Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003626

Physical Location & Seq

Genomic Coordinates Reverse (-)

15614547 .. 15616408

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g12670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1413 bp

ATGGGTTTGATTCTTCTGTGCATGTCCTGGTTCTTACCCAGCTTGAGGCCTTGTGATACAAAAACATGTCATGAACCCAGAAAAATACATGAAGTTGTGTTCTTCCTTGCAATCTACTTAGTTTCTATAGGAACTGGGGGTCATAAGCCTGCCCTGGAAAGCTTCGGAGCTGACCAATTCGATGACGATCACCGTGAAGAAAGGAAGCAAAAGATGTCCTTTTTCAATTGGTGGAATTTTGGGCTTTGTTGTGGGCTTTTACTTGGGGTAACTGTGGTTGTGTATGTGCAAGACCATGTGAGTTGGGGTGTTGGTGATATTGTTCTGACTGCAGTCATGGCTGTATCACTTGCTATCTTCATAATTGGAAGGCGGAATTACCGTTATCGGAAACCAACCGGAAGCCCCTTGACACCAATGTTGCAGGTTCTTGTAGCTGCCATTGCTAAGAGAAGTCTGCCTCACCCTTCTGACCCTGCTCAATTGTATGAAATCTCCAAATCGGAAAAGGTCAATGGGAGGCTTCTGTGCCACACCGAGAAGCTCAAATTTCTTGACAAGGCGGCAATCATAAGTGCGCAAAACTTGACCGAGAAGCCAAGTCCTTGGAGACTAGTAACTGTGACCAAGGTGGAGGAGATGAAACTTGTTCTAAACTTGATCCCCATTTGGCTAGCAACTCTTCCATTTGGACTTTGTGTAGCACAAACCTCTACATTCTTCATCAAACAAGGTGCCACCATGAACAGAGAGTTTGCAAATGGTTTTGAGGTCCCCCCTGCCTCAATCTATGCAATCGCTGCCATTGGAATGATCGTCTCTGTCACATTATACGAAAAACTCCTCGTCCCGATTCTAAGAAGGACAACCGGAAACGAAAGAGGAATCAACATCCTCCAAAGGATTGGAATCGGAATGATTTTCTCCGTCGCTACGATGATAGCAGCTGCATTGGTGGAGAAGAAACGACTAGGGCTTGTCAAAATTGACCCAATAAAAGGTTCGCATTCCATGAGCGTATTGTGGTTGGCACCACAATTTTTGATCATTGGGTTTGGAGATGGGTTTACTCTTGTGGGGTTGCAGGAGTATTTTTACGACCAAGTTCCGGACTCCATGAGAAGCTTAGGCATTGCTTTATACCTCAGTGTGATCGGAGCTGGGAACTTCCTTAGCAGCCTTTTGATCACGGCCGTTGATCACATCACGGACAATGTCGGGAAGAGTTGGTTCGGGAAGGATTTGAACAGCAGTCGATTAGACAGGTTTTATTGGCTCCTGGCTTGCGTGGCTGCTGCAAATCTGTGTGTTTATGTTTTCGTGGCTCAGCGTTATTCTTACAAGAGTGTGCAGAAGGTGGCTGTGGCTGATAGCTATGAAGATGAACCGGAAAATGGAGGGCCGATCCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

471

Amino Acids

52.16

Weight (kDa)

8.82

Isoelectric Point (pI)

