RchiOBHm_Chr3g0464761

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Forward (+)
11751477 .. 11756389
4913 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ43097

Sequence Viewer

Length: 1824 bp
ATGTCATTTTGTAGTTCATGGCACGGTTTTGTTTTTATTATTGAAATAGTTGTAGACTTGTTAATTTGGTGTCTTGGAAGTTTTATTGTTGTTGCTCAAGAAATTAATGTATTAATCTCACAAGTTGTACATTATGGAGGTAGTAGACCCGTGATCCCAACCCCAGCCATCACTGATAGTGTATATCGCAGCAGAACAATTGAGTTCAGTGAGAGGCTGAGTTACTTTGGAATAGCAACCAGTTTAATTATTTACCTGACCAAAGTAATTCATGAAGACCTCAAGAGTGCAGCAAAGAGTGTCAACTATTGGTCTGGTGTTACCACAATGATTCCATTCTTTGGAGGCTTCATAGCTGATGCTTATTTGGGTCGCTTCTCAACTGTTCTGGTCTCATCCATCATTTACCTTCTGGGTTTGATTCTTCTATCCATGTCCTGGTTTGTACCAACCCTAAGGCCTTGTGACACACATCCATGTCTTGAACCAAGAAAAATCCATGAAGTGGTGTTCTTCCTAGCCATATACATGATCTCCATAGGAACTGGAGGCCATAAACCCTCTTTGGAGAGCTTTGGAGCTGACCAATTTGATGATGATCACACTGAAGAAAGAAAGCAAAAGATGTCCTACTTCAATTGGTGGAACTTTGGGCTTTGCTGTGGTCTTTTGCTTGGGGTGACTGTGGTTGTCTACGTACAAGACCATGTAAGTTGGGGTGTCGCAGATATAGTTCTCATGGCAGTCATGGGTACCTCGCTGGTTATCTTCATTGTTGGGAGGCCGTTTTACCGCTATCGAAGACCTACAGGAAGCCCCCTGACACCAATGCTGCAGGTTCTTGTAGCGGCCATTGCGAAGAGAAAGCTGCCATATCCTTCTGATCCTGCTCAATTGTATGAAATTTCCCAGTCGGAGAAGGTCCGTGGGAGGCTTTTGTGCCACACCAACAAGCTCAAATTTCTTGACAAGGCAGCCATCATAAGCACAGAAAATTCAGCTGAGAAGCAAAATCCTTGGACTCTTGCAACAGTAACAAAGGTCGAGGAGATGAAACTAGTCCTCAACATTATCCCCATTTGGCTAGCCACCCTACCATTTGGAATGTGTGTAGCACAAACCTCTACGTTCTTCATCAAACAAGGTGTCTCCATGAACCGAAGCATCGCCAACGGTTTCGAGATCCCCCCTGCCTCAATCTACTCTCTCGCAGCCATCGGAATGATCATATCCGTCACGTTCTACGAGAAAATCCTAGTCCCCGTCATGCGAAGAACAACTGGAAACGAAAGGGGAATCAACATCCTCCAGAGAATCGGAATTGGAATGCTCTTCTTAATCGGCACAATGGTAGCAGCTGCCTTGGTGGAGAAGAAAAGACTAGGGATTGTTGAGAAAGACCCTTTAAAGAGTTCACATTCCATGAGTGTGTTCTGGTTAGCACCCCAATTTGTGATAATTGGATTTGGAGATGGGTTTACTCTTGTAGGTCTACAGGAGTATTTCTACGACCAAGTTCCGGACTCCATGAGGAGCTTGGGAATTGCGTTTTACCTTGGTGTAATTGGAGCTGGAAATTTTCTCAGTAGCCTCTTGATCACGGCCATTGATCACATCACAGAGCAAAGGGGGAAAAGTTGGTTTGGTAAGGATTTGAATAGTAGTCGTTTGGACAAGTTTTACTGGCTATTGGCTTGTATGGCTGCAGCAAATTTGTGTGTTTATGTGTTTTTGGCTCGGCGTTACTCTTACAAGAATGTGCAGAAGGTAGCTGTGGTCGACTGCTATGAAGGTGAAGAGGAAAAGGGCGGTTCATTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

607

Amino Acids

67.76

Weight (kDa)

