Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003626

Physical Location & Seq

Genomic Coordinates Reverse (-)

21579226 .. 21583098

Gene Structure 3873 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1794 bp

ATGGAGCAAGAAATGGAAAAGAGAAAACGAGCTAGTAGTACTGCATCATCAGAAGCAAATACTATTAGGGATGAAGATAACTGGGTTCATGATTCATCTGTAGATCATAAAGGAAGAGTTCCTCTACGCGCTTCAACCGGCGTTTGGAAAGCTTCTCTCTTCATCATGACTATTGAATTTAGTGAGAGGTTAAGTTACTTTGGAATAGCTACAAATCTCATCACCTACCTCACTCAATTGCTTCACCAAGACATCAAAACAGCAGCCAAAAATGTGAACTTCTGGGCAGGAGTGACAACTATAATGCCTTTAATTGGAGGATTTTTAGCAGATGCCTACGCTGGCCGATTCAGCATGGTTCTGTTTTCATCCCTCATATATCTAATGGGCCTAAGTATCCTGACAATGTCCCAGTTTATCCCAAGTCTAAAACCCTGCAGTACAAAGATGTGCCAACAGCCTCGAAAACTTCATGAAGTGGTGCTTTTCATTGCCTTGTACTTCATCTCAGTTGGAACTGGAGGGCACAAGCCATGTCTTCAAAGCTTTGGAGCAGATCAATTTGACGACGATCACACGGAAGAACGAAAGAAAAAAATGTCCTACTTCAATTGGTGGAACTTTGCACTTTGTTGTGGATTGTTTCTTGGTGTGACTGCAATTGTCTATGTTCAAGACTATGTGAGTTGGGGTGTGGCTGATCTTGTGCTAACAATCACCATGGCTTTTACAATTGTGACCTTCTATATGGGGAAGGCTCTTTATAGGTATAGAATCCCAGAAGGAAGCCCTTTGGTCCCCATGTTACAGGTTTTGGTTGCAGCTATAAGAAAAAGAAAATTACCCAATCCTTCAAACCCCGCTTTGCTATTTGAAGTTCCCGAGTCCCATAAGCAATCCCAAGGAAGGCTTCTACTTCATACAAATAGGCTTAGGTTTCTAGACAAGGCAGCAATCATCGAAGAGAACGAGAACACATCTTGGGACCAGAAACACAATCCTTGGAGATTGACAACACTGACAAGGGTGGAAGAGGTGAAGCTTATTTTAAACATGATCCCCATATGGCTAACCTCTTTAACATTTGGACTATGTGTAGCACAAGCCTCAACATTCTTTGTCAAACAAGCTGCAATAATGGACCTGCATATCACTGACAACTTCAAAATCCCACCAGCCTCAATCTATTCTCTAGGGGCCATTGCAATGCTTATCTCCGTCACAGTCTATGACAAGATTCTTGTTCCGATTCTAAGGAAAGCGACCGGCAACGAAAGGGGGATTAACATTCTCACAAGGATTGGAATTGGCATGATTTTTTCAGTTGTAGCAATGTCAGCTGCAGCATTAGTTGAAACAAAAAGACTAAAAGCTGATCGGCCGCAATCTATGAGTGTGTTCTGGTTGGCTCCCCAGTACATAATTCTTGGGTTTGGAGATGGATTCACTCTGGTAGGGTTACAAGAGTATTTCTACGACCAAGTTCCTGACTCAATGAGAAGCTTGGGGATTGCTTTTTATCTGAGTGTGATTGCAGTTGGGAGCTTCATAAGCAGCTTTCTGATTATTGTTGTGGATCATGTCACAGGAAAGGGTGGGAATAGCTGGTTTGGGAAGGACTTGAACTCAAGCCGTTTGGATAATTTCTACTGGCTTTTGGCAGCCATGAATGGTTTGAATTTGTGTGTTTACGGGTTGTTGGCTAGGGGTTATACTTACAAAAATGTGGAGAGAAGGGTGGTTGTGGCTGACGATACTTCTCTCAGTAATGGAATTGATCAATCTATGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

598

Amino Acids

66.92

Weight (kDa)

8.92

Isoelectric Point (pI)

