RLG00000024674

Protein NRT1 PTR FAMILY

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
38090567 .. 38094376
3810 bp
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UTR
Exon/CDS
Intron
RLM00000024674

Sequence Viewer

Length: 1776 bp
ATGGAAGAGAGAAAGGGATCAGCAAAATCGAACAAGGTGGCAGCTGAAAATCAGGAGAAATGGGTTTATGATTCTTCTGTGGATCATAAAGGAAATGTTCCTCTCCGAGCTTCAACTGGTGTTTGGAAAGCCTCTCTCTTTATTGTTGCAATTGAGTTCAGTGAGAGGCTGAGTTACTTTGGAATAGCAACCAGTTTAATTATTTACCTGACCAAAGTAATTCATGAAGACCTCAAGAGTGCAGCAAAGAGTGTCAACTATTGGTCTGGTGTTACCACATTGATTCCATTCTTTGGAGGCTTCATAGCTGATGCTTATTTGGGTCGCTTCTCAACTGTTCTGGTCTCATCCATCATTTACCTTCTGGGTTTGATTCTTCTATCCATGTCCTGGTTTGTACCAAGCCTAAAGCCTTGTAACACACATCCATGTCTTGAACCAAGAAAAATCCATGAAGTGGTGTTCTTCCTAGCCATATACATGATCTCCATAGGAACTGGAGGCCATAAACCCTCTTTGGAGAGCTTTGGAGCTGACCAATTTGATGATGATCACACTGAAGAAAGAAAGCAAAAGATGTCCTACTTCAATTGGTGGAACTTTGGGCTTTGCTGTGGTCTTTTGCTTGGGGTGACTGTGGTTGTCTATGTACAAGACCATGTAAGTTGGGGTGTCGCAGATATAGTTCTCATGGCAGTCATGGGTACCTCGCTGGTTATCTTCATTATTGGGAGGCCGTTTTACCGCTATCGAAGACCTACAGGGAGCCCCCTGACACCAATGCTGCAGGTTCTTGTAGCAGCCATTGCGAAGAGAAAGCTGCCATATCCTTCTGATCCTGCTCAGTTGTATGAAATTTCCCAGTCGGAGAAGGTCCGTGGGAGGCTTTTGTGCCACACCAACAAGCTCAAATTTCTTGACAAGGCAGCCATCATAAGCACAGAAAATTCAGCTGAGAAGCAAAATCCTTGGACTCTTGCAACAGTGACAAAGGTCGAGGAGATGAAACTAGTCCTCAACATTATCCCCATTTGGCTAGCCACCCTACCATTTGGAATGTGTGTAGCACAAGCCTCTACATTCTTCATCAAACAAGGTGTCTCCATGAACCGAAGCATCGCCAACGGTTTCGAGATCCCCCCTGCCTCAATCTACTCTCTCGCAGCCATCGGAATGATCATATCCGTCACGTTCTACGAGAAAATCCTAGTCCCCGTCATGCGAAGAACAACTGGAAACGAGAGGGGAATCAACATTCTCCAGAGAATCGGAATTGGAATGCTCTTCTTAATCGGCACAATGGTAGCAGCTGCCTTGGTGGAGAAGAAAAGACTAGGGATTGTTGAGAAAGACCCTTTAAAGAGCTCACGTTCCATGAGTGTGTTCTGGTTAGCACCCCAGTTTGTGATAATTGGATTTGGAGATGGGTTTACTCTTGTAGGTCTGCAGGAGTATTTCTACGACCAAGTCCCGGACACCATGAGGAGCTTGGGAATTGCGTTTTACCTTGGTGTAATTGGAGCTGGAAATTTTCTCAGTAGCCTCTTGATCACGGCCATTGATCACATCACAGAGAAAAGGGGGGAGAGTTGGTTTGGTAAGGATTTGAATAGTAGTCGTTTGGACAAGTTTTACTGGCTATTGGCTTGTATGGCTGCAGCAAATTTGTGTGTTTATGTGTTTTTGGCTCGGCGTTACTCTTACAAGAATGTGCAGAAGGTAGCTGTGGTCGACTGCTATGAAGGTGAAGAGGAAAAGGGAGGTTCATTGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

592

Amino Acids

65.87

Weight (kDa)

