Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003626

Physical Location & Seq

Genomic Coordinates Forward (+)

5822394 .. 5827305

Gene Structure 4912 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0073800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2700 bp

ATGGAGGTTGAGAAAAAACGTTCAAAAGGGTTTTTCAATTTATTTGATTGGAATGGCAAATCTCGGAAGAAGCTCTTCTCCAGCAATTCTGAATCATCAGGATCACAGCAAGGAAAAGAGAATGTGGAGAATTTCTCGCAGACACGGCTCAATAGGGTTGAGGTGGATGAGAAAGGAGCAAGTTCAAGTAATAAAGGAAGCAGCGATTGGAATTGTGCTTCGTCAGTGACTAGTGATGAAGGAGGTGGGAGTAGAGCCCCTGGGGTAGTTGCTAGATTAATGGGTCTTGATTCATTGCCAACTTCAACGGTTACTGATTCATCTTCTACCTTATCAATCGACTCCCACTCACTTAGAGTACCTCATCATGACAGGGTCAATCCTAATTTGTGGGGTGATTTTTATGCCATGGATTACATGAATATGCCCAACAAGCTGGATACAGTTTCAAGGAATCCTGTAGAATCTAGGGCACAGAGGGTGCAAAACCGGCCAATTGAGAGATTTCAAACAGAAGTCTTGCCTCCAAAATCAGCCAAGTCAATTCCAGTTACTCACCATAAGCTTTTGTCACCTATCAAGACTCCTGGCTTCATCCCAACAAAGAATGCAGCTTACATAATGGAAGCAGCTGCAAAGATGATTGAGACAAGTCCTAGAGAATCTTCCAAGAGCGAAATGTCATCTATGAGATCATCTTCAATTCCATTGAGAATTCGGGATTTGAAAGAGAAAATGGAAGTTGTGTCTAAAGTATCAAGACCTGAACGACCCAAGGGACCTAGTGATGCTAAATATATGAAAGGAAGGCCTGGTTACAGGAGCTATAATGGGTCAGATAATGTACCAGTACCCAAGGCTTCTGTGGATTCAGAAAAACAGAATTACAATGATATAAGGAATAAGGGAAAAGCCGTACCACTTGCAGTACAAGCAAAGGCCAATGTTCAGAGAAAGGAAGGGTCCCCTCCTCTCAGTAATAGGAGTTTCGCAGACCAGAAGGAACAGAATGAGGTCAAACAAATTGAGTTCTCCAAGAGCCGGCAAAGCACACAGAGACCTGTGCATAAGAGAACTTCTGCTGTCAGCAACAAAAGTGTTCTCAAGCAGAACAACCAGAAGCAGAATTGTGTATCTAACAGAGATAAAATGACTTCAAAGAATGTGGTTCCTAATCAACCTTCTAGAAGAATGCGGTCAACTAATGGCTCTAGTCGGCCAAATAGGACTGTAAATAAGGTTCTTATAAACTCTGAAACTGGATCAAGAAAGATGGGCTCAGTGGCAACTGCTACCGGAAAGGACTTCTCATTCTCCACAGTTAAAGATGTGTCTGGGAAGATACGGTCTGCTAGTCAGGACTTTCATTTAGAAGAAACTGCTGCTGATAATGGATTGATCGGTAAGGATGAAAGGTCTGTAAAATGTAATGTTGCAATGGAGGGGTACACCAATTTGTGCACGGATAATAGAAAACAAGACATGGATGTTGTTTCATTTACATTCACGTCTCCCCTGAAAAAATCCATTTCTGAATTGCAGTCCACTGGCCAAGTTGTGAGTATGAATAACAGATTTTGTATTGATTCTTTTGGTAATAATGATCAGCACAGCTACCCAGAGCATTTTACATTTTCTTCACCTGGGTTGAATGTGATTGGTGGTGATGCTTTGAGTGTTCTTTTGGAACAAAAGCTTCAAGAATTGACATGCAAAGTTGAGTCATCTCAGCATAACCTGTTTGGTGAAGGGACTTCTGCTAGTTCTTCGTCTAGCTTGCAAGATTTGGTTTCCAGTGAGGCAAGCACCACATCAAGAGGCAAGAAGTTCGAACTTGGTTTGCTCAGAGATAAAGTTGATGACATAGCGGACTTTGATTTTCCGTCACCTGATGTAAACCAAAAGTGGCAGGGACCAGAAGGGATGGAAGAGTGTAGCAGTAGCAGCAAAAACAGTGGAACTGGAAAGGATTTTAATTATCATCTTAACCCAGTTTCAGTTTTTGGACCCTCATTTGAGAGTGGAAGCTGCACAGATAACAGAAGCAGTGCCAATGGATGTGAGAGTGAGAGGTGTTCATTTGCTCAAGCTCAAGATCAAATCAATTTATTCTCCACATTTGAAATCCAACCATGTGGTGCTTCCGAGTTATCTGACTCGGCCTTCTATTGGGAAGTGAGTGGAAAAAATATGACTAGAATATTTGGTTTTCATTCTCCCAATCAATCAAACGATTGGGAACGAGAATATGTGCAGTATATACTTAGCAAGGTGGACTTAGTGATTGAAGATTTTGCATTGGGTGATGCCGACTATGCTATTTCCCCAAATCTCTTTGATAATTTACACTATCAAGAAGAGTATCCGAAGCTCCAGCAGAAGCTCTTGTTTGACAGTGTAAACGAAAGCCTGCACAACAGATGCAGGCAAATTGTTGTTGGAAGCTGGAAAGCATGGGATAGATGGGAGACATTGTCGCAGAGGAAGGAATCATTGGCTGAGGAACTGTATAAAGAGATTTCGGTTTGGAAAAATATGGGGGACTTGATGGCCGATGACCTTGTCGACAAGGACATGAGCACTCAGCGTGGGAGATGGCTCGACTTTGAGATTGAAGCATTTGAGGAAGCTGTAGAGATTGAGAAGGGAATACTAGGTTGTTTAGTAGATGAGTTAGTATCTGATTTTCTGCTGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

899

Amino Acids

100.31

Weight (kDa)

6.59

Isoelectric Point (pI)

55.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VARLMGL	PF14383	74 - 104	1.7e-14	DUF761-associated sequence motif
DUF4378	PF14309	748 - 891	2.2e-29	Domain of unknown function (DUF4378)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37900 AT2G37900 AT3G53960
fragaria_vesca	FvH4_6g12770 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570
malus_domestica	MD01G1141500.v1.1 MD04G1138500.v1.1 MD07G1205700.v1.1 MD12G1153900.v1.1 MD12G1154200.v1.1
prunus_persica	Prupe.2G241800_v2.0.a1 Prupe.6G264100_v2.0.a1
pyrus_communis	pycom04g12670 pycom07g19250 pycom12g14650
rosa_chinensis	RchiOBHm_Chr1g0368741 RchiOBHm_Chr3g0464761
rosa_laevigata	RLG00000024674 RLG00000027192
rosa_multiflora	Rmu_sc0001791.1_g000017 Rmu_sc0007114.1_g000013
rosa_roxburghii	Rroxscaffold_4G00288310 Rroxscaffold_6G00415440
rosa_rugosa	Rorug01G0344800 Rorug03G0073800 Rorug03G0073900
rosa_samantha	Rh1AG351700 Rh1BG315400 Rh3DG137900
rosa_wichuraiana	Rw3G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1247
