Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0003626

Physical Location & Seq

Genomic Coordinates Reverse (-)

44900136 .. 44902329

Gene Structure 2194 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG315400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ATGCTTTTAATCGGAGGGTTCTTAGCAGATGCCTACACTGGTCGATTCAACATGGTTATGTTTTCATCCCTCATATATCTAATGGGTCTGAGTCTCTTGGCAATGTCGCAATTCATCCCAAGTCTAAAGCCTTGCAACACGAAAATATGTCGACAGCCTAGAAAGCTTCATGTAGTATTACTTTTTGTTGCCTTGTACTTCATCTCTGTTGGAACCGGAGGTCACAAGCCATGTCTTCAAAGCTTTGGTGCTGACCAATTCGACGATGATCACTTGGAAGAAAGAAAGAAGAAAATGTCTTTCTTCAATTGGTGGAACTTTGCACTTTGTTGTGGGCTGTTTCTTGGTGTAACTGTGATTGTTTATGTTCAGGACTCAGTGAGCTGGGCAAGGTCCCATTTTTCCCATGTGGGATGTATATATTCTCAACACTGGGGCGTAGCAGATCTTGTTCTCACAATCACCCTGGCTATTACAATAGTGACGTTTTATATGGGGAAGTATTGCTACCGTTATAGAGTAGCACAAGGAAGCCCTCTGAGACCCATGTTACAGGTCTTGGTTGCAGCCATTAGAAAAAGAAATTTGCCCAATCCTCAAAACCCTGATCTGCTATTTGAAGTTCCCAAGTCAGAGAAGTACTCCCAAGGAAGGCTTCTACTTCACACAAATAGGCTCAGGTTTCTAGACAAGGCCGCAATAATTGAAGAGAATGAGAACTGCCCATCTTGTGAACAGAAGCACAACCCTTGGAGATTGGCTACATTGACAAGAGTGGAGGAGTTGAAACTCATCTTGAGCATGATCCCCATTTGGCTCACCTCATTAACAAATGCAGTGTGTTTGGCACAGGCCCCGACCTTCTTTGTTAAACAAGCTGCTACAATGAACCGAAATATTACTAACAACTGCAAGATCCCACCAGCCACCATTTTCTCTCTTGGAGCCATTGCAATGCTAATCTCAGTCACTGTCTATGACAAAATTCTAGTTCCAATTCTACGGAAAGCCACAGGAAATGAAAGGGGTATGAATATCCTCCATAGGATCGGATTTGGGATGATACTTACGGTGATAGCAATGTCCGTGGCAGCACTTGTTGAACGAAAAAGGCTAAGATATGCAGATCCACAAGCTATGAGTGTGTTCTGGTTAGCACCCCAGTACATAATTCTTGGTATAGGGGATGCATTTGCTCTGGTCGGTTTGCAAGAGTATTTCTATGACCAAGTTCCTGACTCAATGAGAAGTTTAGGGGTTGCTTTGTACTTGAGTGTGATTGGGGTTGGGAGCTTCTTGAGCAGCTTTTTAATTATTGCTATAGATCATGTTACAGAGAAGGATGGGAGGAGTTGGTTTGGGAAGGACTTGAGTGGAAGCCGCTTGGACAATTTCTTCTGGCTTTTGGCAGCCATGAATGGGTTGAATTCATGTGTTTATGGGTATTTGGCTAGGGGTTATACCTACAAGAATGTGGAGAGGAGAGTAGTTTTGGGTGATAATTCTGTGACTAATGGAAATGATCAATCCATGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

512

Amino Acids

57.55

Weight (kDa)

9.25

Isoelectric Point (pI)

