RLG00000027192

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0003626
Physical Location & Seq
Forward (+)
9433110 .. 9436140
3031 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027192

Sequence Viewer

Length: 1623 bp
ATGGAGCTGCAAGAAGTAGAAAACAGATTAAAAGGAGCAGGAGGAGAAACAAAAAGGGAGGAAGAGAATTTGGTTCATGATTCATCTATAGATTACAAAGGAACAGTTCCTCTACGTGCTTCAACAGGCGTTTGGAAAGCTTCTCTGTTCATCATCACTATTGAATTTAGTGAGAGGCTGAGTTACTTTGGAATAGCAACAAATCTCATCACATACCTCACCCAAGTGCTTCATCAAGACATCAAAACTGCAGTGAAAAATGTGAACTATTGGACAGGAGTGACGACAATCATGCCTTTAATCGGAGGGTTCTTAGCAGATGCCTACACTGGTCGATTCAACATGGTTATGTATTCATCCCTCATATATCTAATGGGTCTGAGTCTCTTGACAATGTCGCAATTCATTCCAAGTCTAAAGCCTTGCAACACGAAGATATGTCGACAGCCTAGAAAGCTTCATGAAGTGTTACTTTTTGTTGCCTTGTACTTCATCTCTGTTGGAACCGGAGGTCACAAGCCATGTCTTCAAAGCTTTGGTGCTGACCAATTCGACGATGATCACTTGGAAGAAAGAAAGAAGAAAATGTCCTTCTTCAACTGGTGGAACTTTGCACTTTGTTGTGGGCTGTTTCTTGGTGTAACTGTGATTGTTTACGTTCAGGACTCAGTGAGCTGGGGCGTAGCAGATCTTGTTCTCACAATCACCCTGGCTATTGGAATAGTGACGTTTTATATGGGGAAGTATTGTTACCGTTATAAAGTAGCACAAGGAAGCCCTTTGAGTCCCATGTTACAGGTCTTGGTTGCAGCCATTAGAAAAAGAAATTTGGCCAATCCTCAAAACCCTGATCTGCTATTTGAAGTTCGCAGGTCAGAGAAGTACTCCCAAGGAAGGCTTCTACTTCACACAAATAGGCTCAGGTTTCTAGACAAGGCCGCAATAATTGAAGAGAATGAGAACTACCCATCTTGTGAACAGAAGCACAACCCTTGGAGATTGGCTACATTGACAAGAGTGGAGGAGTTGAAACTCATCTTGAGCATGATCCCCATTTGGCTCACCTCATTAACAAATACAGTGTGTTTGGCACAAGCCCCGACCTTCTTTGTTAAACAAGCTGCTACAATGAACCGAAATATTACTAACAACTTCAAGATCCCACCAGCCACCATTTTCTCTCTTGGAGCCATTGCAATGCTAATCTCAGTCACCACCGGAAATGAAAGGGGTATGAACATCCTCCTTAGGATCGGATTTGGGATGATACTTACGGTGATAGCAATGTCCGTGGCAGCACTTGTTGAACGAAAAAGGCTAAGATATGCTGATCCACAAGCTATAACTGTGTTCTGGTTAGCACCCCAGTACATAATTCTTGGTATAGGGGATGCATTTGCTCTGGTTGATCATGTTACAGAGAAGGATGGGAGGAGTTGGTTTGGGAAGGACTTGAGTGGAAGCCGCTTGGACAATTTCTTCTGGCTTTTGGCAGCCATGAATGGGTTGAATTCATGTGTTTATGGGTATTTGGCTAGGGGTTATACCTACAAGAATGTGGAGAGGAGAGTAGTTTTGGGTGATAATTCTGTGACTAATGGAAATGATCAATCCATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

541

Amino Acids

60.79

Weight (kDa)

9.08

Isoelectric Point (pI)

