Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003626

Physical Location & Seq

Genomic Coordinates Reverse (-)

18357290 .. 18359936

Gene Structure 2647 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g23570.t6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGCCTTTAATCGGAGGGTTCTTAGCAGATGCCTACACGGGCCGATTCAACATGGTTATGTTTGCATCCCTCGTATATCTAATGGGTCTGAGTCTGTTGACAATGTCACAATTCATCCCGAGTCTAAAGCCCTGCAAAACGGAGATATGTCGACAGCCTAGAAAGCTTCATGAAGTGTTGCTCTTTGTTGCCTTGTACTTCATCTCTGTTGGAACCGGAGGTCACAAGCCCTGTCTTCAAAGCTTTGGAGCTGATCAATTCGACGATGATCACTTGGAAGAAAGAAAGAAGAAAATGTCTTTCTTCAACTGGTGGAACTTTGCACTTTGTTGTGGGCTGTTTCTTGGTGTAACTGTGATTGTTTATGTTCAGGACTCAGTGAGCTGGGGGGTAGCAGACCTTGTTCTCACAATCACCCTGGCTATTACAATAGTGACGTTTTACATGGGGAAATATTGTTACCGTTATAGAGTAGCACATGGAAGCCCTTTGATACCCATGTTACAGGTCTTGGTTGCAGCCATTAGAAAAAGAAATTTGCCCAATCCTCAAAACCCTGATCTGCTCTTTGAAGTTCCCAAGTCAGAGAAGTACTCCCATGGAAGGCTTCTACTTCACACAAATAGGCTCAGGTTTCTAGACAAGGCTGCGATAATCGATCGCGAAGAGAATGAGAACTACCAATCTTGTGAGCAAAAACACAACCCTTGGAGATTGGCTACATTGACAAGAGTGGAGGAATTGAAACTCATCTTGAACATGATCCCCATTTGGCTCACCTTATTACCAAATACAGTGTGTTTGGCACAAGCATCGACCTTTTTCGTTAAACAAGCTGCTACAATGAACCGCAACATCACTAACGACTTCAAGATCCCACCGGCCTCCATTTTCTCTCTTGGAGCCATTGCAATGCTAGTCTCAGTCATGGTCTACGACAAAGTTCTTGTCCCAATGCTGCGTAAAGCCACCGGCAACGAAAGGGGTATGAACATCCTCCATAGGATCGGAGTCGGGATGATACTTGTGGTGATAGCAATGGCCGTTACGGCACTAGTTGAACGAAAAAGGCTACAATATGCTGATCCACAAGCTATGAGTGTGTTCTGGTTAGCTCCTCAGTACATAATTCTTGGTATAGGGGATGCATTTGCTCTGGTTGGTTTGCAAGAGTATTTTTATGACCAAGTTCCGGACTCAATGAGAAGCTTAGGGGTTGCTTTGTACTTGAGTGTGATTGGGGTTGGGAGCTTCTTGAGCAGCTTTCTAATTAGTGTTTTGGATCATGTTACAGCGAAGTATGGGAGAAGTTGGTTTGGGAAGGACTTGAGTGGAAGCCGCTTGGACAATTTCTTCTGGCTATTGGCAGCCCTGAATGGGTTGAATTTATGTGTGTATGGGTACTTTGCTAGAGGTTATACCTACAAAAATGTGGACCGGAGAGTAGCTTTGGGTGATCACTCTGTTAGGAATGGAAATGATCAATCCATTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

499

Amino Acids

56.13

Weight (kDa)

9.17

Isoelectric Point (pI)