37.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PTR2	PF00854	2 - 406	1.2e-83	POT family
MFS_1	PF07690	33 - 392	8.1e-10	Major Facilitator Superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37900 AT2G37900 AT3G53960
fragaria_vesca	FvH4_6g12770 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570
malus_domestica	MD01G1141500.v1.1 MD04G1138500.v1.1 MD07G1205700.v1.1 MD12G1153900.v1.1 MD12G1154200.v1.1
prunus_persica	Prupe.2G241800_v2.0.a1 Prupe.6G264100_v2.0.a1
pyrus_communis	pycom04g12670 pycom07g19250 pycom12g14650
rosa_chinensis	RchiOBHm_Chr1g0368741 RchiOBHm_Chr3g0464761
rosa_laevigata	RLG00000024674 RLG00000027192
rosa_multiflora	Rmu_sc0001791.1_g000017 Rmu_sc0007114.1_g000013
rosa_roxburghii	Rroxscaffold_4G00288310 Rroxscaffold_6G00415440
rosa_rugosa	Rorug01G0344800 Rorug03G0073800 Rorug03G0073900
rosa_samantha	Rh1AG351700 Rh1BG315400 Rh3DG137900
rosa_wichuraiana	Rw3G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	579
Acc36I	ACCTGC	1 cut(s)	415
AccB1I	GGYRCC	2 cut(s)	734, 1030
AccIII	TCCGGA	1 cut(s)	1108
AciI	CCGC	2 cut(s)	373, 563
AclWI	GGATC	2 cut(s)	655, 1399
AcoI	YGGCCR	1 cut(s)	1191
AcsI	RAATTY	2 cut(s)	235, 548
AfiI	CCNNNNNNNGG	4 cut(s)	45, 998, 1108, 1394
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	2 cut(s)	226, 1246
AhlI	ACTAGT	1 cut(s)	613
AjnI	CCWGG	3 cut(s)	26, 153, 1278
AjuI	GAANNNNNNNTTGG	2 cut(s)	985, 1017
AluBI	AGCT	9 cut(s)	42, 162, 170, 437, 544, 947, 1125, 1160, 1374
AluI	AGCT	9 cut(s)	42, 162, 170, 437, 544, 947, 1125, 1160, 1374
Alw26I	GTCTC	2 cut(s)	604, 823
AlwI	GGATC	2 cut(s)	655, 1399
Aor13HI	TCCGGA	1 cut(s)	1108
AoxI	GGCC	3 cut(s)	47, 1191, 1400
ApeKI	GCWGC	7 cut(s)	437, 800, 944, 947, 1176, 1292, 1295
ApoI	RAATTY	2 cut(s)	235, 548
AspLEI	GCGC	1 cut(s)	580
AspS9I	GGNCC	2 cut(s)	772, 1400
AsuHPI	GGTGA	3 cut(s)	182, 326, 455
AsuNHI	GCTAGC	1 cut(s)	673
AvaII	GGWCC	1 cut(s)	772
BanI	GGYRCC	2 cut(s)	734, 1030
BbvI	GCAGC	7 cut(s)	424, 787, 934, 956, 1188, 1279, 1282
BccI	CCATC	1 cut(s)	1055
BceAI	ACGGC	2 cut(s)	1178, 1206
BciT130I	CCWGG	3 cut(s)	28, 155, 1280
BclI	TGATCA	3 cut(s)	1044, 1185, 1198
BcoDI	GTCTC	2 cut(s)	604, 823
