFI	CCCAGC	1 cut(s)	666
PspGI	CCWGG	1 cut(s)	1074
PspN4I	GGNNCC	2 cut(s)	6, 1177
PspPI	GGNCC	2 cut(s)	367, 1176
PstI	CTGCAG	2 cut(s)	789, 1324
PsuI	RGATCY	1 cut(s)	679
PvuII	CAGCTG	1 cut(s)	1319
RsaI	GTAC	2 cut(s)	462, 1397
RsaNI	GTAC	2 cut(s)	461, 1396
RseI	CAYNNNNRTG	5 cut(s)	215, 1184, 1373, 1550, 1733
SapI	GCTCTTC	1 cut(s)	936
SaqAI	TTAA	4 cut(s)	170, 1058, 1232, 1655
Sau3AI	GATC	6 cut(s)	82, 550, 679, 1035, 1542, 1555
Sau96I	GGNCC	2 cut(s)	367, 1176
SchI	GAGTC	1 cut(s)	1463
ScrFI	CCNGG	1 cut(s)	1076
SduI	GDGCHC	1 cut(s)	507
SfaNI	GCATC	1 cut(s)	1269
SfcI	CTRYAG	3 cut(s)	78, 785, 1320
SmiMI	CAYNNNNRTG	5 cut(s)	215, 1184, 1373, 1550, 1733
SsiI	CCGC	1 cut(s)	1612
SspMI	CTAG	4 cut(s)	434, 441, 1608, 1683
StyD4I	CCNGG	1 cut(s)	1074
StyI	CCWWGG	3 cut(s)	699, 880, 980
TaaI	ACNGT	5 cut(s)	393, 490, 637, 1204, 1395
TatI	WGTACW	1 cut(s)	1395
TauI	GCSGC	1 cut(s)	1614
TfiI	GAWTC	4 cut(s)	71, 220, 327, 1216
Tru1I	TTAA	4 cut(s)	170, 1058, 1232, 1655
Tru9I	TTAA	4 cut(s)	170, 1058, 1232, 1655
TscAI	CASTG	6 cut(s)	325, 493, 881, 1138, 1308, 1735
TseFI	GTSAC	5 cut(s)	271, 715, 1198, 1561, 1726
TseI	GCWGC	9 cut(s)	242, 784, 800, 929, 1109, 1319, 1322, 1533, 1640
Tsp45I	GTSAC	5 cut(s)	271, 715, 1198, 1561, 1726
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	6 cut(s)	325, 493, 881, 1138, 1308, 1735
XapI	RAATTY	4 cut(s)	155, 447, 1603, 1657
XbaI	TCTAGA	1 cut(s)	433
XceI	RCATGY	1 cut(s)	950
XspI	CTAG	4 cut(s)	434, 441, 1608, 1683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.