34.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	3 - 420	1.6e-11	Major Facilitator Superfamily
PTR2	PF00854	16 - 433	1.9e-85	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37900 AT2G37900 AT3G53960
fragaria_vesca	FvH4_6g12770 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570
malus_domestica	MD01G1141500.v1.1 MD04G1138500.v1.1 MD07G1205700.v1.1 MD12G1153900.v1.1 MD12G1154200.v1.1
prunus_persica	Prupe.2G241800_v2.0.a1 Prupe.6G264100_v2.0.a1
pyrus_communis	pycom04g12670 pycom07g19250 pycom12g14650
rosa_chinensis	RchiOBHm_Chr1g0368741 RchiOBHm_Chr3g0464761
rosa_laevigata	RLG00000024674 RLG00000027192
rosa_multiflora	Rmu_sc0001791.1_g000017 Rmu_sc0007114.1_g000013
rosa_roxburghii	Rroxscaffold_4G00288310 Rroxscaffold_6G00415440
rosa_rugosa	Rorug01G0344800 Rorug03G0073800 Rorug03G0073900
rosa_samantha	Rh1AG351700 Rh1BG315400 Rh3DG137900
rosa_wichuraiana	Rw3G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	151, 933
AccII	CGCG	1 cut(s)	663
AccIII	TCCGGA	1 cut(s)	1192
AciI	CCGC	2 cut(s)	850, 1339
AclWI	GGATC	5 cut(s)	757, 868, 1013, 1079, 1290
AcoI	YGGCCR	1 cut(s)	1041
AcsI	RAATTY	2 cut(s)	535, 1384
AfaI	GTAC	5 cut(s)	197, 593, 1124, 1226, 1403
AfiI	CCNNNNNNNGG	4 cut(s)	11, 603, 1192, 1377
AgsI	TTSAA	9 cut(s)	49, 239, 307, 572, 745, 757, 871, 1061, 1384
AhlI	ACTAGT	1 cut(s)	1054
AjnI	CCWGG	1 cut(s)	417
Alw26I	GTCTC	1 cut(s)	925
AlwI	GGATC	5 cut(s)	757, 868, 1013, 1079, 1290
Ama87I	CYCGRG	1 cut(s)	118
Aor13HI	TCCGGA	1 cut(s)	1192
AoxI	GGCC	3 cut(s)	40, 882, 1041
ApeKI	GCWGC	6 cut(s)	518, 647, 836, 958, 1260, 1367
ApoI	RAATTY	2 cut(s)	535, 1384
ArsI	GACNNNNNNTTYG	2 cut(s)	933, 965
AspS9I	GGNCC	2 cut(s)	40, 1435
AsuHPI	GGTGA	4 cut(s)	406, 769, 1042, 1466
AvaI	CYCGRG	1 cut(s)	118
AvaII	GGWCC	1 cut(s)	1435
BaeI	ACNNNNGTAYC	2 cut(s)	485, 518
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	6 cut(s)	530, 634, 823, 945, 1272, 1379
BceAI	ACGGC	2 cut(s)	1028, 1065
BcgI	CGANNNNNNTGC	2 cut(s)	795, 829
BciT130I	CCWGG	1 cut(s)	419
BclI	TGATCA	4 cut(s)	253, 268, 1456, 1480
BcoDI	GTCTC	1 cut(s)	925
BcuI	ACTAGT	1 cut(s)	1054
BfaI	CTAG	5 cut(s)	159, 638, 917, 1055, 1410
BglI	GCCNNNNNGGC	1 cut(s)	1049
BisI	GCNGC	7 cut(s)	519, 648, 837, 959, 1261, 1339, 1368
BlsI	GCNGC	7 cut(s)	520, 649, 838, 960, 1262, 1340, 1369
BmcAI	AGTACT	1 cut(s)	593
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	1435
BmeT110I	CYCGRG	1 cut(s)	118
BmgT120I	GGNCC	2 cut(s)	40, 1435
BmiI	GGNNCC	2 cut(s)	214, 904
BmrFI	CCNGG	1 cut(s)	419
BmsI	GCATC	4 cut(s)	19, 74, 821, 1135
BpiI	GAAGAC	1 cut(s)	227
BplI	GAGNNNNNCTC	2 cut(s)	578, 610
Bpu10I	CCTNAGC	2 cut(s)	629, 1210
BpuEI	CTTGAG	3 cut(s)	1249, 1276, 1348
