Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001791.1

Orthogroup ID

OG0003626

Physical Location & Seq

Genomic Coordinates Reverse (-)

104609 .. 105142

Gene Structure 534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001791.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgtcgcaattcatcccaagtctaaagccttgcaaaacgaagatgtgtccacagcctagaaagcttcatgaagtgttactttttgttgccttgtacttcatctctgttggaaccggaggtcacaagccatgtcttcaaagctttggcgctgaccaattcgacgatgatcacttggaagaaagaaagaagaaaatgtccttcttcaactggtggaactttgcactttgttgtgggctgtttcttggtgtaactgtgattgtttacgttcaggactcagtgagctggggcgtagcagatcttgttctcacaatcaccctggctattgcaatagtgacgttttatatggggaagtattgttaccgttatagagtggcacaaggaagccctttgagacccatgctacaggtcttggttgcagccattagaaaaagaaatttgcccaatcctcaaaaccctgatcttctatttgaagttcccaagtcagagaagtactcccaaggaaggcttctacttcacacaaataggctcaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

177

Amino Acids

20.29

Weight (kDa)

9.49

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37900 AT2G37900 AT3G53960
fragaria_vesca	FvH4_6g12770 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570
malus_domestica	MD01G1141500.v1.1 MD04G1138500.v1.1 MD07G1205700.v1.1 MD12G1153900.v1.1 MD12G1154200.v1.1
prunus_persica	Prupe.2G241800_v2.0.a1 Prupe.6G264100_v2.0.a1
pyrus_communis	pycom04g12670 pycom07g19250 pycom12g14650
rosa_chinensis	RchiOBHm_Chr1g0368741 RchiOBHm_Chr3g0464761
rosa_laevigata	RLG00000024674 RLG00000027192
rosa_multiflora	Rmu_sc0001791.1_g000017 Rmu_sc0007114.1_g000013
rosa_roxburghii	Rroxscaffold_4G00288310 Rroxscaffold_6G00415440
rosa_rugosa	Rorug01G0344800 Rorug03G0073800 Rorug03G0073900
rosa_samantha	Rh1AG351700 Rh1BG315400 Rh3DG137900
rosa_wichuraiana	Rw3G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	433
AfaI	GTAC	2 cut(s)	95, 491
AfiI	CCNNNNNNNGG	1 cut(s)	501
AgsI	TTSAA	3 cut(s)	137, 205, 470
AjnI	CCWGG	1 cut(s)	315
AjuI	GAANNNNNNNTTGG	2 cut(s)	489, 521
AluBI	AGCT	3 cut(s)	64, 141, 282
AluI	AGCT	3 cut(s)	64, 141, 282
Alw26I	GTCTC	1 cut(s)	385
ApeKI	GCWGC	1 cut(s)	416
ApoI	RAATTY	1 cut(s)	433
AspLEI	GCGC	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	304
BarI	GAAGNNNNNNTAC	2 cut(s)	341, 373
BbsI	GAAGAC	1 cut(s)	125
BbvI	GCAGC	1 cut(s)	428
BciT130I	CCWGG	1 cut(s)	317
BclI	TGATCA	1 cut(s)	166
BcoDI	GTCTC	1 cut(s)	385
BfaI	CTAG	1 cut(s)	57
BfmI	CTRYAG	1 cut(s)	401
BfoI	RGCGCY	1 cut(s)	150
BglII	AGATCT	1 cut(s)	295
BisI	GCNGC	1 cut(s)	417
BlsI	GCNGC	1 cut(s)	418
BmcAI	AGTACT	1 cut(s)	491
Bme1390I	CCNGG	1 cut(s)	317
BmiI	GGNNCC	1 cut(s)	112
BmrFI	CCNGG	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	125
BplI	GAGNNNNNCTC	2 cut(s)	476, 508
Bpu10I	CCTNAGC	1 cut(s)	527
BsaI	GGTCTC	1 cut(s)	385
BsaJI	CCNNGG	2 cut(s)	315, 496
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	1 cut(s)	501
Bse1I	ACTGG	1 cut(s)	212
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	315, 496
BseGI	GGATG	1 cut(s)	12
BseLI	CCNNNNNNNGG	1 cut(s)	501
BseMII	CTCAG	1 cut(s)	288
BseNI	ACTGG	1 cut(s)	212
BseXI	GCAGC	1 cut(s)	428
BseYI	CCCAGC	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	114
BslI	CCNNNNNNNGG	1 cut(s)	501
BsmAI	GTCTC	1 cut(s)	385
Bso31I	GGTCTC	1 cut(s)	385
Bsp143I	GATC	3 cut(s)	166, 295, 457
BspCNI	CTCAG	1 cut(s)	287
BspHI	TCATGA	1 cut(s)	67
BspLI	GGNNCC	1 cut(s)	112
BspTNI	GGTCTC	1 cut(s)	385
BsrI	ACTGG	1 cut(s)	212
BssECI	CCNNGG	2 cut(s)	315, 496
BssMI	GATC	3 cut(s)	166, 295, 457
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	253, 362
BstDEI	CTNAG	2 cut(s)	274, 527
BstF5I	GGATG	1 cut(s)	12
BstH2I	RGCGCY	1 cut(s)	150
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	3 cut(s)	169, 298, 460