8.59

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 74 - 529 8.3e-10 Major Facilitator Superfamily
PTR2 PF00854 126 - 542 3.1e-88 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 826
Acc65I GGTACC 1 cut(s) 752
AccB1I GGYRCC 1 cut(s) 752
AccB7I CCANNNNNTGG 3 cut(s) 341, 438, 505
AccI GTMKAC 5 cut(s) 54, 145, 693, 1492, 1779
AccIII TCCGGA 1 cut(s) 1519
AciI CCGC 3 cut(s) 793, 848, 1809
AclWI GGATC 3 cut(s) 148, 878, 1177
AcoI YGGCCR 2 cut(s) 849, 1602
AcsI RAATTY 5 cut(s) 903, 959, 994, 1576, 1711
AcuI CTGAAG 1 cut(s) 627
AfaI GTAC 4 cut(s) 129, 447, 699, 754
AfiI CCNNNNNNNGG 4 cut(s) 341, 438, 505, 1519
AgsI TTSAA 4 cut(s) 44, 485, 637, 1657
AhlI ACTAGT 1 cut(s) 1057
AjnI CCWGG 1 cut(s) 437
Alw26I GTCTC 2 cut(s) 397, 1153
AlwI GGATC 3 cut(s) 148, 878, 1177
Aor13HI TCCGGA 1 cut(s) 1519
AoxI GGCC 5 cut(s) 458, 550, 782, 849, 1602
ApoI RAATTY 5 cut(s) 903, 959, 994, 1576, 1711
ArsI GACNNNNNNTTYG 2 cut(s) 1131, 1163
AseI ATTAAT 2 cut(s) 105, 113
Asp718I GGTACC 1 cut(s) 752
AspS9I GGNCC 1 cut(s) 922
AsuHPI GGTGA 2 cut(s) 691, 1805
AsuNHI GCTAGC 1 cut(s) 1084
AvaII GGWCC 1 cut(s) 922
AxyI CCTNAGG 1 cut(s) 455
BanI GGYRCC 1 cut(s) 752
BbsI GAAGAC 2 cut(s) 282, 808
BccI CCATC 5 cut(s) 176, 407, 986, 1223, 1466
BceAI ACGGC 2 cut(s) 769, 1617
BciT130I CCWGG 1 cut(s) 439
BclI TGATCA 4 cut(s) 598, 1224, 1596, 1609
BcoDI GTCTC 2 cut(s) 397, 1153
BcuI ACTAGT 1 cut(s) 1057
BfaI CTAG 5 cut(s) 518, 1058, 1085, 1256, 1382
BfmI CTRYAG 4 cut(s) 807, 833, 1493, 1704
BfuAI ACCTGC 1 cut(s) 826
Bme1390I CCNGG 1 cut(s) 439
Bme18I GGWCC 1 cut(s) 922
BmgT120I GGNCC 1 cut(s) 922
BmiI GGNNCC 1 cut(s) 754
BmrFI CCNGG 1 cut(s) 439
BmrI ACTGGG 1 cut(s) 904
BmsI GCATC 2 cut(s) 349, 1173
BmtI GCTAGC 1 cut(s) 1088
BmuI ACTGGG 1 cut(s) 904
BpiI GAAGAC 2 cut(s) 282, 808
BpmI CTGGAG 2 cut(s) 567, 1292
BpuEI CTTGAG 2 cut(s) 81, 266
BsaAI YACGTR 1 cut(s) 697
BsaBI GATNNNNATC 1 cut(s) 597
BsaI GGTCTC 1 cut(s) 397
BsaJI CCNNGG 4 cut(s) 925, 1016, 1362, 1555
BsaWI WCCGGW 1 cut(s) 1519
BsaXI ACNNNNNCTCC 2 cut(s) 518, 548
Bsc4I CCNNNNNNNGG 4 cut(s) 341, 438, 505, 1519
Bse1I ACTGG 5 cut(s) 240, 550, 910, 1285, 1688
Bse21I CCTNAGG 1 cut(s) 455
Bse3DI GCAATG 1 cut(s) 852
Bse8I GATNNNNATC 1 cut(s) 597
BseAI TCCGGA 1 cut(s) 1519
BseBI CCWGG 1 cut(s) 439
BseDI CCNNGG 4 cut(s) 925, 1016, 1362, 1555
BseGI GGATG 3 cut(s) 395, 472, 1302
BseJI GATNNNNATC 1 cut(s) 597
BseLI CCNNNNNNNGG 4 cut(s) 341, 438, 505, 1519
BseMI GCAATG 1 cut(s) 852