38.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	118 - 531	3.3e-85	POT family
MFS_1	PF07690	196 - 518	3.4e-10	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37900 AT2G37900 AT3G53960
fragaria_vesca	FvH4_6g12770 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570
malus_domestica	MD01G1141500.v1.1 MD04G1138500.v1.1 MD07G1205700.v1.1 MD12G1153900.v1.1 MD12G1154200.v1.1
prunus_persica	Prupe.2G241800_v2.0.a1 Prupe.6G264100_v2.0.a1
pyrus_communis	pycom04g12670 pycom07g19250 pycom12g14650
rosa_chinensis	RchiOBHm_Chr1g0368741 RchiOBHm_Chr3g0464761
rosa_laevigata	RLG00000024674 RLG00000027192
rosa_multiflora	Rmu_sc0001791.1_g000017 Rmu_sc0007114.1_g000013
rosa_roxburghii	Rroxscaffold_4G00288310 Rroxscaffold_6G00415440
rosa_rugosa	Rorug01G0344800 Rorug03G0073800 Rorug03G0073900
rosa_samantha	Rh1AG351700 Rh1BG315400 Rh3DG137900
rosa_wichuraiana	Rw3G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1152
AccII	CGCG	1 cut(s)	129
AciI	CCGC	2 cut(s)	861, 1382
AclWI	GGATC	2 cut(s)	1051, 1584
AcoI	YGGCCR	2 cut(s)	343, 1379
AcsI	RAATTY	2 cut(s)	176, 1678
AfaI	GTAC	4 cut(s)	40, 442, 500, 1418
AfiI	CCNNNNNNNGG	3 cut(s)	144, 314, 906
AjuI	GAANNNNNNNTTGG	2 cut(s)	894, 926
AlwI	GGATC	2 cut(s)	1051, 1584
Ama87I	CYCGRG	1 cut(s)	881
AoxI	GGCC	4 cut(s)	343, 388, 1197, 1379
ApeKI	GCWGC	8 cut(s)	263, 821, 950, 1130, 1340, 1343, 1554, 1661
ApoI	RAATTY	2 cut(s)	176, 1678
AspLEI	GCGC	1 cut(s)	131
AspS9I	GGNCC	5 cut(s)	388, 796, 985, 1141, 1197
AsuHPI	GGTGA	4 cut(s)	214, 236, 709, 1048
AvaI	CYCGRG	1 cut(s)	881
AvaII	GGWCC	3 cut(s)	796, 985, 1141
BaeGI	GKGCMC	1 cut(s)	528
BbsI	GAAGAC	1 cut(s)	530
BbvI	GCAGC	8 cut(s)	275, 833, 962, 1117, 1327, 1355, 1566, 1673
BccI	CCATC	1 cut(s)	1433
BceAI	ACGGC	1 cut(s)	1617
BciVI	GTATCC	1 cut(s)	407
BclI	TGATCA	1 cut(s)	1777
BfaI	CTAG	4 cut(s)	33, 941, 1193, 1704
BfmI	CTRYAG	3 cut(s)	99, 436, 1341
BfuAI	ACCTGC	1 cut(s)	1152
BfuI	GTATCC	1 cut(s)	407
BisI	GCNGC	9 cut(s)	264, 822, 951, 1131, 1341, 1344, 1382, 1555, 1662
BlsI	GCNGC	9 cut(s)	265, 823, 952, 1132, 1342, 1345, 1383, 1556, 1663
BmcAI	AGTACT	1 cut(s)	40
Bme18I	GGWCC	3 cut(s)	796, 985, 1141
BmeT110I	CYCGRG	1 cut(s)	881
BmgT120I	GGNCC	5 cut(s)	388, 796, 985, 1141, 1197
BmiI	GGNNCC	4 cut(s)	798, 986, 1198, 1410
BmrI	ACTGGG	3 cut(s)	91, 406, 1408
BmsI	GCATC	2 cut(s)	53, 322
BmuI	ACTGGG	3 cut(s)	91, 406, 1408
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	540
Bpu10I	CCTNAGC	1 cut(s)	932
BpuEI	CTTGAG	1 cut(s)	1612
BsaJI	CCNNGG	3 cut(s)	720, 901, 1001
Bsc4I	CCNNNNNNNGG	3 cut(s)	144, 314, 906