AccI	GTMKAC	1 cut(s)	2565
AciI	CCGC	2 cut(s)	1195, 1868
AclI	AACGTT	1 cut(s)	19
AclWI	GGATC	2 cut(s)	109, 1270
AcoI	YGGCCR	4 cut(s)	491, 1217, 1549, 2550
AcsI	RAATTY	2 cut(s)	130, 714
AfaI	GTAC	6 cut(s)	360, 846, 852, 918, 930, 1448
AfiI	CCNNNNNNNGG	2 cut(s)	1041, 2169
AhlI	ACTAGT	1 cut(s)	230
AjiI	CACGTC	1 cut(s)	1509
AjnI	CCWGG	4 cut(s)	259, 586, 811, 1642
AjuI	GAANNNNNNNTTGG	4 cut(s)	190, 222, 2477, 2509
Alw21I	GWGCWC	2 cut(s)	1463, 2582
Alw26I	GTCTC	4 cut(s)	641, 1051, 1515, 2462
Alw44I	GTGCAC	1 cut(s)	1459
AlwI	GGATC	2 cut(s)	109, 1270
AoxI	GGCC	7 cut(s)	491, 809, 939, 1217, 1549, 2160, 2550
ApaLI	GTGCAC	1 cut(s)	1459
ApeKI	GCWGC	7 cut(s)	201, 611, 629, 632, 1382, 1944, 2028
ApoI	RAATTY	2 cut(s)	130, 714
AseI	ATTAAT	1 cut(s)	278
Asp700I	GAANNNNTTC	1 cut(s)	74
AspS9I	GGNCC	4 cut(s)	779, 963, 1913, 2006
AsuHPI	GGTGA	8 cut(s)	407, 548, 564, 1632, 1676, 1757, 1878, 2315
AsuII	TTCGAA	1 cut(s)	1830
AvaII	GGWCC	4 cut(s)	779, 963, 1913, 2006
BaeGI	GKGCMC	2 cut(s)	475, 1463
BalI	TGGCCA	1 cut(s)	1551
BanII	GRGCYC	2 cut(s)	259, 1280
Bbv12I	GWGCWC	2 cut(s)	1463, 2582
BbvCI	CCTCAGC	1 cut(s)	2499
BbvI	GCAGC	7 cut(s)	213, 619, 623, 641, 1369, 1956, 2015
BccI	CCATC	5 cut(s)	1267, 1918, 2457, 2542, 2589
BceAI	ACGGC	2 cut(s)	161, 899
BcgI	CGANNNNNNTGC	2 cut(s)	1810, 1844
BciT130I	CCWGG	4 cut(s)	261, 588, 813, 1644
BciVI	GTATCC	2 cut(s)	433, 2373
BclI	TGATCA	1 cut(s)	1603
BcoDI	GTCTC	4 cut(s)	641, 1051, 1515, 2462
BcuI	ACTAGT	1 cut(s)	230
BfmI	CTRYAG	2 cut(s)	459, 2631
BfuI	GTATCC	2 cut(s)	433, 2373
BisI	GCNGC	7 cut(s)	202, 612, 630, 633, 1383, 1945, 2029
BlsI	GCNGC	7 cut(s)	203, 613, 631, 634, 1384, 1946, 2030
Bme1390I	CCNGG	4 cut(s)	261, 588, 813, 1644
Bme18I	GGWCC	4 cut(s)	779, 963, 1913, 2006
BmgBI	CACGTC	1 cut(s)	1509
BmgT120I	GGNCC	4 cut(s)	779, 963, 1913, 2006
BmiI	GGNNCC	6 cut(s)	780, 964, 965, 1170, 1914, 2008
BmrFI	CCNGG	4 cut(s)	261, 588, 813, 1644
BmrI	ACTGGG	1 cut(s)	1985
BmsI	GCATC	4 cut(s)	778, 1657, 2296, 2411
BmuI	ACTGGG	1 cut(s)	1985
BplI	GAGNNNNNCTC	2 cut(s)	119, 151
BpmI	CTGGAG	2 cut(s)	64, 2357