38.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	2 - 434	1.1e-09	Major Facilitator Superfamily
PTR2	PF00854	16 - 446	1.5e-81	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37900 AT2G37900 AT3G53960
fragaria_vesca	FvH4_6g12770 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570
malus_domestica	MD01G1141500.v1.1 MD04G1138500.v1.1 MD07G1205700.v1.1 MD12G1153900.v1.1 MD12G1154200.v1.1
prunus_persica	Prupe.2G241800_v2.0.a1 Prupe.6G264100_v2.0.a1
pyrus_communis	pycom04g12670 pycom07g19250 pycom12g14650
rosa_chinensis	RchiOBHm_Chr1g0368741 RchiOBHm_Chr3g0464761
rosa_laevigata	RLG00000024674 RLG00000027192
rosa_multiflora	Rmu_sc0001791.1_g000017 Rmu_sc0007114.1_g000013
rosa_roxburghii	Rroxscaffold_4G00288310 Rroxscaffold_6G00415440
rosa_rugosa	Rorug01G0344800 Rorug03G0073800 Rorug03G0073900
rosa_samantha	Rh1AG351700 Rh1BG315400 Rh3DG137900
rosa_wichuraiana	Rw3G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	151
AciI	CCGC	2 cut(s)	696, 1381
AclWI	GGATC	4 cut(s)	799, 910, 1055, 1121
AcsI	RAATTY	3 cut(s)	583, 984, 1426
AfaI	GTAC	4 cut(s)	197, 641, 1166, 1268
AfiI	CCNNNNNNNGG	2 cut(s)	651, 1419
AgsI	TTSAA	8 cut(s)	49, 239, 307, 620, 707, 787, 1103, 1426
AjnI	CCWGG	1 cut(s)	465
AjuI	GAANNNNNNNTTGG	2 cut(s)	639, 671
AluBI	AGCT	7 cut(s)	166, 243, 384, 878, 1136, 1293, 1305
AluI	AGCT	7 cut(s)	166, 243, 384, 878, 1136, 1293, 1305
Alw26I	GTCTC	2 cut(s)	98, 535
AlwI	GGATC	4 cut(s)	799, 910, 1055, 1121
AlwNI	CAGNNNCTG	1 cut(s)	971
AoxI	GGCC	2 cut(s)	693, 852
ApeKI	GCWGC	5 cut(s)	566, 878, 1091, 1302, 1409
ApoI	RAATTY	3 cut(s)	583, 984, 1426
AspS9I	GGNCC	2 cut(s)	393, 853
AsuHPI	GGTGA	4 cut(s)	454, 811, 1084, 1508
AvaII	GGWCC	1 cut(s)	393
BarI	GAAGNNNNNNTAC	2 cut(s)	491, 523
BbsI	GAAGAC	1 cut(s)	227
BbvI	GCAGC	5 cut(s)	578, 865, 1103, 1314, 1421
BccI	CCATC	2 cut(s)	733, 1337
BciT130I	CCWGG	1 cut(s)	467
BclI	TGATCA	2 cut(s)	268, 1522
BcoDI	GTCTC	2 cut(s)	98, 535
BfaI	CTAG	4 cut(s)	159, 686, 989, 1452
BfmI	CTRYAG	1 cut(s)	1320
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	7 cut(s)	567, 696, 879, 1092, 1303, 1381, 1410
BlsI	GCNGC	7 cut(s)	568, 697, 880, 1093, 1304, 1382, 1411
BmcAI	AGTACT	1 cut(s)	641
Bme1390I	CCNGG	1 cut(s)	467
Bme18I	GGWCC	1 cut(s)	393
BmgT120I	GGNCC	2 cut(s)	393, 853
BmiI	GGNNCC	4 cut(s)	214, 395, 855, 946
BmrFI	CCNGG	1 cut(s)	467
BmrI	ACTGGG	2 cut(s)	442, 1156
BmsI	GCATC	2 cut(s)	19, 1177
BmuI	ACTGGG	2 cut(s)	442, 1156
BpiI	GAAGAC	1 cut(s)	227
BplI	GAGNNNNNCTC	2 cut(s)	626, 658
Bpu10I	CCTNAGC	1 cut(s)	677