Bse118I	RCCGGY	2 cut(s)	137, 1265
Bse1I	ACTGG	5 cut(s)	86, 412, 523, 1414, 1655
Bse3DI	GCAATG	4 cut(s)	489, 1200, 1212, 1338
BseDI	CCNNGG	3 cut(s)	720, 901, 1001
BseGI	GGATG	2 cut(s)	76, 368
BseLI	CCNNNNNNNGG	3 cut(s)	144, 314, 906
BseMI	GCAATG	4 cut(s)	489, 1200, 1212, 1338
BseMII	CTCAG	3 cut(s)	522, 1514, 1777
BseNI	ACTGG	5 cut(s)	86, 412, 523, 1414, 1655
BseSI	GKGCMC	1 cut(s)	528
BseX3I	CGGCCG	1 cut(s)	1379
BseXI	GCAGC	8 cut(s)	275, 833, 962, 1117, 1327, 1355, 1566, 1673
Bsh1236I	CGCG	1 cut(s)	129
Bsh1285I	CGRYCG	2 cut(s)	1266, 1382
BshFI	GGCC	4 cut(s)	345, 390, 1199, 1381
BsiEI	CGRYCG	2 cut(s)	1266, 1382
BsiHKCI	CYCGRG	1 cut(s)	881
BsiSI	CCGG	2 cut(s)	138, 1266
BslFI	GGGAC	4 cut(s)	394, 782, 871, 998
BslI	CCNNNNNNNGG	3 cut(s)	144, 314, 906
BsmFI	GGGAC	4 cut(s)	394, 782, 871, 998
BsnI	GGCC	4 cut(s)	345, 390, 1199, 1381
BsoBI	CYCGRG	1 cut(s)	881
Bsp1286I	GDGCHC	1 cut(s)	528
Bsp143I	GATC	8 cut(s)	103, 556, 571, 700, 1056, 1375, 1576, 1777
Bsp19I	CCATGG	1 cut(s)	720
BspACI	CCGC	2 cut(s)	861, 1382
BspANI	GGCC	4 cut(s)	345, 390, 1199, 1381
BspCNI	CTCAG	3 cut(s)	521, 1515, 1776
BspFNI	CGCG	1 cut(s)	129
BspHI	TCATGA	3 cut(s)	88, 165, 472
BspLI	GGNNCC	4 cut(s)	798, 986, 1198, 1410
BspMAI	CTGCAG	2 cut(s)	440, 1345
BspMI	ACCTGC	1 cut(s)	1152
BspPI	GGATC	2 cut(s)	1051, 1584
BsrDI	GCAATG	4 cut(s)	489, 1200, 1212, 1338
BsrFI	RCCGGY	2 cut(s)	137, 1265
BsrI	ACTGG	5 cut(s)	86, 412, 523, 1414, 1655
BssAI	RCCGGY	2 cut(s)	137, 1265
BssECI	CCNNGG	3 cut(s)	720, 901, 1001
BssMI	GATC	8 cut(s)	103, 556, 571, 700, 1056, 1375, 1576, 1777
BssT1I	CCWWGG	3 cut(s)	720, 901, 1001
Bst4CI	ACNGT	1 cut(s)	1225
Bst6I	CTCTTC	4 cut(s)	109, 164, 957, 1026
BstC8I	GCNNGC	1 cut(s)	343
BstDEI	CTNAG	6 cut(s)	392, 508, 932, 1253, 1523, 1763
BstDSI	CCRYGG	1 cut(s)	720
BstF5I	GGATG	2 cut(s)	76, 368
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	131
BstKTI	GATC	8 cut(s)	106, 559, 574, 703, 1059, 1378, 1579, 1780
BstMBI	GATC	8 cut(s)	103, 556, 571, 700, 1056, 1375, 1576, 1777
BstMCI	CGRYCG	2 cut(s)	1266, 1382
BstMWI	GCNNNNNNNGC	3 cut(s)	351, 1337, 1551
BstSFI	CTRYAG	3 cut(s)	99, 436, 1341
BstSLI	GKGCMC	1 cut(s)	528
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	8 cut(s)	275, 833, 962, 1117, 1327, 1355, 1566, 1673
BstV2I	GAAGAC	1 cut(s)	530
BstZI	CGGCCG	1 cut(s)	1379
BsuI	GTATCC	1 cut(s)	407
BsuRI	GGCC	4 cut(s)	345, 390, 1199, 1381
BtgI	CCRYGG	1 cut(s)	720
BtsCI	GGATG	2 cut(s)	76, 368
BtsIMutI	CAGTG	2 cut(s)	1016, 1152
BveI	ACCTGC	1 cut(s)	1152
Cac8I	GCNNGC	1 cut(s)	343
CciI	TCATGA	3 cut(s)	88, 165, 472