Bpu10I	CCTNAGC	1 cut(s)	2499
Bpu14I	TTCGAA	1 cut(s)	1830
BpuEI	CTTGAG	3 cut(s)	1088, 2070, 2076
BsaI	GGTCTC	1 cut(s)	1051
BsaJI	CCNNGG	6 cut(s)	259, 260, 408, 774, 855, 1643
BsaWI	WCCGGW	1 cut(s)	1295
BsaXI	ACNNNNNCTCC	2 cut(s)	2459, 2489
Bsc4I	CCNNNNNNNGG	2 cut(s)	1041, 2169
Bse118I	RCCGGY	2 cut(s)	489, 1041
Bse1I	ACTGG	7 cut(s)	548, 848, 1264, 1552, 1794, 1966, 1991
Bse3DI	GCAATG	2 cut(s)	293, 1443
BseBI	CCWGG	4 cut(s)	261, 588, 813, 1644
BseDI	CCNNGG	6 cut(s)	259, 260, 408, 774, 855, 1643
BseGI	GGATG	6 cut(s)	172, 594, 1414, 1492, 1929, 2063
BseLI	CCNNNNNNNGG	2 cut(s)	1041, 2169
BseMI	GCAATG	2 cut(s)	293, 1443
BseMII	CTCAG	6 cut(s)	988, 1293, 1742, 1858, 2490, 2597
BseNI	ACTGG	7 cut(s)	548, 848, 1264, 1552, 1794, 1966, 1991
BseRI	GAGGAG	1 cut(s)	960
BseSI	GKGCMC	2 cut(s)	475, 1463
BseXI	GCAGC	7 cut(s)	213, 619, 623, 641, 1369, 1956, 2015
BsgI	GTGCAG	3 cut(s)	2014, 2273, 2396
BshFI	GGCC	7 cut(s)	493, 811, 941, 1219, 1551, 2162, 2552
BsiHKAI	GWGCWC	2 cut(s)	1463, 2582
BsiSI	CCGG	3 cut(s)	490, 1042, 1296
BslFI	GGGAC	5 cut(s)	792, 949, 1765, 1926, 2555
BslI	CCNNNNNNNGG	2 cut(s)	1041, 2169
BsmAI	GTCTC	4 cut(s)	641, 1051, 1515, 2462
BsmBI	CGTCTC	1 cut(s)	1515
BsmFI	GGGAC	5 cut(s)	792, 949, 1765, 1926, 2555
BsmI	GAATGC	2 cut(s)	613, 1197
BsnI	GGCC	7 cut(s)	493, 811, 941, 1219, 1551, 2162, 2552
Bso31I	GGTCTC	1 cut(s)	1051
Bsp119I	TTCGAA	1 cut(s)	1830
Bsp1286I	GDGCHC	5 cut(s)	259, 475, 1280, 1463, 2582
Bsp143I	GATC	6 cut(s)	101, 692, 1262, 1398, 1603, 2095
Bsp19I	CCATGG	1 cut(s)	408
BspACI	CCGC	2 cut(s)	1195, 1868
BspANI	GGCC	7 cut(s)	493, 811, 941, 1219, 1551, 2162, 2552
BspCNI	CTCAG	6 cut(s)	987, 1292, 1741, 1857, 2491, 2596
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	6 cut(s)	780, 964, 965, 1170, 1914, 2008
BspPI	GGATC	2 cut(s)	109, 1270
BspQI	GCTCTTC	1 cut(s)	80
BspT104I	TTCGAA	1 cut(s)	1830
BspTNI	GGTCTC	1 cut(s)	1051
BsrDI	GCAATG	2 cut(s)	293, 1443
BsrFI	RCCGGY	2 cut(s)	489, 1041
BsrI	ACTGG	7 cut(s)	548, 848, 1264, 1552, 1794, 1966, 1991
BssAI	RCCGGY	2 cut(s)	489, 1041