Bsa29I	ATCGAT	1 cut(s)	657
BsaJI	CCNNGG	3 cut(s)	417, 598, 707
BsaWI	WCCGGW	3 cut(s)	215, 1192, 1437
Bsc4I	CCNNNNNNNGG	4 cut(s)	11, 603, 1192, 1377
Bse118I	RCCGGY	2 cut(s)	880, 971
Bse1I	ACTGG	1 cut(s)	314
Bse3DI	GCAATG	4 cut(s)	906, 918, 1044, 1488
BseAI	TCCGGA	1 cut(s)	1192
BseBI	CCWGG	1 cut(s)	419
BseCI	ATCGAT	1 cut(s)	657
BseDI	CCNNGG	3 cut(s)	417, 598, 707
BseGI	GGATG	5 cut(s)	65, 114, 993, 1023, 1150
BseLI	CCNNNNNNNGG	4 cut(s)	11, 603, 1192, 1377
BseMI	GCAATG	4 cut(s)	906, 918, 1044, 1488
BseMII	CTCAG	5 cut(s)	80, 390, 643, 936, 1133
BseNI	ACTGG	1 cut(s)	314
BseRI	GAGGAG	1 cut(s)	1107
BseXI	GCAGC	6 cut(s)	530, 634, 823, 945, 1272, 1379
BseYI	CCCAGC	1 cut(s)	384
Bsh1236I	CGCG	1 cut(s)	663
Bsh1285I	CGRYCG	1 cut(s)	661
BshFI	GGCC	3 cut(s)	42, 884, 1043
BshVI	ATCGAT	1 cut(s)	657
BsiEI	CGRYCG	1 cut(s)	661
BsiHKCI	CYCGRG	1 cut(s)	118
BsiSI	CCGG	5 cut(s)	216, 881, 972, 1193, 1438
BslFI	GGGAC	1 cut(s)	935
BslI	CCNNNNNNNGG	4 cut(s)	11, 603, 1192, 1377
BsmAI	GTCTC	1 cut(s)	925
BsmFI	GGGAC	1 cut(s)	935
BsnI	GGCC	3 cut(s)	42, 884, 1043
BsoBI	CYCGRG	1 cut(s)	118
Bsp13I	TCCGGA	1 cut(s)	1192
Bsp19I	CCATGG	1 cut(s)	598
Bsp68I	TCGCGA	1 cut(s)	663
BspACI	CCGC	2 cut(s)	850, 1339
BspANI	GGCC	3 cut(s)	42, 884, 1043
BspCNI	CTCAG	5 cut(s)	81, 389, 642, 935, 1132
BspDI	ATCGAT	1 cut(s)	657
BspEI	TCCGGA	1 cut(s)	1192
BspFNI	CGCG	1 cut(s)	663
BspHI	TCATGA	1 cut(s)	169
BspLI	GGNNCC	2 cut(s)	214, 904
BspPI	GGATC	5 cut(s)	757, 868, 1013, 1079, 1290
BsrDI	GCAATG	4 cut(s)	906, 918, 1044, 1488
BsrFI	RCCGGY	2 cut(s)	880, 971
BsrI	ACTGG	1 cut(s)	314
BssAI	RCCGGY	2 cut(s)	880, 971
BssECI	CCNNGG	3 cut(s)	417, 598, 707
BssT1I	CCWWGG	2 cut(s)	598, 707
Bst2UI	CCWGG	1 cut(s)	419
Bst4CI	ACNGT	3 cut(s)	355, 464, 796
Bst6I	CTCTTC	1 cut(s)	660
BstDEI	CTNAG	8 cut(s)	22, 89, 376, 629, 922, 1119, 1210, 1494
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	5 cut(s)	65, 114, 993, 1023, 1150
BstFNI	CGCG	1 cut(s)	663
BstMAI	GTCTC	1 cut(s)	925
BstMCI	CGRYCG	1 cut(s)	661
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 1049, 1257
BstNI	CCWGG	1 cut(s)	419
BstSCI	CCNGG	1 cut(s)	417
BstUI	CGCG	1 cut(s)	663
BstV1I	GCAGC	6 cut(s)	530, 634, 823, 945, 1272, 1379
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	873
BstYI	RGATCY	1 cut(s)	873
Bsu15I	ATCGAT	1 cut(s)	657
BsuRI	GGCC	3 cut(s)	42, 884, 1043
BsuTUI	ATCGAT	1 cut(s)	657
BtgI	CCRYGG	1 cut(s)	598
BtsCI	GGATG	5 cut(s)	65, 114, 993, 1023, 1150
BtsIMutI	CAGTG	2 cut(s)	384, 801
BtuMI	TCGCGA	1 cut(s)	663
CciI	TCATGA	1 cut(s)	169
Cfr10I	RCCGGY	2 cut(s)	880, 971
Cfr13I	GGNCC	2 cut(s)	40, 1435
ClaI	ATCGAT	1 cut(s)	657
Csp6I	GTAC	5 cut(s)	196, 592, 1123, 1225, 1402