BpuEI	CTTGAG	4 cut(s)	817, 1291, 1318, 1390
BsaI	GGTCTC	1 cut(s)	535
BsaJI	CCNNGG	5 cut(s)	465, 646, 749, 1086, 1530
BsaWI	WCCGGW	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	2 cut(s)	651, 1419
Bse1I	ACTGG	3 cut(s)	43, 437, 1162
Bse3DI	GCAATG	4 cut(s)	108, 948, 960, 1086
BseBI	CCWGG	1 cut(s)	467
BseDI	CCNNGG	5 cut(s)	465, 646, 749, 1086, 1530
BseGI	GGATG	6 cut(s)	65, 114, 419, 1065, 1192, 1348
BseLI	CCNNNNNNNGG	2 cut(s)	651, 1419
BseMI	GCAATG	4 cut(s)	108, 948, 960, 1086
BseMII	CTCAG	5 cut(s)	80, 390, 530, 691, 978
BseNI	ACTGG	3 cut(s)	43, 437, 1162
BseRI	GAGGAG	3 cut(s)	794, 1363, 1495
BseXI	GCAGC	5 cut(s)	578, 865, 1103, 1314, 1421
BseYI	CCCAGC	1 cut(s)	384
BshFI	GGCC	2 cut(s)	695, 854
BsiSI	CCGG	1 cut(s)	216
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	2 cut(s)	651, 1419
BsmAI	GTCTC	2 cut(s)	98, 535
BsmFI	GGGAC	1 cut(s)	379
BsnI	GGCC	2 cut(s)	695, 854
Bso31I	GGTCTC	1 cut(s)	535
Bsp143I	GATC	9 cut(s)	268, 445, 607, 804, 915, 1047, 1126, 1324, 1522
Bsp19I	CCATGG	1 cut(s)	1530
BspACI	CCGC	2 cut(s)	696, 1381
BspANI	GGCC	2 cut(s)	695, 854
BspCNI	CTCAG	5 cut(s)	81, 389, 531, 690, 977
BspLI	GGNNCC	4 cut(s)	214, 395, 855, 946
BspPI	GGATC	4 cut(s)	799, 910, 1055, 1121
BspTNI	GGTCTC	1 cut(s)	535
BsrDI	GCAATG	4 cut(s)	108, 948, 960, 1086
BsrI	ACTGG	3 cut(s)	43, 437, 1162
BssECI	CCNNGG	5 cut(s)	465, 646, 749, 1086, 1530
BssMI	GATC	9 cut(s)	268, 445, 607, 804, 915, 1047, 1126, 1324, 1522
BssT1I	CCWWGG	3 cut(s)	646, 749, 1530
Bst2UI	CCWGG	1 cut(s)	467
Bst4CI	ACNGT	4 cut(s)	355, 512, 973, 1072
Bst6I	CTCTTC	1 cut(s)	702
BstDEI	CTNAG	7 cut(s)	22, 89, 376, 539, 677, 964, 1115
BstDSI	CCRYGG	2 cut(s)	1086, 1530
BstF5I	GGATG	6 cut(s)	65, 114, 419, 1065, 1192, 1348
BstKTI	GATC	9 cut(s)	271, 448, 610, 807, 918, 1050, 1129, 1327, 1525
BstMAI	GTCTC	2 cut(s)	98, 535
BstMBI	GATC	9 cut(s)	268, 445, 607, 804, 915, 1047, 1126, 1324, 1522
BstMWI	GCNNNNNNNGC	2 cut(s)	163, 1299
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	465
BstSFI	CTRYAG	1 cut(s)	1320
BstV1I	GCAGC	5 cut(s)	578, 865, 1103, 1314, 1421
BstV2I	GAAGAC	1 cut(s)	227
BstX2I	RGATCY	3 cut(s)	445, 915, 1126
BstYI	RGATCY	3 cut(s)	445, 915, 1126
BsuRI	GGCC	2 cut(s)	695, 854
BtgI	CCRYGG	2 cut(s)	1086, 1530
BtsCI	GGATG	6 cut(s)	65, 114, 419, 1065, 1192, 1348
BtsI	GCAGTG	1 cut(s)	843
BtsIMutI	CAGTG	5 cut(s)	36, 384, 430, 843, 969
CaiI	CAGNNNCTG	1 cut(s)	971
Cfr13I	GGNCC	2 cut(s)	393, 853
Csp6I	GTAC	4 cut(s)	196, 640, 1165, 1267
CspCI	CAANNNNNGTGG	2 cut(s)	1068, 1103