BssECI	CCNNGG	6 cut(s)	259, 260, 408, 774, 855, 1643
BssMI	GATC	6 cut(s)	101, 692, 1262, 1398, 1603, 2095
BssT1I	CCWWGG	3 cut(s)	408, 774, 855
Bst2UI	CCWGG	4 cut(s)	261, 588, 813, 1644
Bst4CI	ACNGT	8 cut(s)	310, 445, 1231, 1321, 1347, 1955, 2396, 2508
Bst6I	CTCTTC	3 cut(s)	80, 1923, 2352
BstBI	TTCGAA	1 cut(s)	1830
BstC8I	GCNNGC	5 cut(s)	1043, 1778, 1804, 2411, 2426
BstDEI	CTNAG	9 cut(s)	353, 974, 1279, 1728, 1844, 2264, 2278, 2499, 2583
BstDSI	CCRYGG	1 cut(s)	408
BstF5I	GGATG	6 cut(s)	172, 594, 1414, 1492, 1929, 2063
BstKTI	GATC	6 cut(s)	104, 695, 1265, 1401, 1606, 2098
BstMAI	GTCTC	4 cut(s)	641, 1051, 1515, 2462
BstMBI	GATC	6 cut(s)	101, 692, 1262, 1398, 1603, 2095
BstMWI	GCNNNNNNNGC	7 cut(s)	145, 433, 490, 932, 1047, 1944, 2315
BstNI	CCWGG	4 cut(s)	261, 588, 813, 1644
BstNSI	RCATGY	1 cut(s)	1713
BstSCI	CCNGG	4 cut(s)	259, 586, 811, 1642
BstSFI	CTRYAG	2 cut(s)	459, 2631
BstSLI	GKGCMC	2 cut(s)	475, 1463
BstV1I	GCAGC	7 cut(s)	213, 619, 623, 641, 1369, 1956, 2015
BstXI	CCANNNNNNTGG	2 cut(s)	436, 2135
BsuI	GTATCC	2 cut(s)	433, 2373
BsuRI	GGCC	7 cut(s)	493, 811, 941, 1219, 1551, 2162, 2552
BtgI	CCRYGG	1 cut(s)	408
BtrI	CACGTC	1 cut(s)	1509
BtsCI	GGATG	6 cut(s)	172, 594, 1414, 1492, 1929, 2063
BtsI	GCAGTG	1 cut(s)	2053
BtsIMutI	CAGTG	7 cut(s)	231, 1287, 1545, 1801, 1960, 2053, 2401
Cac8I	GCNNGC	5 cut(s)	1043, 1778, 1804, 2411, 2426
CciI	TCATGA	1 cut(s)	367
Cfr10I	RCCGGY	2 cut(s)	489, 1041
Cfr13I	GGNCC	4 cut(s)	779, 963, 1913, 2006
Csp6I	GTAC	6 cut(s)	359, 845, 851, 917, 929, 1447
CspCI	CAANNNNNGTGG	4 cut(s)	1146, 1181, 1936, 1971
CviAII	CATG	8 cut(s)	368, 409, 418, 1483, 1710, 2133, 2454, 2575
CviQI	GTAC	6 cut(s)	359, 845, 851, 917, 929, 1447
DdeI	CTNAG	9 cut(s)	353, 974, 1279, 1728, 1844, 2264, 2278, 2499, 2583
DpnI	GATC	6 cut(s)	103, 694, 1264, 1400, 1605, 2097
DpnII	GATC	6 cut(s)	101, 692, 1262, 1398, 1603, 2095
EaeI	YGGCCR	4 cut(s)	491, 1217, 1549, 2550
Eam1104I	CTCTTC	3 cut(s)	80, 1923, 2352
EarI	CTCTTC	3 cut(s)	80, 1923, 2352
Eco130I	CCWWGG	3 cut(s)	408, 774, 855
Eco147I	AGGCCT	1 cut(s)	811
Eco24I	GRGCYC	2 cut(s)	259, 1280