35.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 113 - 473 7.4e-69 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 759
Acc36I ACCTGC 1 cut(s) 861
AccI GTMKAC 1 cut(s) 442
AciI CCGC 2 cut(s) 939, 1465
AclWI GGATC 4 cut(s) 1042, 1153, 1259, 1325
AcoI YGGCCR 1 cut(s) 831
AcsI RAATTY 4 cut(s) 67, 164, 826, 1510
AfaI GTAC 3 cut(s) 488, 884, 1370
AfiI CCNNNNNNNGG 3 cut(s) 302, 894, 1503
AjnI CCWGG 1 cut(s) 708
AjuI GAANNNNNNNTTGG 2 cut(s) 882, 914
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 7 cut(s) 7, 140, 457, 534, 675, 1121, 1340
AluI AGCT 7 cut(s) 7, 140, 457, 534, 675, 1121, 1340
Alw26I GTCTC 1 cut(s) 389
AlwI GGATC 4 cut(s) 1042, 1153, 1259, 1325
AoxI GGCC 2 cut(s) 831, 936
ApeKI GCWGC 5 cut(s) 7, 809, 1121, 1295, 1493
ApoI RAATTY 4 cut(s) 67, 164, 826, 1510
AsuHPI GGTGA 6 cut(s) 211, 697, 1054, 1204, 1288, 1592
AxyI CCTNAGG 1 cut(s) 1247
BalI TGGCCA 1 cut(s) 833
BarI GAAGNNNNNNTAC 2 cut(s) 734, 766
BbsI GAAGAC 1 cut(s) 518
BbvI GCAGC 4 cut(s) 821, 1108, 1307, 1505
BccI CCATC 2 cut(s) 976, 1421
BcgI CGANNNNNNTGC 2 cut(s) 274, 308
BciT130I CCWGG 1 cut(s) 710
BclI TGATCA 3 cut(s) 559, 1408, 1606
BcoDI GTCTC 1 cut(s) 389
BfaI CTAG 3 cut(s) 450, 929, 1536
BfmI CTRYAG 2 cut(s) 87, 249
BfuAI ACCTGC 1 cut(s) 861
BglII AGATCT 1 cut(s) 688
BisI GCNGC 7 cut(s) 8, 810, 939, 1122, 1296, 1465, 1494
BlsI GCNGC 7 cut(s) 9, 811, 940, 1123, 1297, 1466, 1495
BmcAI AGTACT 1 cut(s) 884
Bme1390I CCNGG 1 cut(s) 710
BmiI GGNNCC 2 cut(s) 505, 1189
BmrFI CCNGG 1 cut(s) 710
BmrI ACTGGG 1 cut(s) 1360
BmsI GCATC 2 cut(s) 310, 1381
BmuI ACTGGG 1 cut(s) 1360
BpiI GAAGAC 1 cut(s) 518
BplI GAGNNNNNCTC 2 cut(s) 869, 901
Bpu10I CCTNAGC 1 cut(s) 920
BpuEI CTTGAG 2 cut(s) 1060, 1474
BsaAI YACGTR 1 cut(s) 116
BsaJI CCNNGG 4 cut(s) 708, 889, 992, 1290
BsaWI WCCGGW 2 cut(s) 506, 1217
Bsc4I CCNNNNNNNGG 3 cut(s) 302, 894, 1503
Bse1I ACTGG 3 cut(s) 334, 605, 1366
Bse21I CCTNAGG 1 cut(s) 1247
Bse3DI GCAATG 4 cut(s) 1191, 1203, 1290, 1614
BseBI CCWGG 1 cut(s) 710
BseDI CCNNGG 4 cut(s) 708, 889, 992, 1290
BseGI GGATG 5 cut(s) 356, 1239, 1269, 1396, 1432
BseLI CCNNNNNNNGG 3 cut(s) 302, 894, 1503
BseMI GCAATG 4 cut(s) 1191, 1203, 1290, 1614
BseMII CTCAG 5 cut(s) 170, 371, 681, 934, 1221
BseNI ACTGG 3 cut(s) 334, 605, 1366
BseRI GAGGAG 4 cut(s) 57, 1037, 1447, 1579