BstMAI	GTCTC	1 cut(s)	385
BstMBI	GATC	3 cut(s)	166, 295, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	1 cut(s)	315
BstSFI	CTRYAG	1 cut(s)	401
BstV1I	GCAGC	1 cut(s)	428
BstV2I	GAAGAC	1 cut(s)	125
BstX2I	RGATCY	1 cut(s)	295
BstYI	RGATCY	1 cut(s)	295
BtsCI	GGATG	1 cut(s)	12
BtsIMutI	CAGTG	1 cut(s)	282
CciI	TCATGA	1 cut(s)	67
CfoI	GCGC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	94, 490
CviAII	CATG	3 cut(s)	68, 129, 397
CviQI	GTAC	2 cut(s)	94, 490
DdeI	CTNAG	2 cut(s)	274, 527
DpnI	GATC	3 cut(s)	168, 297, 459
DpnII	GATC	3 cut(s)	166, 295, 457
Eco130I	CCWWGG	1 cut(s)	496
Eco31I	GGTCTC	1 cut(s)	385
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	3 cut(s)	71, 132, 400
FaiI	YATR	6 cut(s)	69, 130, 342, 344, 366, 398
FalI	AAGNNNNNCTT	4 cut(s)	63, 95, 489, 521
FatI	CATG	3 cut(s)	67, 128, 396
FbaI	TGATCA	1 cut(s)	166
Fnu4HI	GCNGC	1 cut(s)	417
Fsp4HI	GCNGC	1 cut(s)	417
FspBI	CTAG	1 cut(s)	57
GlaI	GCGC	1 cut(s)	148
GluI	GCNGC	1 cut(s)	417
GsaI	CCCAGC	1 cut(s)	286
HaeII	RGCGCY	1 cut(s)	150
HapII	CCGG	1 cut(s)	114
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	3 cut(s)	71, 132, 400
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HindIII	AAGCTT	2 cut(s)	62, 139
HinfI	GANTC	1 cut(s)	272
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	2 cut(s)	50, 262
Hpy188I	TCNGA	1 cut(s)	484
Hpy188III	TCNNGA	2 cut(s)	68, 269
Hpy8I	GTNNAC	2 cut(s)	50, 262
Hpy99I	CGWCG	1 cut(s)	164
HpyAV	CCTTC	2 cut(s)	208, 495
HpyCH4III	ACNGT	2 cut(s)	253, 362
HpyCH4IV	ACGT	2 cut(s)	264, 335
HpyCH4V	TGCA	4 cut(s)	33, 221, 326, 416
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	2 cut(s)	274, 527
HpySE526I	ACGT	2 cut(s)	264, 335
Hsp92II	CATG	3 cut(s)	71, 132, 400
HspAI	GCGC	1 cut(s)	147
Ksp22I	TGATCA	1 cut(s)	166
Kzo9I	GATC	3 cut(s)	166, 295, 457
LpnPI	CCDG	9 cut(s)	127, 193, 254, 268, 302, 329, 389, 468, 514
Lsp1109I	GCAGC	1 cut(s)	428
MaeI	CTAG	1 cut(s)	57
MaeII	ACGT	2 cut(s)	264, 335
MaeIII	GTNAC	5 cut(s)	75, 119, 247, 331, 356
MalI	GATC	3 cut(s)	168, 297, 459
MboI	GATC	3 cut(s)	166, 295, 457
MboII	GAAGA	6 cut(s)	52, 125, 188, 193, 199, 452
MflI	RGATCY	1 cut(s)	295
MluCI	AATT	3 cut(s)	8, 155, 433
MlyI	GAGTC	1 cut(s)	266
MmeI	TCCRAC	1 cut(s)	88
MnlI	CCTC	2 cut(s)	110, 456
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MwoI	GCNNNNNNNGC	1 cut(s)	61
NdeII	GATC	3 cut(s)	166, 295, 457
NlaIII	CATG	3 cut(s)	71, 132, 400
NlaIV	GGNNCC	1 cut(s)	112
NmuCI	GTSAC	2 cut(s)	119, 331
PagI	TCATGA	1 cut(s)	67
PkrI	GCNGC	1 cut(s)	418
PleI	GAGTC	1 cut(s)	266
PpsI	GAGTC	1 cut(s)	266
Psp6I	CCWGG	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	282
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	1 cut(s)	112
PsuI	RGATCY	1 cut(s)	295
RsaI	GTAC	2 cut(s)	95, 491
RsaNI	GTAC	2 cut(s)	94, 490
SatI	GCNGC	1 cut(s)	417
Sau3AI	GATC	3 cut(s)	166, 295, 457
ScaI	AGTACT	1 cut(s)	491
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	1 cut(s)	317
SetI	ASST	8 cut(s)	66, 121, 143, 267, 284, 338, 408, 533
SfcI	CTRYAG	1 cut(s)	401
Sse9I	AATT	3 cut(s)	8, 155, 433
SspMI	CTAG	1 cut(s)	57
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	2 cut(s)	253, 362
TaiI	ACGT	2 cut(s)	267, 338
TaqI	TCGA	1 cut(s)	159
TasI	AATT	3 cut(s)	8, 155, 433
TatI	WGTACW	2 cut(s)	93, 489
TscAI	CASTG	1 cut(s)	282
TseFI	GTSAC	2 cut(s)	119, 331
TseI	GCWGC	1 cut(s)	416
Tsp45I	GTSAC	2 cut(s)	119, 331
TspDTI	ATGAA	3 cut(s)	56, 84, 88
TspRI	CASTG	1 cut(s)	282
XapI	RAATTY	1 cut(s)	433
XspI	CTAG	1 cut(s)	57
ZrmI	AGTACT	1 cut(s)	491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.