BcuI	ACTAGT	1 cut(s)	613
BfaI	CTAG	3 cut(s)	614, 674, 971
BfmI	CTRYAG	2 cut(s)	126, 330
BfuAI	ACCTGC	1 cut(s)	415
BisI	GCNGC	8 cut(s)	438, 564, 801, 945, 948, 1177, 1293, 1296
BlpI	GCTNAGC	1 cut(s)	1326
BlsI	GCNGC	8 cut(s)	439, 565, 802, 946, 949, 1178, 1294, 1297
Bme1390I	CCNGG	3 cut(s)	28, 155, 1280
Bme18I	GGWCC	1 cut(s)	772
BmgT120I	GGNCC	2 cut(s)	772, 1400
BmiI	GGNNCC	4 cut(s)	736, 774, 1032, 1277
BmrFI	CCNGG	3 cut(s)	28, 155, 1280
BmrI	ACTGGG	1 cut(s)	144
BmtI	GCTAGC	1 cut(s)	677
BmuI	ACTGGG	1 cut(s)	144
BoxI	GACNNNNGTC	1 cut(s)	332
Bpu10I	CCTNAGC	2 cut(s)	1126, 1172
Bpu1102I	GCTNAGC	1 cut(s)	1326
BpuEI	CTTGAG	1 cut(s)	64
BsaBI	GATNNNNATC	2 cut(s)	186, 908
BsaJI	CCNNGG	3 cut(s)	153, 605, 627
BsaWI	WCCGGW	4 cut(s)	398, 869, 1108, 1387
Bsc4I	CCNNNNNNNGG	4 cut(s)	45, 998, 1108, 1394
Bse1I	ACTGG	1 cut(s)	139
Bse3DI	GCAATG	2 cut(s)	441, 1131
Bse8I	GATNNNNATC	2 cut(s)	186, 908
BseAI	TCCGGA	1 cut(s)	1108
BseBI	CCWGG	3 cut(s)	28, 155, 1280
BseDI	CCNNGG	3 cut(s)	153, 605, 627
BseGI	GGATG	1 cut(s)	891
BseJI	GATNNNNATC	2 cut(s)	186, 908
BseLI	CCNNNNNNNGG	4 cut(s)	45, 998, 1108, 1394
BseMI	GCAATG	2 cut(s)	441, 1131
BseMII	CTCAG	2 cut(s)	1159, 1340
BseNI	ACTGG	1 cut(s)	139
BseRI	GAGGAG	2 cut(s)	650, 833
BseX3I	CGGCCG	1 cut(s)	1191
BseXI	GCAGC	7 cut(s)	424, 787, 934, 956, 1188, 1279, 1282
BseYI	CCCAGC	2 cut(s)	38, 1160
BsgI	GTGCAG	1 cut(s)	1370
Bsh1285I	CGRYCG	1 cut(s)	1194
BshFI	GGCC	3 cut(s)	49, 1193, 1402
BshNI	GGYRCC	2 cut(s)	734, 1030
BsiEI	CGRYCG	1 cut(s)	1194
BsiSI	CCGG	4 cut(s)	399, 870, 1109, 1388
BslFI	GGGAC	2 cut(s)	758, 833
BslI	CCNNNNNNNGG	4 cut(s)	45, 998, 1108, 1394
BsmAI	GTCTC	2 cut(s)	604, 823
BsmBI	CGTCTC	1 cut(s)	823
BsmFI	GGGAC	2 cut(s)	758, 833
BsmI	GAATGC	1 cut(s)	1006
BsnI	GGCC	3 cut(s)	49, 1193, 1402
Bsp13I	TCCGGA	1 cut(s)	1108
Bsp143I	GATC	8 cut(s)	187, 660, 813, 1044, 1152, 1185, 1198, 1404
Bsp1720I	GCTNAGC	1 cut(s)	1326
BspACI	CCGC	2 cut(s)	373, 563
BspANI	GGCC	3 cut(s)	49, 1193, 1402
BspCNI	CTCAG	2 cut(s)	1158, 1339
BspEI	TCCGGA	1 cut(s)	1108
BspHI	TCATGA	1 cut(s)	70
BspLI	GGNNCC	4 cut(s)	736, 774, 1032, 1277
BspMAI	CTGCAG	1 cut(s)	334