BseXI GCAGC 4 cut(s) 821, 1108, 1307, 1505
BseYI CCCAGC 1 cut(s) 675
BshFI GGCC 2 cut(s) 833, 938
BsiSI CCGG 2 cut(s) 507, 1218
BslFI GGGAC 1 cut(s) 771
BslI CCNNNNNNNGG 3 cut(s) 302, 894, 1503
BsmAI GTCTC 1 cut(s) 389
BsmFI GGGAC 1 cut(s) 771
BsnI GGCC 2 cut(s) 833, 938
Bsp143I GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1251, 1330, 1408, 1606
BspACI CCGC 2 cut(s) 939, 1465
BspANI GGCC 2 cut(s) 833, 938
BspCNI CTCAG 5 cut(s) 171, 372, 680, 933, 1220
BspHI TCATGA 2 cut(s) 76, 460
BspLI GGNNCC 2 cut(s) 505, 1189
BspMAI CTGCAG 1 cut(s) 253
BspMI ACCTGC 1 cut(s) 861
BspPI GGATC 4 cut(s) 1042, 1153, 1259, 1325
BsrDI GCAATG 4 cut(s) 1191, 1203, 1290, 1614
BsrI ACTGG 3 cut(s) 334, 605, 1366
BssECI CCNNGG 4 cut(s) 708, 889, 992, 1290
BssMI GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1251, 1330, 1408, 1606
BssT1I CCWWGG 2 cut(s) 889, 992
Bst2UI CCWGG 1 cut(s) 710
Bst4CI ACNGT 6 cut(s) 106, 646, 755, 1081, 1276, 1348
Bst6I CTCTTC 2 cut(s) 57, 945
BstBAI YACGTR 1 cut(s) 116
BstDEI CTNAG 8 cut(s) 179, 313, 380, 667, 920, 1207, 1247, 1319
BstDSI CCRYGG 1 cut(s) 1290
BstF5I GGATG 5 cut(s) 356, 1239, 1269, 1396, 1432
BstKTI GATC 9 cut(s) 562, 691, 853, 1050, 1161, 1254, 1333, 1411, 1609
BstMAI GTCTC 1 cut(s) 389
BstMBI GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1251, 1330, 1408, 1606
BstMWI GCNNNNNNNGC 1 cut(s) 454
BstNI CCWGG 1 cut(s) 710
BstSCI CCNGG 1 cut(s) 708
BstSFI CTRYAG 2 cut(s) 87, 249
BstV1I GCAGC 4 cut(s) 821, 1108, 1307, 1505
BstV2I GAAGAC 1 cut(s) 518
BstX2I RGATCY 2 cut(s) 688, 1158
BstYI RGATCY 2 cut(s) 688, 1158
Bsu36I CCTNAGG 1 cut(s) 1247
BsuRI GGCC 2 cut(s) 833, 938
BtgI CCRYGG 1 cut(s) 1290
BtsCI GGATG 5 cut(s) 356, 1239, 1269, 1396, 1432
BtsI GCAGTG 1 cut(s) 258
BtsIMutI CAGTG 4 cut(s) 258, 327, 675, 1086
BveI ACCTGC 1 cut(s) 861
CciI TCATGA 2 cut(s) 76, 460
Csp6I GTAC 3 cut(s) 487, 883, 1369
CspCI CAANNNNNGTGG 2 cut(s) 1272, 1307
CviQI GTAC 3 cut(s) 487, 883, 1369
DdeI CTNAG 8 cut(s) 179, 313, 380, 667, 920, 1207, 1247, 1319
DpnI GATC 9 cut(s) 561, 690, 852, 1049, 1160, 1253, 1332, 1410, 1608
DpnII GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1251, 1330, 1408, 1606
EaeI YGGCCR 1 cut(s) 831
Eam1104I CTCTTC 2 cut(s) 57, 945
EarI CTCTTC 2 cut(s) 57, 945
Eco130I CCWWGG 2 cut(s) 889, 992