CfoI	GCGC	1 cut(s)	131
Cfr10I	RCCGGY	2 cut(s)	137, 1265
Cfr13I	GGNCC	5 cut(s)	388, 796, 985, 1141, 1197
Csp6I	GTAC	4 cut(s)	39, 441, 499, 1417
CviQI	GTAC	4 cut(s)	39, 441, 499, 1417
DdeI	CTNAG	6 cut(s)	392, 508, 932, 1253, 1523, 1763
DpnI	GATC	8 cut(s)	105, 558, 573, 702, 1058, 1377, 1578, 1779
DpnII	GATC	8 cut(s)	103, 556, 571, 700, 1056, 1375, 1576, 1777
DraI	TTTAAA	1 cut(s)	1050
EaeI	YGGCCR	2 cut(s)	343, 1379
EagI	CGGCCG	1 cut(s)	1379
Eam1104I	CTCTTC	4 cut(s)	109, 164, 957, 1026
EarI	CTCTTC	4 cut(s)	109, 164, 957, 1026
EclXI	CGGCCG	1 cut(s)	1379
Eco130I	CCWWGG	3 cut(s)	720, 901, 1001
Eco47I	GGWCC	3 cut(s)	796, 985, 1141
Eco52I	CGGCCG	1 cut(s)	1379
Eco88I	CYCGRG	1 cut(s)	881
EcoT14I	CCWWGG	3 cut(s)	720, 901, 1001
ErhI	CCWWGG	3 cut(s)	720, 901, 1001
FalI	AAGNNNNNCTT	4 cut(s)	468, 500, 894, 926
FaqI	GGGAC	4 cut(s)	394, 782, 871, 998
FauI	CCCGC	1 cut(s)	868
FauNDI	CATATG	1 cut(s)	1064
FbaI	TGATCA	1 cut(s)	1777
Fnu4HI	GCNGC	9 cut(s)	264, 822, 951, 1131, 1341, 1344, 1382, 1555, 1662
FokI	GGATG	2 cut(s)	83, 355
Fsp4HI	GCNGC	9 cut(s)	264, 822, 951, 1131, 1341, 1344, 1382, 1555, 1662
FspBI	CTAG	4 cut(s)	33, 941, 1193, 1704
GlaI	GCGC	1 cut(s)	130
GluI	GCNGC	9 cut(s)	264, 822, 951, 1131, 1341, 1344, 1382, 1555, 1662
GsuI	CTGGAG	1 cut(s)	540
HaeIII	GGCC	4 cut(s)	345, 390, 1199, 1381
HapII	CCGG	2 cut(s)	138, 1266
HhaI	GCGC	1 cut(s)	131
Hin6I	GCGC	1 cut(s)	129
HinP1I	GCGC	1 cut(s)	129
HindIII	AAGCTT	4 cut(s)	150, 544, 1040, 1501
HinfI	GANTC	8 cut(s)	92, 348, 774, 884, 1237, 1249, 1443, 1490
HpaII	CCGG	2 cut(s)	138, 1266
HphI	GGTGA	4 cut(s)	214, 236, 709, 1048
Hpy166II	GTNNAC	2 cut(s)	277, 1690
Hpy188I	TCNGA	4 cut(s)	52, 1248, 1524, 1563
Hpy188III	TCNNGA	8 cut(s)	89, 166, 400, 473, 674, 881, 941, 1487
Hpy8I	GTNNAC	2 cut(s)	277, 1690
Hpy99I	CGWCG	1 cut(s)	572
HpyAV	CCTTC	7 cut(s)	748, 751, 776, 861, 900, 1609, 1728
HpyCH4III	ACNGT	1 cut(s)	1225
HpyF10VI	GCNNNNNNNGC	3 cut(s)	351, 1337, 1551
HpyF3I	CTNAG	6 cut(s)	392, 508, 932, 1253, 1523, 1763
HspAI	GCGC	1 cut(s)	129
Ksp22I	TGATCA	1 cut(s)	1777
Kzo9I	GATC	8 cut(s)	103, 556, 571, 700, 1056, 1375, 1576, 1777
LmnI	GCTCC	4 cut(s)	4, 551, 1414, 1542
Lsp1109I	GCAGC	8 cut(s)	275, 833, 962, 1117, 1327, 1355, 1566, 1673
LweI	GCATC	2 cut(s)	53, 322
MaeI	CTAG	4 cut(s)	33, 941, 1193, 1704
MaeIII	GTNAC	8 cut(s)	194, 292, 652, 736, 804, 1219, 1458, 1582
MalI	GATC	8 cut(s)	105, 558, 573, 702, 1058, 1377, 1578, 1779
MboI	GATC	8 cut(s)	103, 556, 571, 700, 1056, 1375, 1576, 1777
MboII	GAAGA	7 cut(s)	86, 126, 151, 530, 593, 974, 1043