8.95

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MFS_1 PF07690 58 - 513 2.2e-09 Major Facilitator Superfamily
PTR2 PF00854 110 - 526 5.1e-88 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 778
Acc65I GGTACC 1 cut(s) 704
AccB1I GGYRCC 1 cut(s) 704
AccB7I CCANNNNNTGG 3 cut(s) 293, 390, 457
AccI GTMKAC 1 cut(s) 1731
AciI CCGC 1 cut(s) 745
AclWI GGATC 4 cut(s) 25, 90, 830, 1129
AcoI YGGCCR 1 cut(s) 1554
AcsI RAATTY 5 cut(s) 855, 911, 946, 1528, 1663
AcuI CTGAAG 1 cut(s) 579
AfaI GTAC 3 cut(s) 399, 651, 706
AfiI CCNNNNNNNGG 4 cut(s) 293, 390, 457, 1471
AgsI TTSAA 4 cut(s) 114, 437, 589, 1609
AhlI ACTAGT 1 cut(s) 1009
AjnI CCWGG 1 cut(s) 389
Alw21I GWGCWC 1 cut(s) 1367
Alw26I GTCTC 2 cut(s) 349, 1105
AlwI GGATC 4 cut(s) 25, 90, 830, 1129
AoxI GGCC 3 cut(s) 502, 734, 1554
ApoI RAATTY 5 cut(s) 855, 911, 946, 1528, 1663
ArsI GACNNNNNNTTYG 2 cut(s) 1083, 1115
Asp718I GGTACC 1 cut(s) 704
AspS9I GGNCC 1 cut(s) 874
AsuC2I CCSGG 1 cut(s) 1472
AsuHPI GGTGA 2 cut(s) 643, 1757
AsuNHI GCTAGC 1 cut(s) 1036
AvaII GGWCC 1 cut(s) 874
BanI GGYRCC 1 cut(s) 704
BanII GRGCYC 2 cut(s) 770, 1367
BbsI GAAGAC 2 cut(s) 234, 760
Bbv12I GWGCWC 1 cut(s) 1367
BccI CCATC 4 cut(s) 359, 938, 1175, 1418
BceAI ACGGC 2 cut(s) 721, 1569
BciT130I CCWGG 1 cut(s) 391
BclI TGATCA 4 cut(s) 550, 1176, 1548, 1561
BcnI CCSGG 1 cut(s) 1472
BcoDI GTCTC 2 cut(s) 349, 1105
BcuI ACTAGT 1 cut(s) 1009
BfaI CTAG 5 cut(s) 470, 1010, 1037, 1208, 1334
BfmI CTRYAG 4 cut(s) 759, 785, 1445, 1656
BfuAI ACCTGC 1 cut(s) 778
Bme1390I CCNGG 2 cut(s) 391, 1472
Bme18I GGWCC 1 cut(s) 874
BmgT120I GGNCC 1 cut(s) 874
BmiI GGNNCC 2 cut(s) 706, 767
BmrFI CCNGG 2 cut(s) 391, 1472
BmrI ACTGGG 2 cut(s) 856, 1393
BmsI GCATC 2 cut(s) 301, 1125
BmtI GCTAGC 1 cut(s) 1040
BmuI ACTGGG 2 cut(s) 856, 1393
BoxI GACNNNNGTC 1 cut(s) 992
BpiI GAAGAC 2 cut(s) 234, 760
BpmI CTGGAG 2 cut(s) 519, 1244
BpuEI CTTGAG 1 cut(s) 218
BpuMI CCSGG 1 cut(s) 1472
BsaBI GATNNNNATC 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 349
BsaJI CCNNGG 4 cut(s) 877, 968, 1314, 1507
BsaXI ACNNNNNCTCC 4 cut(s) 470, 500, 1577, 1607
Bsc4I CCNNNNNNNGG 4 cut(s) 293, 390, 457, 1471
Bse1I ACTGG 7 cut(s) 121, 192, 502, 862, 1237, 1399, 1640
Bse3DI GCAATG 1 cut(s) 804
Bse8I GATNNNNATC 1 cut(s) 549
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 4 cut(s) 877, 968, 1314, 1507