Eco81I CCTNAGG 1 cut(s) 1247
EcoRI GAATTC 1 cut(s) 1510
EcoRII CCWGG 1 cut(s) 708
EcoT14I CCWWGG 2 cut(s) 889, 992
EcoT22I ATGCAT 1 cut(s) 1396
ErhI CCWWGG 2 cut(s) 889, 992
FalI AAGNNNNNCTT 4 cut(s) 456, 488, 882, 914
FaqI GGGAC 1 cut(s) 771
FbaI TGATCA 3 cut(s) 559, 1408, 1606
FblI GTMKAC 1 cut(s) 442
Fnu4HI GCNGC 7 cut(s) 8, 810, 939, 1122, 1296, 1465, 1494
FokI GGATG 5 cut(s) 343, 1226, 1276, 1403, 1439
Fsp4HI GCNGC 7 cut(s) 8, 810, 939, 1122, 1296, 1465, 1494
FspBI CTAG 3 cut(s) 450, 929, 1536
GluI GCNGC 7 cut(s) 8, 810, 939, 1122, 1296, 1465, 1494
GsaI CCCAGC 1 cut(s) 679
HaeIII GGCC 2 cut(s) 833, 938
HapII CCGG 2 cut(s) 507, 1218
HincII GTYRAC 1 cut(s) 443
HindII GTYRAC 1 cut(s) 443
HindIII AAGCTT 3 cut(s) 138, 455, 532
HinfI GANTC 5 cut(s) 80, 336, 382, 665, 784
HpaII CCGG 2 cut(s) 507, 1218
HphI GGTGA 6 cut(s) 211, 697, 1054, 1204, 1288, 1592
Hpy166II GTNNAC 4 cut(s) 265, 443, 655, 977
Hpy188I TCNGA 4 cut(s) 305, 381, 877, 1256
Hpy188III TCNNGA 8 cut(s) 77, 236, 388, 461, 662, 929, 1039, 1156
Hpy8I GTNNAC 4 cut(s) 265, 443, 655, 977
Hpy99I CGWCG 1 cut(s) 557
HpyAV CCTTC 5 cut(s) 601, 888, 1114, 1417, 1441
HpyCH4III ACNGT 6 cut(s) 106, 646, 755, 1081, 1276, 1348
HpyCH4IV ACGT 3 cut(s) 115, 657, 728
HpyCH4V TGCA 7 cut(s) 10, 251, 426, 614, 809, 1196, 1394
HpyF10VI GCNNNNNNNGC 1 cut(s) 454
HpyF3I CTNAG 8 cut(s) 179, 313, 380, 667, 920, 1207, 1247, 1319
HpySE526I ACGT 3 cut(s) 115, 657, 728
Ksp22I TGATCA 3 cut(s) 559, 1408, 1606
Kzo9I GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1251, 1330, 1408, 1606
LmnI GCTCC 3 cut(s) 4, 35, 1187
Lsp1109I GCAGC 4 cut(s) 821, 1108, 1307, 1505
LweI GCATC 2 cut(s) 310, 1381
MaeI CTAG 3 cut(s) 450, 929, 1536
MaeII ACGT 3 cut(s) 115, 657, 728
MalI GATC 9 cut(s) 561, 690, 852, 1049, 1160, 1253, 1332, 1410, 1608
MboI GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1251, 1330, 1408, 1606
MboII GAAGA 8 cut(s) 74, 445, 518, 581, 586, 592, 962, 1471
MflI RGATCY 2 cut(s) 688, 1158
MlsI TGGCCA 1 cut(s) 833
MluNI TGGCCA 1 cut(s) 833
MlyI GAGTC 3 cut(s) 391, 659, 793
MmeI TCCRAC 1 cut(s) 481
Mox20I TGGCCA 1 cut(s) 833
Mph1103I ATGCAT 1 cut(s) 1396
MscI TGGCCA 1 cut(s) 833
MseI TTAA 5 cut(s) 29, 299, 1070, 1113, 1621
MslI CAYNNNNRTG 3 cut(s) 224, 347, 1196
Msp20I TGGCCA 1 cut(s) 833
MspI CCGG 2 cut(s) 507, 1218