BspMI	ACCTGC	1 cut(s)	415
BspOI	GCTAGC	1 cut(s)	677
BspPI	GGATC	2 cut(s)	655, 1399
BspT107I	GGYRCC	2 cut(s)	734, 1030
BsrDI	GCAATG	2 cut(s)	441, 1131
BsrI	ACTGG	1 cut(s)	139
BssECI	CCNNGG	3 cut(s)	153, 605, 627
BssMI	GATC	8 cut(s)	187, 660, 813, 1044, 1152, 1185, 1198, 1404
BssT1I	CCWWGG	2 cut(s)	605, 627
Bst2UI	CCWGG	3 cut(s)	28, 155, 1280
Bst4CI	ACNGT	4 cut(s)	194, 274, 383, 622
Bst6I	CTCTTC	2 cut(s)	687, 1217
BstAPI	GCANNNNNTGC	1 cut(s)	800
BstC8I	GCNNGC	3 cut(s)	150, 675, 1285
BstDEI	CTNAG	7 cut(s)	118, 447, 857, 1126, 1145, 1172, 1326
BstF5I	GGATG	1 cut(s)	891
BstHHI	GCGC	1 cut(s)	580
BstKTI	GATC	8 cut(s)	190, 663, 816, 1047, 1155, 1188, 1201, 1407
BstMAI	GTCTC	2 cut(s)	604, 823
BstMBI	GATC	8 cut(s)	187, 660, 813, 1044, 1152, 1185, 1198, 1404
BstMCI	CGRYCG	1 cut(s)	1194
BstMWI	GCNNNNNNNGC	4 cut(s)	338, 443, 800, 1289
BstNI	CCWGG	3 cut(s)	28, 155, 1280
BstNSI	RCATGY	2 cut(s)	25, 69
BstPAI	GACNNNNGTC	1 cut(s)	332
BstSCI	CCNGG	3 cut(s)	26, 153, 1278
BstSFI	CTRYAG	2 cut(s)	126, 330
BstV1I	GCAGC	7 cut(s)	424, 787, 934, 956, 1188, 1279, 1282
BstXI	CCANNNNNNTGG	2 cut(s)	606, 905
BstZI	CGGCCG	1 cut(s)	1191
BsuRI	GGCC	3 cut(s)	49, 1193, 1402
BtsCI	GGATG	1 cut(s)	891
BtsIMutI	CAGTG	1 cut(s)	1153
BveI	ACCTGC	1 cut(s)	415
Cac8I	GCNNGC	3 cut(s)	150, 675, 1285
CciI	TCATGA	1 cut(s)	70
CfoI	GCGC	1 cut(s)	580
Cfr13I	GGNCC	2 cut(s)	772, 1400
CspCI	CAANNNNNGTGG	2 cut(s)	1023, 1058
DdeI	CTNAG	7 cut(s)	118, 447, 857, 1126, 1145, 1172, 1326
DpnI	GATC	8 cut(s)	189, 662, 815, 1046, 1154, 1187, 1200, 1406
DpnII	GATC	8 cut(s)	187, 660, 813, 1044, 1152, 1185, 1198, 1404
EaeI	YGGCCR	1 cut(s)	1191
EagI	CGGCCG	1 cut(s)	1191
Eam1104I	CTCTTC	2 cut(s)	687, 1217
EarI	CTCTTC	2 cut(s)	687, 1217
EciI	GGCGGA	1 cut(s)	388
EclXI	CGGCCG	1 cut(s)	1191
Eco130I	CCWWGG	2 cut(s)	605, 627
Eco147I	AGGCCT	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	772
Eco52I	CGGCCG	1 cut(s)	1191
EcoO109I	RGGNCCY	1 cut(s)	772
EcoRII	CCWGG	3 cut(s)	26, 153, 1278
EcoT14I	CCWWGG	2 cut(s)	605, 627
ErhI	CCWWGG	2 cut(s)	605, 627
Esp3I	CGTCTC	1 cut(s)	823
FalI	AAGNNNNNCTT	2 cut(s)	203, 235
FaqI	GGGAC	2 cut(s)	758, 833