Eco31I	GGTCTC	1 cut(s)	1051
Eco47I	GGWCC	4 cut(s)	779, 963, 1913, 2006
EcoO109I	RGGNCCY	2 cut(s)	779, 963
EcoRI	GAATTC	1 cut(s)	714
EcoRII	CCWGG	4 cut(s)	259, 586, 811, 1642
EcoT14I	CCWWGG	3 cut(s)	408, 774, 855
EcoT38I	GRGCYC	2 cut(s)	259, 1280
ErhI	CCWWGG	3 cut(s)	408, 774, 855
Esp3I	CGTCTC	1 cut(s)	1515
FaeI	CATG	8 cut(s)	371, 412, 421, 1486, 1713, 2136, 2457, 2578
FalI	AAGNNNNNCTT	4 cut(s)	59, 91, 2261, 2293
FaqI	GGGAC	5 cut(s)	792, 949, 1765, 1926, 2555
FatI	CATG	8 cut(s)	367, 408, 417, 1482, 1709, 2132, 2453, 2574
FbaI	TGATCA	1 cut(s)	1603
FblI	GTMKAC	1 cut(s)	2565
Fnu4HI	GCNGC	7 cut(s)	202, 612, 630, 633, 1383, 1945, 2029
FokI	GGATG	6 cut(s)	179, 581, 1421, 1499, 1936, 2070
FriOI	GRGCYC	2 cut(s)	259, 1280
Fsp4HI	GCNGC	7 cut(s)	202, 612, 630, 633, 1383, 1945, 2029
GluI	GCNGC	7 cut(s)	202, 612, 630, 633, 1383, 1945, 2029
GsuI	CTGGAG	2 cut(s)	64, 2357
HaeIII	GGCC	7 cut(s)	493, 811, 941, 1219, 1551, 2162, 2552
HapII	CCGG	3 cut(s)	490, 1042, 1296
Hin1II	CATG	8 cut(s)	371, 412, 421, 1486, 1713, 2136, 2457, 2578
HincII	GTYRAC	2 cut(s)	1200, 2566
HindII	GTYRAC	2 cut(s)	1200, 2566
HindIII	AAGCTT	2 cut(s)	563, 1694
HpaII	CCGG	3 cut(s)	490, 1042, 1296
HphI	GGTGA	8 cut(s)	407, 548, 564, 1632, 1676, 1757, 1878, 2315
Hpy166II	GTNNAC	8 cut(s)	1200, 1449, 1461, 1545, 1897, 2275, 2401, 2566
Hpy8I	GTNNAC	8 cut(s)	1200, 1449, 1461, 1545, 1897, 2275, 2401, 2566
HpyCH4III	ACNGT	8 cut(s)	310, 445, 1231, 1321, 1347, 1955, 2396, 2508
HpyCH4IV	ACGT	2 cut(s)	19, 1508
HpyF10VI	GCNNNNNNNGC	7 cut(s)	145, 433, 490, 932, 1047, 1944, 2315
HpyF3I	CTNAG	9 cut(s)	353, 974, 1279, 1728, 1844, 2264, 2278, 2499, 2583
HpySE526I	ACGT	2 cut(s)	19, 1508
Hsp92II	CATG	8 cut(s)	371, 412, 421, 1486, 1713, 2136, 2457, 2578
KflI	GGGWCCC	1 cut(s)	963
KroI	GCCGGC	1 cut(s)	1041
KroNI	GCCGGC	1 cut(s)	1043
Ksp22I	TGATCA	1 cut(s)	1603
Kzo9I	GATC	6 cut(s)	101, 692, 1262, 1398, 1603, 2095
LguI	GCTCTTC	1 cut(s)	80
LmnI	GCTCC	3 cut(s)	176, 822, 2376
Lsp1109I	GCAGC	7 cut(s)	213, 619, 623, 641, 1369, 1956, 2015
LweI	GCATC	4 cut(s)	778, 1657, 2296, 2411