MspR9I CCNGG 1 cut(s) 710
MvaI CCWGG 1 cut(s) 710
MwoI GCNNNNNNNGC 1 cut(s) 454
NdeII GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1251, 1330, 1408, 1606
NlaIV GGNNCC 2 cut(s) 505, 1189
NmuCI GTSAC 5 cut(s) 280, 512, 724, 1210, 1591
NsiI ATGCAT 1 cut(s) 1396
OliI CACNNNNGTG 1 cut(s) 224
PagI TCATGA 2 cut(s) 76, 460
PfeI GAWTC 2 cut(s) 80, 336
PflFI GACNNNGTC 1 cut(s) 394
PkrI GCNGC 7 cut(s) 9, 811, 940, 1123, 1297, 1466, 1495
PleI GAGTC 3 cut(s) 390, 659, 792
PpsI GAGTC 3 cut(s) 390, 659, 792
Ppu21I YACGTR 1 cut(s) 116
PsiI TTATAA 1 cut(s) 759
Psp6I CCWGG 1 cut(s) 708
PspFI CCCAGC 1 cut(s) 675
PspGI CCWGG 1 cut(s) 708
PspN4I GGNNCC 2 cut(s) 505, 1189
PstI CTGCAG 1 cut(s) 253
PsuI RGATCY 2 cut(s) 688, 1158
PsyI GACNNNGTC 1 cut(s) 394
RsaI GTAC 3 cut(s) 488, 884, 1370
RsaNI GTAC 3 cut(s) 487, 883, 1369
RseI CAYNNNNRTG 3 cut(s) 224, 347, 1196
SalI GTCGAC 1 cut(s) 441
SaqAI TTAA 5 cut(s) 29, 299, 1070, 1113, 1621
SatI GCNGC 7 cut(s) 8, 810, 939, 1122, 1296, 1465, 1494
Sau3AI GATC 9 cut(s) 559, 688, 850, 1047, 1158, 1251, 1330, 1408, 1606
ScaI AGTACT 1 cut(s) 884
SchI GAGTC 3 cut(s) 391, 659, 793
ScrFI CCNGG 1 cut(s) 710
SfaNI GCATC 2 cut(s) 310, 1381
SfcI CTRYAG 2 cut(s) 87, 249
SmiMI CAYNNNNRTG 3 cut(s) 224, 347, 1196
SmlI CTYRAG 2 cut(s) 1039, 1453
SmoI CTYRAG 2 cut(s) 1039, 1453
SsiI CCGC 2 cut(s) 939, 1465
SspI AATATT 1 cut(s) 1141
SspMI CTAG 3 cut(s) 450, 929, 1536
StyD4I CCNGG 1 cut(s) 708
StyI CCWWGG 2 cut(s) 889, 992
TaaI ACNGT 6 cut(s) 106, 646, 755, 1081, 1276, 1348
TaiI ACGT 3 cut(s) 118, 660, 731
TaqI TCGA 3 cut(s) 334, 442, 552
TatI WGTACW 3 cut(s) 486, 882, 1368
TauI GCSGC 2 cut(s) 941, 1467
TfiI GAWTC 2 cut(s) 80, 336
Tru1I TTAA 5 cut(s) 29, 299, 1070, 1113, 1621
Tru9I TTAA 5 cut(s) 29, 299, 1070, 1113, 1621
TscAI CASTG 4 cut(s) 258, 334, 675, 1086
TseFI GTSAC 5 cut(s) 280, 512, 724, 1210, 1591
TseI GCWGC 5 cut(s) 7, 809, 1121, 1295, 1493
Tsp45I GTSAC 5 cut(s) 280, 512, 724, 1210, 1591
TspGWI ACGGA 1 cut(s) 1279
TspRI CASTG 4 cut(s) 258, 334, 675, 1086
Tth111I GACNNNGTC 1 cut(s) 394
XapI RAATTY 4 cut(s) 67, 164, 826, 1510
XbaI TCTAGA 1 cut(s) 928
XmiI GTMKAC 1 cut(s) 442
XspI CTAG 3 cut(s) 450, 929, 1536
ZrmI AGTACT 1 cut(s) 884
Zsp2I ATGCAT 1 cut(s) 1396
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.