BseMII CTCAG 3 cut(s) 209, 993, 1597
BseNI ACTGG 5 cut(s) 240, 550, 910, 1285, 1688
BseRI GAGGAG 2 cut(s) 1061, 1546
BseYI CCCAGC 1 cut(s) 163
BsgI GTGCAG 2 cut(s) 309, 1781
BshFI GGCC 5 cut(s) 460, 552, 784, 851, 1604
BshNI GGYRCC 1 cut(s) 752
BsiSI CCGG 1 cut(s) 1520
BslFI GGGAC 1 cut(s) 1244
BslI CCNNNNNNNGG 4 cut(s) 341, 438, 505, 1519
BsmAI GTCTC 2 cut(s) 397, 1153
BsmFI GGGAC 1 cut(s) 1244
BsmI GAATGC 1 cut(s) 1332
BsnI GGCC 5 cut(s) 460, 552, 784, 851, 1604
Bso31I GGTCTC 1 cut(s) 397
Bsp13I TCCGGA 1 cut(s) 1519
Bsp1407I TGTACA 1 cut(s) 127
Bsp143I GATC 8 cut(s) 153, 531, 598, 883, 1182, 1224, 1596, 1609
BspACI CCGC 3 cut(s) 793, 848, 1809
BspANI GGCC 5 cut(s) 460, 552, 784, 851, 1604
BspCNI CTCAG 3 cut(s) 210, 994, 1596
BspEI TCCGGA 1 cut(s) 1519
BspHI TCATGA 1 cut(s) 271
BspLI GGNNCC 1 cut(s) 754
BspMAI CTGCAG 2 cut(s) 837, 1708
BspMI ACCTGC 1 cut(s) 826
BspOI GCTAGC 1 cut(s) 1088
BspPI GGATC 3 cut(s) 148, 878, 1177
BspQI GCTCTTC 1 cut(s) 1337
BspT107I GGYRCC 1 cut(s) 752
BspTNI GGTCTC 1 cut(s) 397
BsrDI GCAATG 1 cut(s) 852
BsrGI TGTACA 1 cut(s) 127
BsrI ACTGG 5 cut(s) 240, 550, 910, 1285, 1688
BssECI CCNNGG 4 cut(s) 925, 1016, 1362, 1555
BssMI GATC 8 cut(s) 153, 531, 598, 883, 1182, 1224, 1596, 1609
BssT1I CCWWGG 3 cut(s) 1016, 1362, 1555
Bst2UI CCWGG 1 cut(s) 439
Bst4CI ACNGT 5 cut(s) 26, 385, 685, 1033, 1175
Bst6I CTCTTC 3 cut(s) 854, 1337, 1791
BstAUI TGTACA 1 cut(s) 127
BstBAI YACGTR 1 cut(s) 697
BstC8I GCNNGC 1 cut(s) 1086
BstDEI CTNAG 4 cut(s) 218, 455, 1002, 1583
BstDSI CCRYGG 1 cut(s) 925
BstF5I GGATG 3 cut(s) 395, 472, 1302
BstKTI GATC 8 cut(s) 156, 534, 601, 886, 1185, 1227, 1599, 1612
BstMAI GTCTC 2 cut(s) 397, 1153
BstMBI GATC 8 cut(s) 153, 531, 598, 883, 1182, 1224, 1596, 1609
BstMWI GCNNNNNNNGC 2 cut(s) 854, 1700
BstNI CCWGG 1 cut(s) 439
BstSCI CCNGG 1 cut(s) 437
BstSFI CTRYAG 4 cut(s) 807, 833, 1493, 1704
BstSNI TACGTA 1 cut(s) 697
BstV2I GAAGAC 2 cut(s) 282, 808
BstX2I RGATCY 1 cut(s) 1182
BstYI RGATCY 1 cut(s) 1182
Bsu36I CCTNAGG 1 cut(s) 455
BsuRI GGCC 5 cut(s) 460, 552, 784, 851, 1604
BtgI CCRYGG 1 cut(s) 925
BtgZI GCGATG 1 cut(s) 1150
BtsCI GGATG 3 cut(s) 395, 472, 1302
BtsIMutI CAGTG 3 cut(s) 171, 214, 603
BveI ACCTGC 1 cut(s) 826
Cac8I GCNNGC 1 cut(s) 1086
CciI TCATGA 1 cut(s) 271
Cfr13I GGNCC 1 cut(s) 922
Csp6I GTAC 4 cut(s) 128, 446, 698, 753
CviQI GTAC 4 cut(s) 128, 446, 698, 753
DdeI CTNAG 4 cut(s) 218, 455, 1002, 1583
DpnI GATC 8 cut(s) 155, 533, 600, 885, 1184, 1226, 1598, 1611