MfeI	CAATTG	4 cut(s)	236, 610, 660, 732
MhlI	GDGCHC	1 cut(s)	528
MlyI	GAGTC	2 cut(s)	893, 1484
MmeI	TCCRAC	1 cut(s)	493
MseI	TTAA	6 cut(s)	191, 311, 1049, 1079, 1284, 1792
MslI	CAYNNNNRTG	1 cut(s)	1205
MspA1I	CMGCKG	1 cut(s)	1340
MspI	CCGG	2 cut(s)	138, 1266
MunI	CAATTG	4 cut(s)	236, 610, 660, 732
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	3 cut(s)	351, 1337, 1551
NcoI	CCATGG	1 cut(s)	720
NdeI	CATATG	1 cut(s)	1064
NdeII	GATC	8 cut(s)	103, 556, 571, 700, 1056, 1375, 1576, 1777
NlaIV	GGNNCC	4 cut(s)	798, 986, 1198, 1410
NmuCI	GTSAC	5 cut(s)	292, 652, 736, 1219, 1582
PagI	TCATGA	3 cut(s)	88, 165, 472
PcsI	WCGNNNNNNNCGW	1 cut(s)	966
PfeI	GAWTC	6 cut(s)	92, 348, 774, 1237, 1249, 1443
PflFI	GACNNNGTC	1 cut(s)	406
PkrI	GCNGC	9 cut(s)	265, 823, 952, 1132, 1342, 1345, 1383, 1556, 1663
PleI	GAGTC	2 cut(s)	892, 1484
PpsI	GAGTC	2 cut(s)	892, 1484
PspN4I	GGNNCC	4 cut(s)	798, 986, 1198, 1410
PspPI	GGNCC	5 cut(s)	388, 796, 985, 1141, 1197
PstI	CTGCAG	2 cut(s)	440, 1345
PsyI	GACNNNGTC	1 cut(s)	406
PvuII	CAGCTG	1 cut(s)	1340
RsaI	GTAC	4 cut(s)	40, 442, 500, 1418
RsaNI	GTAC	4 cut(s)	39, 441, 499, 1417
RseI	CAYNNNNRTG	1 cut(s)	1205
SaqAI	TTAA	6 cut(s)	191, 311, 1049, 1079, 1284, 1792
SatI	GCNGC	9 cut(s)	264, 822, 951, 1131, 1341, 1344, 1382, 1555, 1662
Sau3AI	GATC	8 cut(s)	103, 556, 571, 700, 1056, 1375, 1576, 1777
Sau96I	GGNCC	5 cut(s)	388, 796, 985, 1141, 1197
ScaI	AGTACT	1 cut(s)	40
SchI	GAGTC	2 cut(s)	893, 1484
SduI	GDGCHC	1 cut(s)	528
SfaNI	GCATC	2 cut(s)	53, 322
SfcI	CTRYAG	3 cut(s)	99, 436, 1341
SinI	GGWCC	3 cut(s)	796, 985, 1141
SmiMI	CAYNNNNRTG	1 cut(s)	1205
SmlI	CTYRAG	1 cut(s)	1627
SmoI	CTYRAG	1 cut(s)	1627
SsiI	CCGC	2 cut(s)	861, 1382
SspMI	CTAG	4 cut(s)	33, 941, 1193, 1704
StyI	CCWWGG	3 cut(s)	720, 901, 1001
TaaI	ACNGT	1 cut(s)	1225
TaqI	TCGA	2 cut(s)	463, 960
TatI	WGTACW	4 cut(s)	38, 440, 498, 1416
TauI	GCSGC	1 cut(s)	1384
TfiI	GAWTC	6 cut(s)	92, 348, 774, 1237, 1249, 1443
Tru1I	TTAA	6 cut(s)	191, 311, 1049, 1079, 1284, 1792
Tru9I	TTAA	6 cut(s)	191, 311, 1049, 1079, 1284, 1792
TscAI	CASTG	2 cut(s)	1023, 1159
TseFI	GTSAC	5 cut(s)	292, 652, 736, 1219, 1582
TseI	GCWGC	8 cut(s)	263, 821, 950, 1130, 1340, 1343, 1554, 1661
Tsp45I	GTSAC	5 cut(s)	292, 652, 736, 1219, 1582
TspGWI	ACGGA	2 cut(s)	593, 1207
TspRI	CASTG	2 cut(s)	1023, 1159
Tth111I	GACNNNGTC	1 cut(s)	406
VpaK11BI	GGWCC	3 cut(s)	796, 985, 1141
XapI	RAATTY	2 cut(s)	176, 1678
XbaI	TCTAGA	1 cut(s)	940
XspI	CTAG	4 cut(s)	33, 941, 1193, 1704
ZrmI	AGTACT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.