FbaI	TGATCA	3 cut(s)	1044, 1185, 1198
Fnu4HI	GCNGC	8 cut(s)	438, 564, 801, 945, 948, 1177, 1293, 1296
FokI	GGATG	1 cut(s)	878
Fsp4HI	GCNGC	8 cut(s)	438, 564, 801, 945, 948, 1177, 1293, 1296
FspBI	CTAG	3 cut(s)	614, 674, 971
FspI	TGCGCA	1 cut(s)	579
GlaI	GCGC	1 cut(s)	579
GluI	GCNGC	8 cut(s)	438, 564, 801, 945, 948, 1177, 1293, 1296
GsaI	CCCAGC	2 cut(s)	42, 1164
HaeIII	GGCC	3 cut(s)	49, 1193, 1402
HapII	CCGG	4 cut(s)	399, 870, 1109, 1388
HhaI	GCGC	1 cut(s)	580
Hin6I	GCGC	1 cut(s)	578
HinP1I	GCGC	1 cut(s)	578
HindIII	AAGCTT	2 cut(s)	160, 1123
HinfI	GANTC	5 cut(s)	10, 853, 885, 909, 1112
HpaII	CCGG	4 cut(s)	399, 870, 1109, 1388
HphI	GGTGA	3 cut(s)	182, 326, 455
Hpy166II	GTNNAC	1 cut(s)	1068
Hpy188I	TCNGA	7 cut(s)	167, 327, 390, 472, 505, 914, 1157
Hpy188III	TCNNGA	6 cut(s)	71, 554, 850, 1109, 1219, 1234
Hpy8I	GTNNAC	1 cut(s)	1068
Hpy99I	CGWCG	1 cut(s)	932
HpyAV	CCTTC	5 cut(s)	363, 477, 855, 1231, 1348
HpyCH4III	ACNGT	4 cut(s)	194, 274, 383, 622
HpyF10VI	GCNNNNNNNGC	4 cut(s)	338, 443, 800, 1289
HpyF3I	CTNAG	7 cut(s)	118, 447, 857, 1126, 1145, 1172, 1326
HspAI	GCGC	1 cut(s)	578
Kpn2I	TCCGGA	1 cut(s)	1108
Ksp22I	TGATCA	3 cut(s)	1044, 1185, 1198
Kzo9I	GATC	8 cut(s)	187, 660, 813, 1044, 1152, 1185, 1198, 1404
LmnI	GCTCC	3 cut(s)	167, 1157, 1281
Lsp1109I	GCAGC	7 cut(s)	424, 787, 934, 956, 1188, 1279, 1282
MaeI	CTAG	3 cut(s)	614, 674, 971
MaeIII	GTNAC	4 cut(s)	268, 616, 622, 823
MalI	GATC	8 cut(s)	189, 662, 815, 1046, 1154, 1187, 1200, 1406
MboI	GATC	8 cut(s)	187, 660, 813, 1044, 1152, 1185, 1198, 1404
MboII	GAAGA	9 cut(s)	5, 94, 209, 349, 674, 712, 973, 1234, 1391
MfeI	CAATTG	2 cut(s)	226, 482
MluCI	AATT	9 cut(s)	176, 226, 235, 363, 376, 482, 548, 984, 1037
MlyI	GAGTC	1 cut(s)	1106
MroI	TCCGGA	1 cut(s)	1108
MslI	CAYNNNNRTG	1 cut(s)	809
MspA1I	CMGCKG	1 cut(s)	947
MspI	CCGG	4 cut(s)	399, 870, 1109, 1388
MspR9I	CCNGG	3 cut(s)	28, 155, 1280
MunI	CAATTG	2 cut(s)	226, 482
Mva1269I	GAATGC	1 cut(s)	1006
MvaI	CCWGG	3 cut(s)	28, 155, 1280
MwoI	GCNNNNNNNGC	4 cut(s)	338, 443, 800, 1289
NdeII	GATC	8 cut(s)	187, 660, 813, 1044, 1152, 1185, 1198, 1404
NheI	GCTAGC	1 cut(s)	673
NlaIV	GGNNCC	4 cut(s)	736, 774, 1032, 1277