DpnII GATC 8 cut(s) 153, 531, 598, 883, 1182, 1224, 1596, 1609
DraI TTTAAA 1 cut(s) 1407
EaeI YGGCCR 2 cut(s) 849, 1602
Eam1104I CTCTTC 3 cut(s) 854, 1337, 1791
EarI CTCTTC 3 cut(s) 854, 1337, 1791
Eco105I TACGTA 1 cut(s) 697
Eco130I CCWWGG 3 cut(s) 1016, 1362, 1555
Eco147I AGGCCT 1 cut(s) 460
Eco31I GGTCTC 1 cut(s) 397
Eco47I GGWCC 1 cut(s) 922
Eco57I CTGAAG 1 cut(s) 627
Eco81I CCTNAGG 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 437
EcoT14I CCWWGG 3 cut(s) 1016, 1362, 1555
ErhI CCWWGG 3 cut(s) 1016, 1362, 1555
FaqI GGGAC 1 cut(s) 1244
FbaI TGATCA 4 cut(s) 598, 1224, 1596, 1609
FblI GTMKAC 5 cut(s) 54, 145, 693, 1492, 1779
FokI GGATG 3 cut(s) 382, 459, 1289
FspBI CTAG 5 cut(s) 518, 1058, 1085, 1256, 1382
GsaI CCCAGC 1 cut(s) 167
GsuI CTGGAG 2 cut(s) 567, 1292
HaeIII GGCC 5 cut(s) 460, 552, 784, 851, 1604
HapII CCGG 1 cut(s) 1520
HincII GTYRAC 2 cut(s) 304, 1780
HindII GTYRAC 2 cut(s) 304, 1780
HinfI GANTC 6 cut(s) 331, 421, 1021, 1296, 1314, 1523
HpaII CCGG 1 cut(s) 1520
HphI GGTGA 2 cut(s) 691, 1805
Hpy166II GTNNAC 8 cut(s) 55, 146, 304, 694, 1415, 1479, 1493, 1780
Hpy188I TCNGA 4 cut(s) 883, 916, 1220, 1319
Hpy188III TCNNGA 9 cut(s) 98, 272, 283, 482, 965, 1180, 1309, 1520, 1594
Hpy8I GTNNAC 8 cut(s) 55, 146, 304, 694, 1415, 1479, 1493, 1780
HpyAV CCTTC 5 cut(s) 419, 888, 913, 1759, 1784
HpyCH4III ACNGT 5 cut(s) 26, 385, 685, 1033, 1175
HpyCH4IV ACGT 3 cut(s) 696, 1127, 1238
HpyCH4V TGCA 5 cut(s) 290, 835, 1028, 1706, 1762
HpyF10VI GCNNNNNNNGC 2 cut(s) 854, 1700
HpyF3I CTNAG 4 cut(s) 218, 455, 1002, 1583
HpySE526I ACGT 3 cut(s) 696, 1127, 1238
Kpn2I TCCGGA 1 cut(s) 1519
KpnI GGTACC 1 cut(s) 756
Ksp22I TGATCA 4 cut(s) 598, 1224, 1596, 1609
Kzo9I GATC 8 cut(s) 153, 531, 598, 883, 1182, 1224, 1596, 1609
LguI GCTCTTC 1 cut(s) 1337
LmnI GCTCC 3 cut(s) 578, 1533, 1568
LweI GCATC 2 cut(s) 349, 1173
MaeI CTAG 5 cut(s) 518, 1058, 1085, 1256, 1382
MaeII ACGT 3 cut(s) 696, 1127, 1238
MaeIII GTNAC 7 cut(s) 221, 319, 464, 679, 1033, 1234, 1742
MalI GATC 8 cut(s) 155, 533, 600, 885, 1184, 1226, 1598, 1611
MboI GATC 8 cut(s) 153, 531, 598, 883, 1182, 1224, 1596, 1609
MfeI CAATTG 3 cut(s) 198, 637, 893
MflI RGATCY 1 cut(s) 1182
MlyI GAGTC 2 cut(s) 1015, 1517
MmeI TCCRAC 1 cut(s) 894
MroI TCCGGA 1 cut(s) 1519
MseI TTAA 6 cut(s) 62, 105, 113, 245, 1337, 1406
MslI CAYNNNNRTG 4 cut(s) 475, 527, 1220, 1427
MspA1I CMGCKG 2 cut(s) 1001, 1358
MspI CCGG 1 cut(s) 1520
MspR9I CCNGG 1 cut(s) 439
MunI CAATTG 3 cut(s) 198, 637, 893