CviQI	GTAC	4 cut(s)	196, 640, 1165, 1267
DdeI	CTNAG	7 cut(s)	22, 89, 376, 539, 677, 964, 1115
DpnI	GATC	9 cut(s)	270, 447, 609, 806, 917, 1049, 1128, 1326, 1524
DpnII	GATC	9 cut(s)	268, 445, 607, 804, 915, 1047, 1126, 1324, 1522
Eam1104I	CTCTTC	1 cut(s)	702
EarI	CTCTTC	1 cut(s)	702
Eco130I	CCWWGG	3 cut(s)	646, 749, 1530
Eco31I	GGTCTC	1 cut(s)	535
Eco47I	GGWCC	1 cut(s)	393
EcoO109I	RGGNCCY	2 cut(s)	393, 853
EcoRI	GAATTC	1 cut(s)	1426
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	3 cut(s)	646, 749, 1530
EcoT22I	ATGCAT	1 cut(s)	1192
ErhI	CCWWGG	3 cut(s)	646, 749, 1530
FalI	AAGNNNNNCTT	2 cut(s)	639, 671
FaqI	GGGAC	1 cut(s)	379
FbaI	TGATCA	2 cut(s)	268, 1522
FblI	GTMKAC	1 cut(s)	151
Fnu4HI	GCNGC	7 cut(s)	567, 696, 879, 1092, 1303, 1381, 1410
FokI	GGATG	6 cut(s)	52, 101, 426, 1072, 1199, 1355
Fsp4HI	GCNGC	7 cut(s)	567, 696, 879, 1092, 1303, 1381, 1410
FspBI	CTAG	4 cut(s)	159, 686, 989, 1452
GluI	GCNGC	7 cut(s)	567, 696, 879, 1092, 1303, 1381, 1410
GsaI	CCCAGC	1 cut(s)	388
HaeIII	GGCC	2 cut(s)	695, 854
HapII	CCGG	1 cut(s)	216
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HindIII	AAGCTT	2 cut(s)	164, 241
HinfI	GANTC	4 cut(s)	45, 91, 374, 1238
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	4 cut(s)	454, 811, 1084, 1508
Hpy166II	GTNNAC	2 cut(s)	152, 734
Hpy188I	TCNGA	5 cut(s)	14, 90, 540, 634, 1052
Hpy188III	TCNNGA	5 cut(s)	371, 686, 796, 1235, 1297
Hpy8I	GTNNAC	2 cut(s)	152, 734
Hpy99I	CGWCG	1 cut(s)	266
HpyAV	CCTTC	4 cut(s)	645, 871, 1333, 1357
HpyCH4III	ACNGT	4 cut(s)	355, 512, 973, 1072
HpyCH4IV	ACGT	1 cut(s)	485
HpyCH4V	TGCA	9 cut(s)	135, 323, 566, 836, 912, 953, 1124, 1190, 1210
HpyF10VI	GCNNNNNNNGC	2 cut(s)	163, 1299
HpyF3I	CTNAG	7 cut(s)	22, 89, 376, 539, 677, 964, 1115
HpySE526I	ACGT	1 cut(s)	485
Ksp22I	TGATCA	2 cut(s)	268, 1522
Kzo9I	GATC	9 cut(s)	268, 445, 607, 804, 915, 1047, 1126, 1324, 1522
LmnI	GCTCC	2 cut(s)	944, 1290
Lsp1109I	GCAGC	5 cut(s)	578, 865, 1103, 1314, 1421
LweI	GCATC	2 cut(s)	19, 1177
MaeI	CTAG	4 cut(s)	159, 686, 989, 1452
MaeII	ACGT	1 cut(s)	485
MaeIII	GTNAC	7 cut(s)	221, 349, 481, 549, 967, 1330, 1507
MalI	GATC	9 cut(s)	270, 447, 609, 806, 917, 1049, 1128, 1326, 1524
MboI	GATC	9 cut(s)	268, 445, 607, 804, 915, 1047, 1126, 1324, 1522
MboII	GAAGA	6 cut(s)	227, 290, 295, 301, 719, 1387
MfeI	CAATTG	1 cut(s)	307
MflI	RGATCY	3 cut(s)	445, 915, 1126
MlyI	GAGTC	3 cut(s)	100, 368, 1232
MmeI	TCCRAC	1 cut(s)	190
Mph1103I	ATGCAT	1 cut(s)	1192
MseI	TTAA	5 cut(s)	8, 827, 870, 1310, 1537