MaeII	ACGT	2 cut(s)	19, 1508
MaeIII	GTNAC	6 cut(s)	226, 310, 550, 570, 815, 1884
MalI	GATC	6 cut(s)	103, 694, 1264, 1400, 1605, 2097
MboI	GATC	6 cut(s)	101, 692, 1262, 1398, 1603, 2095
MfeI	CAATTG	1 cut(s)	495
MhlI	GDGCHC	5 cut(s)	259, 475, 1280, 1463, 2582
MlsI	TGGCCA	1 cut(s)	1551
MluNI	TGGCCA	1 cut(s)	1551
MlyI	GAGTC	4 cut(s)	335, 577, 1730, 2150
MmeI	TCCRAC	2 cut(s)	2152, 2419
Mox20I	TGGCCA	1 cut(s)	1551
MroNI	GCCGGC	1 cut(s)	1041
MroXI	GAANNNNTTC	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	1551
MseI	TTAA	4 cut(s)	278, 1323, 1974, 1986
MslI	CAYNNNNRTG	1 cut(s)	422
Msp20I	TGGCCA	1 cut(s)	1551
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	3 cut(s)	490, 1042, 1296
MspR9I	CCNGG	4 cut(s)	261, 588, 813, 1644
MunI	CAATTG	1 cut(s)	495
Mva1269I	GAATGC	2 cut(s)	613, 1197
MvaI	CCWGG	4 cut(s)	261, 588, 813, 1644
MwoI	GCNNNNNNNGC	7 cut(s)	145, 433, 490, 932, 1047, 1944, 2315
NaeI	GCCGGC	1 cut(s)	1043
NcoI	CCATGG	1 cut(s)	408
NdeII	GATC	6 cut(s)	101, 692, 1262, 1398, 1603, 2095
NgoMIV	GCCGGC	1 cut(s)	1041
NlaIII	CATG	8 cut(s)	371, 412, 421, 1486, 1713, 2136, 2457, 2578
NlaIV	GGNNCC	6 cut(s)	780, 964, 965, 1170, 1914, 2008
NmeAIII	GCCGAG	1 cut(s)	2138
NmuCI	GTSAC	3 cut(s)	226, 570, 1884
NspI	RCATGY	1 cut(s)	1713
NspV	TTCGAA	1 cut(s)	1830
PagI	TCATGA	1 cut(s)	367
PasI	CCCWGGG	1 cut(s)	260
PceI	AGGCCT	1 cut(s)	811
PciSI	GCTCTTC	1 cut(s)	80
PctI	GAATGC	2 cut(s)	613, 1197
PdiI	GCCGGC	1 cut(s)	1043
PdmI	GAANNNNTTC	1 cut(s)	74
PfeI	GAWTC	9 cut(s)	92, 290, 317, 454, 464, 662, 869, 1586, 2489
PflFI	GACNNNGTC	3 cut(s)	374, 2473, 2561
PkrI	GCNGC	7 cut(s)	203, 613, 631, 634, 1384, 1946, 2030
PleI	GAGTC	4 cut(s)	335, 577, 1729, 2150
PpsI	GAGTC	4 cut(s)	335, 577, 1729, 2150
PpuMI	RGGWCCY	2 cut(s)	779, 963
PshBI	ATTAAT	1 cut(s)	278
PsiI	TTATAA	1 cut(s)	1247
Psp1406I	AACGTT	1 cut(s)	19
Psp5II	RGGWCCY	2 cut(s)	779, 963
Psp6I	CCWGG	4 cut(s)	259, 586, 811, 1642
PspGI	CCWGG	4 cut(s)	259, 586, 811, 1642
PspN4I	GGNNCC	6 cut(s)	780, 964, 965, 1170, 1914, 2008
PspPI	GGNCC	4 cut(s)	779, 963, 1913, 2006
PspPPI	RGGWCCY	2 cut(s)	779, 963