CviAII	CATG	9 cut(s)	52, 170, 445, 479, 499, 599, 760, 928, 1286
CviQI	GTAC	5 cut(s)	196, 592, 1123, 1225, 1402
DdeI	CTNAG	8 cut(s)	22, 89, 376, 629, 922, 1119, 1210, 1494
EaeI	YGGCCR	1 cut(s)	1041
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Eco130I	CCWWGG	2 cut(s)	598, 707
Eco47I	GGWCC	1 cut(s)	1435
Eco88I	CYCGRG	1 cut(s)	118
EcoRII	CCWGG	1 cut(s)	417
EcoT14I	CCWWGG	2 cut(s)	598, 707
EcoT22I	ATGCAT	1 cut(s)	1150
ErhI	CCWWGG	2 cut(s)	598, 707
FaeI	CATG	9 cut(s)	55, 173, 448, 482, 502, 602, 763, 931, 1289
FaqI	GGGAC	1 cut(s)	935
FatI	CATG	9 cut(s)	51, 169, 444, 478, 498, 598, 759, 927, 1285
FbaI	TGATCA	4 cut(s)	253, 268, 1456, 1480
FblI	GTMKAC	2 cut(s)	151, 933
Fnu4HI	GCNGC	7 cut(s)	519, 648, 837, 959, 1261, 1339, 1368
FokI	GGATG	5 cut(s)	52, 101, 980, 1030, 1157
Fsp4HI	GCNGC	7 cut(s)	519, 648, 837, 959, 1261, 1339, 1368
FspBI	CTAG	5 cut(s)	159, 638, 917, 1055, 1410
GluI	GCNGC	7 cut(s)	519, 648, 837, 959, 1261, 1339, 1368
GsaI	CCCAGC	1 cut(s)	388
HaeIII	GGCC	3 cut(s)	42, 884, 1043
HapII	CCGG	5 cut(s)	216, 881, 972, 1193, 1438
Hin1II	CATG	9 cut(s)	55, 173, 448, 482, 502, 602, 763, 931, 1289
HincII	GTYRAC	2 cut(s)	99, 152
HindII	GTYRAC	2 cut(s)	99, 152
HindIII	AAGCTT	3 cut(s)	164, 241, 1207
HinfI	GANTC	6 cut(s)	45, 91, 121, 374, 1011, 1196
HpaII	CCGG	5 cut(s)	216, 881, 972, 1193, 1438
HphI	GGTGA	4 cut(s)	406, 769, 1042, 1466
Hpy166II	GTNNAC	4 cut(s)	99, 152, 934, 1435
Hpy188I	TCNGA	4 cut(s)	14, 90, 586, 1010
Hpy8I	GTNNAC	4 cut(s)	99, 152, 934, 1435
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	2 cut(s)	597, 1315
HpyCH4III	ACNGT	3 cut(s)	355, 464, 796
HpyCH4IV	ACGT	1 cut(s)	437
HpyCH4V	TGCA	7 cut(s)	65, 135, 323, 518, 911, 1148, 1168
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 1049, 1257
HpyF3I	CTNAG	8 cut(s)	22, 89, 376, 629, 922, 1119, 1210, 1494
HpySE526I	ACGT	1 cut(s)	437
Hsp92II	CATG	9 cut(s)	55, 173, 448, 482, 502, 602, 763, 931, 1289
Kpn2I	TCCGGA	1 cut(s)	1192
Ksp22I	TGATCA	4 cut(s)	253, 268, 1456, 1480
LmnI	GCTCC	4 cut(s)	248, 902, 1120, 1248
Lsp1109I	GCAGC	6 cut(s)	530, 634, 823, 945, 1272, 1379
LweI	GCATC	4 cut(s)	19, 74, 821, 1135
MaeI	CTAG	5 cut(s)	159, 638, 917, 1055, 1410
MaeII	ACGT	1 cut(s)	437
MaeIII	GTNAC	8 cut(s)	105, 221, 349, 433, 458, 501, 1045, 1288
MboII	GAAGA	6 cut(s)	227, 290, 295, 301, 677, 1345
MflI	RGATCY	1 cut(s)	873
MluCI	AATT	8 cut(s)	110, 257, 535, 740, 1128, 1269, 1348, 1384
MlyI	GAGTC	5 cut(s)	100, 130, 368, 1020, 1190
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	9 cut(s)	8, 80, 212, 558, 730, 895, 1007, 1128, 1406
Mph1103I	ATGCAT	1 cut(s)	1150
MroI	TCCGGA	1 cut(s)	1192