BseGI GGATG 2 cut(s) 347, 424
BseJI GATNNNNATC 1 cut(s) 549
BseLI CCNNNNNNNGG 4 cut(s) 293, 390, 457, 1471
BseMI GCAATG 1 cut(s) 804
BseMII CTCAG 4 cut(s) 161, 857, 945, 1549
BseNI ACTGG 7 cut(s) 121, 192, 502, 862, 1237, 1399, 1640
BseRI GAGGAG 2 cut(s) 1013, 1498
BsgI GTGCAG 2 cut(s) 261, 1733
BshFI GGCC 3 cut(s) 504, 736, 1556
BshNI GGYRCC 1 cut(s) 704
BsiHKAI GWGCWC 1 cut(s) 1367
BsiSI CCGG 1 cut(s) 1472
BslFI GGGAC 2 cut(s) 1196, 1454
BslI CCNNNNNNNGG 4 cut(s) 293, 390, 457, 1471
BsmAI GTCTC 2 cut(s) 349, 1105
BsmFI GGGAC 2 cut(s) 1196, 1454
BsmI GAATGC 1 cut(s) 1284
BsnI GGCC 3 cut(s) 504, 736, 1556
Bso31I GGTCTC 1 cut(s) 349
Bsp1286I GDGCHC 2 cut(s) 770, 1367
Bsp1407I TGTACA 1 cut(s) 649
Bsp143I GATC 9 cut(s) 17, 82, 483, 550, 835, 1134, 1176, 1548, 1561
BspACI CCGC 1 cut(s) 745
BspANI GGCC 3 cut(s) 504, 736, 1556
BspCNI CTCAG 4 cut(s) 162, 856, 946, 1548
BspHI TCATGA 1 cut(s) 223
BspLI GGNNCC 2 cut(s) 706, 767
BspMAI CTGCAG 3 cut(s) 789, 1449, 1660
BspMI ACCTGC 1 cut(s) 778
BspOI GCTAGC 1 cut(s) 1040
BspPI GGATC 4 cut(s) 25, 90, 830, 1129
BspQI GCTCTTC 1 cut(s) 1289
BspT107I GGYRCC 1 cut(s) 704
BspTNI GGTCTC 1 cut(s) 349
BsrDI GCAATG 1 cut(s) 804
BsrGI TGTACA 1 cut(s) 649
BsrI ACTGG 7 cut(s) 121, 192, 502, 862, 1237, 1399, 1640
BssECI CCNNGG 4 cut(s) 877, 968, 1314, 1507
BssMI GATC 9 cut(s) 17, 82, 483, 550, 835, 1134, 1176, 1548, 1561
BssT1I CCWWGG 3 cut(s) 968, 1314, 1507
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 4 cut(s) 337, 637, 985, 1127
Bst6I CTCTTC 3 cut(s) 806, 1289, 1743
BstAPI GCANNNNNTGC 1 cut(s) 806
BstAUI TGTACA 1 cut(s) 649
BstC8I GCNNGC 1 cut(s) 1038
BstDEI CTNAG 4 cut(s) 170, 843, 954, 1535
BstDSI CCRYGG 1 cut(s) 877
BstF5I GGATG 2 cut(s) 347, 424
BstKTI GATC 9 cut(s) 20, 85, 486, 553, 838, 1137, 1179, 1551, 1564
BstMAI GTCTC 2 cut(s) 349, 1105
BstMBI GATC 9 cut(s) 17, 82, 483, 550, 835, 1134, 1176, 1548, 1561
BstMWI GCNNNNNNNGC 2 cut(s) 806, 1652
BstNI CCWGG 1 cut(s) 391
BstPAI GACNNNNGTC 1 cut(s) 992
BstSCI CCNGG 2 cut(s) 389, 1470
BstSFI CTRYAG 4 cut(s) 759, 785, 1445, 1656
BstV2I GAAGAC 2 cut(s) 234, 760
BstX2I RGATCY 1 cut(s) 1134
BstYI RGATCY 1 cut(s) 1134
BsuRI GGCC 3 cut(s) 504, 736, 1556
BtgI CCRYGG 1 cut(s) 877
BtgZI GCGATG 1 cut(s) 1102
BtsCI GGATG 2 cut(s) 347, 424
BtsIMutI CAGTG 3 cut(s) 166, 555, 990
BveI ACCTGC 1 cut(s) 778