Mva1269I GAATGC 1 cut(s) 1332
MvaI CCWGG 1 cut(s) 439
MwoI GCNNNNNNNGC 2 cut(s) 854, 1700
NdeII GATC 8 cut(s) 153, 531, 598, 883, 1182, 1224, 1596, 1609
NheI GCTAGC 1 cut(s) 1084
NlaIV GGNNCC 1 cut(s) 754
NmeAIII GCCGAG 1 cut(s) 1717
NmuCI GTSAC 3 cut(s) 464, 679, 1234
PagI TCATGA 1 cut(s) 271
PceI AGGCCT 1 cut(s) 460
PciSI GCTCTTC 1 cut(s) 1337
PctI GAATGC 1 cut(s) 1332
PfeI GAWTC 4 cut(s) 331, 421, 1296, 1314
PflMI CCANNNNNTGG 3 cut(s) 341, 438, 505
PleI GAGTC 2 cut(s) 1015, 1517
PpsI GAGTC 2 cut(s) 1015, 1517
Ppu21I YACGTR 1 cut(s) 697
PshBI ATTAAT 2 cut(s) 105, 113
Psp6I CCWGG 1 cut(s) 437
PspFI CCCAGC 1 cut(s) 163
PspGI CCWGG 1 cut(s) 437
PspN4I GGNNCC 1 cut(s) 754
PspPI GGNCC 1 cut(s) 922
PstI CTGCAG 2 cut(s) 837, 1708
PsuI RGATCY 1 cut(s) 1182
PvuII CAGCTG 2 cut(s) 1001, 1358
RsaI GTAC 4 cut(s) 129, 447, 699, 754
RsaNI GTAC 4 cut(s) 128, 446, 698, 753
RseI CAYNNNNRTG 4 cut(s) 475, 527, 1220, 1427
SalI GTCGAC 1 cut(s) 1778
SapI GCTCTTC 1 cut(s) 1337
SaqAI TTAA 6 cut(s) 62, 105, 113, 245, 1337, 1406
Sau3AI GATC 8 cut(s) 153, 531, 598, 883, 1182, 1224, 1596, 1609
Sau96I GGNCC 1 cut(s) 922
SchI GAGTC 2 cut(s) 1015, 1517
ScrFI CCNGG 1 cut(s) 439
SfaNI GCATC 2 cut(s) 349, 1173
SfcI CTRYAG 4 cut(s) 807, 833, 1493, 1704
SinI GGWCC 1 cut(s) 922
SmiMI CAYNNNNRTG 4 cut(s) 475, 527, 1220, 1427
SmlI CTYRAG 2 cut(s) 96, 281
SmoI CTYRAG 2 cut(s) 96, 281
SnaBI TACGTA 1 cut(s) 697
SpeI ACTAGT 1 cut(s) 1057
SseBI AGGCCT 1 cut(s) 460
SsiI CCGC 3 cut(s) 793, 848, 1809
SspMI CTAG 5 cut(s) 518, 1058, 1085, 1256, 1382
StuI AGGCCT 1 cut(s) 460
StyD4I CCNGG 1 cut(s) 437
StyI CCWWGG 3 cut(s) 1016, 1362, 1555
TaaI ACNGT 5 cut(s) 26, 385, 685, 1033, 1175
TaiI ACGT 3 cut(s) 699, 1130, 1241
TaqI TCGA 4 cut(s) 799, 1044, 1179, 1779
TatI WGTACW 1 cut(s) 127
TauI GCSGC 1 cut(s) 851
TfiI GAWTC 4 cut(s) 331, 421, 1296, 1314
Tru1I TTAA 6 cut(s) 62, 105, 113, 245, 1337, 1406
Tru9I TTAA 6 cut(s) 62, 105, 113, 245, 1337, 1406
TscAI CASTG 3 cut(s) 178, 214, 610
TseFI GTSAC 3 cut(s) 464, 679, 1234
Tsp45I GTSAC 3 cut(s) 464, 679, 1234
TspGWI ACGGA 2 cut(s) 914, 1222
TspRI CASTG 3 cut(s) 178, 214, 610
Van91I CCANNNNNTGG 3 cut(s) 341, 438, 505
VpaK11BI GGWCC 1 cut(s) 922
VspI ATTAAT 2 cut(s) 105, 113
XapI RAATTY 5 cut(s) 903, 959, 994, 1576, 1711
XcmI CCANNNNNNNNNTGG 1 cut(s) 1534
XmiI GTMKAC 5 cut(s) 54, 145, 693, 1492, 1779
XspI CTAG 5 cut(s) 518, 1058, 1085, 1256, 1382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.