PsrI	GAACNNNNNNTAC	2 cut(s)	1224, 1256
PsyI	GACNNNGTC	3 cut(s)	374, 2473, 2561
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	6 cut(s)	360, 846, 852, 918, 930, 1448
RsaNI	GTAC	6 cut(s)	359, 845, 851, 917, 929, 1447
RseI	CAYNNNNRTG	1 cut(s)	422
SalI	GTCGAC	1 cut(s)	2564
SapI	GCTCTTC	1 cut(s)	80
SaqAI	TTAA	4 cut(s)	278, 1323, 1974, 1986
SatI	GCNGC	7 cut(s)	202, 612, 630, 633, 1383, 1945, 2029
Sau3AI	GATC	6 cut(s)	101, 692, 1262, 1398, 1603, 2095
Sau96I	GGNCC	4 cut(s)	779, 963, 1913, 2006
SchI	GAGTC	4 cut(s)	335, 577, 1730, 2150
ScrFI	CCNGG	4 cut(s)	261, 588, 813, 1644
SduI	GDGCHC	5 cut(s)	259, 475, 1280, 1463, 2582
SfaNI	GCATC	4 cut(s)	778, 1657, 2296, 2411
SfcI	CTRYAG	2 cut(s)	459, 2631
SfuI	TTCGAA	1 cut(s)	1830
SinI	GGWCC	4 cut(s)	779, 963, 1913, 2006
SmiMI	CAYNNNNRTG	1 cut(s)	422
SmlI	CTYRAG	3 cut(s)	1103, 2085, 2091
SmoI	CTYRAG	3 cut(s)	1103, 2085, 2091
SpeI	ACTAGT	1 cut(s)	230
SseBI	AGGCCT	1 cut(s)	811
SsiI	CCGC	2 cut(s)	1195, 1868
SspI	AATATT	1 cut(s)	2202
StuI	AGGCCT	1 cut(s)	811
StyD4I	CCNGG	4 cut(s)	259, 586, 811, 1642
StyI	CCWWGG	3 cut(s)	408, 774, 855
TaaI	ACNGT	8 cut(s)	310, 445, 1231, 1321, 1347, 1955, 2396, 2508
TaiI	ACGT	2 cut(s)	22, 1511
TaqI	TCGA	4 cut(s)	339, 1830, 2565, 2601
TatI	WGTACW	1 cut(s)	928
TfiI	GAWTC	9 cut(s)	92, 290, 317, 454, 464, 662, 869, 1586, 2489
Tru1I	TTAA	4 cut(s)	278, 1323, 1974, 1986
Tru9I	TTAA	4 cut(s)	278, 1323, 1974, 1986
TscAI	CASTG	7 cut(s)	231, 1287, 1552, 1801, 1960, 2053, 2401
TseFI	GTSAC	3 cut(s)	226, 570, 1884
TseI	GCWGC	7 cut(s)	201, 611, 629, 632, 1382, 1944, 2028
Tsp45I	GTSAC	3 cut(s)	226, 570, 1884
TspGWI	ACGGA	2 cut(s)	1478, 1872
TspRI	CASTG	7 cut(s)	231, 1287, 1552, 1801, 1960, 2053, 2401
Tth111I	GACNNNGTC	3 cut(s)	374, 2473, 2561
VneI	GTGCAC	1 cut(s)	1459
VpaK11BI	GGWCC	4 cut(s)	779, 963, 1913, 2006
VspI	ATTAAT	1 cut(s)	278
XapI	RAATTY	2 cut(s)	130, 714
XbaI	TCTAGA	1 cut(s)	1184
XceI	RCATGY	1 cut(s)	1713
XcmI	CCANNNNNNNNNTGG	1 cut(s)	862
XmiI	GTMKAC	1 cut(s)	2565
XmnI	GAANNNNTTC	1 cut(s)	74

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.