Cac8I GCNNGC 1 cut(s) 1038
CciI TCATGA 1 cut(s) 223
Cfr13I GGNCC 1 cut(s) 874
Csp6I GTAC 3 cut(s) 398, 650, 705
CviQI GTAC 3 cut(s) 398, 650, 705
DdeI CTNAG 4 cut(s) 170, 843, 954, 1535
DpnI GATC 9 cut(s) 19, 84, 485, 552, 837, 1136, 1178, 1550, 1563
DpnII GATC 9 cut(s) 17, 82, 483, 550, 835, 1134, 1176, 1548, 1561
DraI TTTAAA 1 cut(s) 1359
EaeI YGGCCR 1 cut(s) 1554
Eam1104I CTCTTC 3 cut(s) 806, 1289, 1743
EarI CTCTTC 3 cut(s) 806, 1289, 1743
Ecl136II GAGCTC 1 cut(s) 1365
Eco130I CCWWGG 3 cut(s) 968, 1314, 1507
Eco24I GRGCYC 2 cut(s) 770, 1367
Eco31I GGTCTC 1 cut(s) 349
Eco47I GGWCC 1 cut(s) 874
Eco53kI GAGCTC 1 cut(s) 1365
Eco57I CTGAAG 1 cut(s) 579
EcoICRI GAGCTC 1 cut(s) 1365
EcoRII CCWGG 1 cut(s) 389
EcoT14I CCWWGG 3 cut(s) 968, 1314, 1507
EcoT38I GRGCYC 2 cut(s) 770, 1367
ErhI CCWWGG 3 cut(s) 968, 1314, 1507
FaqI GGGAC 2 cut(s) 1196, 1454
FbaI TGATCA 4 cut(s) 550, 1176, 1548, 1561
FblI GTMKAC 1 cut(s) 1731
FokI GGATG 2 cut(s) 334, 411
FriOI GRGCYC 2 cut(s) 770, 1367
FspBI CTAG 5 cut(s) 470, 1010, 1037, 1208, 1334
GsuI CTGGAG 2 cut(s) 519, 1244
HaeIII GGCC 3 cut(s) 504, 736, 1556
HapII CCGG 1 cut(s) 1472
HincII GTYRAC 2 cut(s) 256, 1732
HindII GTYRAC 2 cut(s) 256, 1732
HinfI GANTC 6 cut(s) 71, 283, 373, 973, 1248, 1266
HpaII CCGG 1 cut(s) 1472
HphI GGTGA 2 cut(s) 643, 1757
Hpy166II GTNNAC 3 cut(s) 256, 1431, 1732
Hpy188I TCNGA 5 cut(s) 107, 835, 868, 1172, 1271
Hpy188III TCNNGA 8 cut(s) 53, 224, 235, 434, 917, 1132, 1261, 1546
Hpy8I GTNNAC 3 cut(s) 256, 1431, 1732
HpyAV CCTTC 5 cut(s) 371, 840, 865, 1711, 1736
HpyCH4III ACNGT 4 cut(s) 337, 637, 985, 1127
HpyCH4IV ACGT 2 cut(s) 1190, 1369
HpyCH4V TGCA 7 cut(s) 149, 242, 787, 980, 1447, 1658, 1714
HpyF10VI GCNNNNNNNGC 2 cut(s) 806, 1652
HpyF3I CTNAG 4 cut(s) 170, 843, 954, 1535
HpySE526I ACGT 2 cut(s) 1190, 1369
KpnI GGTACC 1 cut(s) 708
Ksp22I TGATCA 4 cut(s) 550, 1176, 1548, 1561
Kzo9I GATC 9 cut(s) 17, 82, 483, 550, 835, 1134, 1176, 1548, 1561
LguI GCTCTTC 1 cut(s) 1289
LmnI GCTCC 4 cut(s) 530, 765, 1485, 1520
LweI GCATC 2 cut(s) 301, 1125
MaeI CTAG 5 cut(s) 470, 1010, 1037, 1208, 1334
MaeII ACGT 2 cut(s) 1190, 1369
MaeIII GTNAC 7 cut(s) 173, 271, 416, 631, 985, 1186, 1694
MalI GATC 9 cut(s) 19, 84, 485, 552, 837, 1136, 1178, 1550, 1563
MboI GATC 9 cut(s) 17, 82, 483, 550, 835, 1134, 1176, 1548, 1561
MfeI CAATTG 2 cut(s) 150, 589