MslI	CAYNNNNRTG	2 cut(s)	56, 953
MspI	CCGG	1 cut(s)	216
MspR9I	CCNGG	1 cut(s)	467
MunI	CAATTG	1 cut(s)	307
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	2 cut(s)	163, 1299
NcoI	CCATGG	1 cut(s)	1530
NdeII	GATC	9 cut(s)	268, 445, 607, 804, 915, 1047, 1126, 1324, 1522
NlaIV	GGNNCC	4 cut(s)	214, 395, 855, 946
NmuCI	GTSAC	4 cut(s)	221, 481, 967, 1507
NsiI	ATGCAT	1 cut(s)	1192
PfeI	GAWTC	1 cut(s)	45
PkrI	GCNGC	7 cut(s)	568, 697, 880, 1093, 1304, 1382, 1411
PleI	GAGTC	3 cut(s)	99, 368, 1232
PpsI	GAGTC	3 cut(s)	99, 368, 1232
PpuMI	RGGWCCY	1 cut(s)	393
Psp5II	RGGWCCY	1 cut(s)	393
Psp6I	CCWGG	1 cut(s)	465
PspFI	CCCAGC	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	4 cut(s)	214, 395, 855, 946
PspPI	GGNCC	2 cut(s)	393, 853
PspPPI	RGGWCCY	1 cut(s)	393
PstNI	CAGNNNCTG	1 cut(s)	971
PsuI	RGATCY	3 cut(s)	445, 915, 1126
RsaI	GTAC	4 cut(s)	197, 641, 1166, 1268
RsaNI	GTAC	4 cut(s)	196, 640, 1165, 1267
RseI	CAYNNNNRTG	2 cut(s)	56, 953
SalI	GTCGAC	1 cut(s)	150
SaqAI	TTAA	5 cut(s)	8, 827, 870, 1310, 1537
SatI	GCNGC	7 cut(s)	567, 696, 879, 1092, 1303, 1381, 1410
Sau3AI	GATC	9 cut(s)	268, 445, 607, 804, 915, 1047, 1126, 1324, 1522
Sau96I	GGNCC	2 cut(s)	393, 853
ScaI	AGTACT	1 cut(s)	641
SchI	GAGTC	3 cut(s)	100, 368, 1232
ScrFI	CCNGG	1 cut(s)	467
SfaNI	GCATC	2 cut(s)	19, 1177
SfcI	CTRYAG	1 cut(s)	1320
SinI	GGWCC	1 cut(s)	393
SmiMI	CAYNNNNRTG	2 cut(s)	56, 953
SmlI	CTYRAG	4 cut(s)	796, 1270, 1297, 1369
SmoI	CTYRAG	4 cut(s)	796, 1270, 1297, 1369
SsiI	CCGC	2 cut(s)	696, 1381
SspI	AATATT	1 cut(s)	898
SspMI	CTAG	4 cut(s)	159, 686, 989, 1452
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	3 cut(s)	646, 749, 1530
TaaI	ACNGT	4 cut(s)	355, 512, 973, 1072
TaiI	ACGT	1 cut(s)	488
TaqI	TCGA	3 cut(s)	43, 151, 261
TatI	WGTACW	4 cut(s)	195, 639, 1164, 1266
TauI	GCSGC	2 cut(s)	698, 1383
TfiI	GAWTC	1 cut(s)	45
Tru1I	TTAA	5 cut(s)	8, 827, 870, 1310, 1537
Tru9I	TTAA	5 cut(s)	8, 827, 870, 1310, 1537
TscAI	CASTG	5 cut(s)	43, 384, 437, 843, 976
TseFI	GTSAC	4 cut(s)	221, 481, 967, 1507
TseI	GCWGC	5 cut(s)	566, 878, 1091, 1302, 1409
Tsp45I	GTSAC	4 cut(s)	221, 481, 967, 1507
TspDTI	ATGAA	9 cut(s)	54, 103, 158, 190, 902, 1035, 1046, 1419, 1430
TspGWI	ACGGA	2 cut(s)	1018, 1075
TspRI	CASTG	5 cut(s)	43, 384, 437, 843, 976
VpaK11BI	GGWCC	1 cut(s)	393
XapI	RAATTY	3 cut(s)	583, 984, 1426
XbaI	TCTAGA	1 cut(s)	685
XmiI	GTMKAC	1 cut(s)	151
XspI	CTAG	4 cut(s)	159, 686, 989, 1452
ZrmI	AGTACT	1 cut(s)	641
Zsp2I	ATGCAT	1 cut(s)	1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.