NmuCI	GTSAC	2 cut(s)	622, 823
NsbI	TGCGCA	1 cut(s)	579
NspI	RCATGY	2 cut(s)	25, 69
PagI	TCATGA	1 cut(s)	70
PceI	AGGCCT	1 cut(s)	49
PciI	ACATGT	1 cut(s)	65
PctI	GAATGC	1 cut(s)	1006
PfeI	GAWTC	4 cut(s)	10, 853, 885, 909
PflFI	GACNNNGTC	1 cut(s)	1214
PkrI	GCNGC	8 cut(s)	439, 565, 802, 946, 949, 1178, 1294, 1297
PleI	GAGTC	1 cut(s)	1106
PpsI	GAGTC	1 cut(s)	1106
PpuMI	RGGWCCY	1 cut(s)	772
PscI	ACATGT	1 cut(s)	65
PshAI	GACNNNNGTC	1 cut(s)	332
Psp5II	RGGWCCY	1 cut(s)	772
Psp6I	CCWGG	3 cut(s)	26, 153, 1278
PspFI	CCCAGC	2 cut(s)	38, 1160
PspGI	CCWGG	3 cut(s)	26, 153, 1278
PspN4I	GGNNCC	4 cut(s)	736, 774, 1032, 1277
PspPI	GGNCC	2 cut(s)	772, 1400
PspPPI	RGGWCCY	1 cut(s)	772
PstI	CTGCAG	1 cut(s)	334
PsyI	GACNNNGTC	1 cut(s)	1214
PvuII	CAGCTG	1 cut(s)	947
RseI	CAYNNNNRTG	1 cut(s)	809
SatI	GCNGC	8 cut(s)	438, 564, 801, 945, 948, 1177, 1293, 1296
Sau3AI	GATC	8 cut(s)	187, 660, 813, 1044, 1152, 1185, 1198, 1404
Sau96I	GGNCC	2 cut(s)	772, 1400
SchI	GAGTC	1 cut(s)	1106
ScrFI	CCNGG	3 cut(s)	28, 155, 1280
SfcI	CTRYAG	2 cut(s)	126, 330
SinI	GGWCC	1 cut(s)	772
SmiMI	CAYNNNNRTG	1 cut(s)	809
SmlI	CTYRAG	1 cut(s)	43
SmoI	CTYRAG	1 cut(s)	43
SpeI	ACTAGT	1 cut(s)	613
Sse9I	AATT	9 cut(s)	176, 226, 235, 363, 376, 482, 548, 984, 1037
SseBI	AGGCCT	1 cut(s)	49
SsiI	CCGC	2 cut(s)	373, 563
SspMI	CTAG	3 cut(s)	614, 674, 971
StuI	AGGCCT	1 cut(s)	49
StyD4I	CCNGG	3 cut(s)	26, 153, 1278
StyI	CCWWGG	2 cut(s)	605, 627
TaaI	ACNGT	4 cut(s)	194, 274, 383, 622
TaqI	TCGA	2 cut(s)	180, 1255
TaqII	GACCGA	1 cut(s)	605
TasI	AATT	9 cut(s)	176, 226, 235, 363, 376, 482, 548, 984, 1037
TauI	GCSGC	1 cut(s)	566
TfiI	GAWTC	4 cut(s)	10, 853, 885, 909
TscAI	CASTG	1 cut(s)	1153
TseFI	GTSAC	2 cut(s)	622, 823
TseI	GCWGC	7 cut(s)	437, 800, 944, 947, 1176, 1292, 1295
Tsp45I	GTSAC	2 cut(s)	622, 823
TspDTI	ATGAA	9 cut(s)	87, 105, 349, 504, 656, 712, 758, 1392, 1398
TspGWI	ACGGA	2 cut(s)	916, 1223
TspRI	CASTG	1 cut(s)	1153
Tth111I	GACNNNGTC	1 cut(s)	1214
VpaK11BI	GGWCC	1 cut(s)	772
XapI	RAATTY	2 cut(s)	235, 548
XceI	RCATGY	2 cut(s)	25, 69
XspI	CTAG	3 cut(s)	614, 674, 971

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.