MseI	TTAA	2 cut(s)	8, 828
MslI	CAYNNNNRTG	2 cut(s)	56, 911
MspI	CCGG	5 cut(s)	216, 881, 972, 1193, 1438
MspR9I	CCNGG	1 cut(s)	419
MvaI	CCWGG	1 cut(s)	419
MvnI	CGCG	1 cut(s)	663
MwoI	GCNNNNNNNGC	3 cut(s)	163, 1049, 1257
NcoI	CCATGG	1 cut(s)	598
NlaIII	CATG	9 cut(s)	55, 173, 448, 482, 502, 602, 763, 931, 1289
NlaIV	GGNNCC	2 cut(s)	214, 904
NmuCI	GTSAC	3 cut(s)	105, 221, 433
NruI	TCGCGA	1 cut(s)	663
NsiI	ATGCAT	1 cut(s)	1150
PagI	TCATGA	1 cut(s)	169
PfeI	GAWTC	1 cut(s)	45
PflFI	GACNNNGTC	1 cut(s)	103
PkrI	GCNGC	7 cut(s)	520, 649, 838, 960, 1262, 1340, 1369
Ple19I	CGATCG	1 cut(s)	661
PleI	GAGTC	5 cut(s)	99, 129, 368, 1019, 1190
PpsI	GAGTC	5 cut(s)	99, 129, 368, 1019, 1190
Psp6I	CCWGG	1 cut(s)	417
PspFI	CCCAGC	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	417
PspN4I	GGNNCC	2 cut(s)	214, 904
PspPI	GGNCC	2 cut(s)	40, 1435
PsuI	RGATCY	1 cut(s)	873
PsyI	GACNNNGTC	1 cut(s)	103
PvuI	CGATCG	1 cut(s)	661
RruI	TCGCGA	1 cut(s)	663
RsaI	GTAC	5 cut(s)	197, 593, 1124, 1226, 1403
RsaNI	GTAC	5 cut(s)	196, 592, 1123, 1225, 1402
RseI	CAYNNNNRTG	2 cut(s)	56, 911
SalI	GTCGAC	1 cut(s)	150
SaqAI	TTAA	2 cut(s)	8, 828
SatI	GCNGC	7 cut(s)	519, 648, 837, 959, 1261, 1339, 1368
Sau96I	GGNCC	2 cut(s)	40, 1435
ScaI	AGTACT	1 cut(s)	593
SchI	GAGTC	5 cut(s)	100, 130, 368, 1020, 1190
ScrFI	CCNGG	1 cut(s)	419
SfaNI	GCATC	4 cut(s)	19, 74, 821, 1135
SinI	GGWCC	1 cut(s)	1435
SmiMI	CAYNNNNRTG	2 cut(s)	56, 911
SmlI	CTYRAG	3 cut(s)	1228, 1255, 1327
SmoI	CTYRAG	3 cut(s)	1228, 1255, 1327
SpeI	ACTAGT	1 cut(s)	1054
Sse9I	AATT	8 cut(s)	110, 257, 535, 740, 1128, 1269, 1348, 1384
SsiI	CCGC	2 cut(s)	850, 1339
SspI	AATATT	1 cut(s)	455
SspMI	CTAG	5 cut(s)	159, 638, 917, 1055, 1410
StyD4I	CCNGG	1 cut(s)	417
StyI	CCWWGG	2 cut(s)	598, 707
TaaI	ACNGT	3 cut(s)	355, 464, 796
TaiI	ACGT	1 cut(s)	440
TaqI	TCGA	4 cut(s)	151, 261, 657, 815
TasI	AATT	8 cut(s)	110, 257, 535, 740, 1128, 1269, 1348, 1384
TatI	WGTACW	4 cut(s)	195, 591, 1122, 1224
TauI	GCSGC	1 cut(s)	1341
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	2 cut(s)	8, 828
Tru9I	TTAA	2 cut(s)	8, 828
TscAI	CASTG	2 cut(s)	384, 801
TseFI	GTSAC	3 cut(s)	105, 221, 433
TseI	GCWGC	6 cut(s)	518, 647, 836, 958, 1260, 1367
Tsp45I	GTSAC	3 cut(s)	105, 221, 433
TspDTI	ATGAA	6 cut(s)	103, 158, 186, 190, 860, 1004
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	2 cut(s)	384, 801
Tth111I	GACNNNGTC	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	1435
XapI	RAATTY	2 cut(s)	535, 1384
XbaI	TCTAGA	1 cut(s)	637
XmiI	GTMKAC	2 cut(s)	151, 933
XspI	CTAG	5 cut(s)	159, 638, 917, 1055, 1410
ZrmI	AGTACT	1 cut(s)	593
Zsp2I	ATGCAT	1 cut(s)	1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.