MflI RGATCY 1 cut(s) 1134
MhlI GDGCHC 2 cut(s) 770, 1367
MlyI GAGTC 1 cut(s) 967
MmeI TCCRAC 1 cut(s) 846
MseI TTAA 3 cut(s) 197, 1289, 1358
MslI CAYNNNNRTG 4 cut(s) 427, 479, 1172, 1379
MspA1I CMGCKG 3 cut(s) 44, 953, 1310
MspI CCGG 1 cut(s) 1472
MspR9I CCNGG 2 cut(s) 391, 1472
MunI CAATTG 2 cut(s) 150, 589
Mva1269I GAATGC 1 cut(s) 1284
MvaI CCWGG 1 cut(s) 391
MwoI GCNNNNNNNGC 2 cut(s) 806, 1652
NciI CCSGG 1 cut(s) 1472
NdeII GATC 9 cut(s) 17, 82, 483, 550, 835, 1134, 1176, 1548, 1561
NheI GCTAGC 1 cut(s) 1036
NlaIV GGNNCC 2 cut(s) 706, 767
NmeAIII GCCGAG 1 cut(s) 1669
NmuCI GTSAC 3 cut(s) 631, 985, 1186
PagI TCATGA 1 cut(s) 223
PciSI GCTCTTC 1 cut(s) 1289
PctI GAATGC 1 cut(s) 1284
PfeI GAWTC 5 cut(s) 71, 283, 373, 1248, 1266
PflFI GACNNNGTC 1 cut(s) 1466
PflMI CCANNNNNTGG 3 cut(s) 293, 390, 457
PfoI TCCNGGA 1 cut(s) 1470
PleI GAGTC 1 cut(s) 967
PpsI GAGTC 1 cut(s) 967
PshAI GACNNNNGTC 1 cut(s) 992
Psp124BI GAGCTC 1 cut(s) 1367
Psp6I CCWGG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 2 cut(s) 706, 767
PspPI GGNCC 1 cut(s) 874
PstI CTGCAG 3 cut(s) 789, 1449, 1660
PsuI RGATCY 1 cut(s) 1134
PsyI GACNNNGTC 1 cut(s) 1466
PvuII CAGCTG 3 cut(s) 44, 953, 1310
RsaI GTAC 3 cut(s) 399, 651, 706
RsaNI GTAC 3 cut(s) 398, 650, 705
RseI CAYNNNNRTG 4 cut(s) 427, 479, 1172, 1379
SacI GAGCTC 1 cut(s) 1367
SalI GTCGAC 1 cut(s) 1730
SapI GCTCTTC 1 cut(s) 1289
SaqAI TTAA 3 cut(s) 197, 1289, 1358
Sau3AI GATC 9 cut(s) 17, 82, 483, 550, 835, 1134, 1176, 1548, 1561
Sau96I GGNCC 1 cut(s) 874
SchI GAGTC 1 cut(s) 967
ScrFI CCNGG 2 cut(s) 391, 1472
SduI GDGCHC 2 cut(s) 770, 1367
SfaNI GCATC 2 cut(s) 301, 1125
SfcI CTRYAG 4 cut(s) 759, 785, 1445, 1656
SinI GGWCC 1 cut(s) 874
SmiMI CAYNNNNRTG 4 cut(s) 427, 479, 1172, 1379
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
SpeI ACTAGT 1 cut(s) 1009
SsiI CCGC 1 cut(s) 745
SspMI CTAG 5 cut(s) 470, 1010, 1037, 1208, 1334
SstI GAGCTC 1 cut(s) 1367
StyD4I CCNGG 2 cut(s) 389, 1470
StyI CCWWGG 3 cut(s) 968, 1314, 1507
TaaI ACNGT 4 cut(s) 337, 637, 985, 1127
TaiI ACGT 2 cut(s) 1193, 1372
TaqI TCGA 5 cut(s) 29, 751, 996, 1131, 1731
TatI WGTACW 1 cut(s) 649
TfiI GAWTC 5 cut(s) 71, 283, 373, 1248, 1266
Tru1I TTAA 3 cut(s) 197, 1289, 1358
Tru9I TTAA 3 cut(s) 197, 1289, 1358
TscAI CASTG 3 cut(s) 166, 562, 990
TseFI GTSAC 3 cut(s) 631, 985, 1186
Tsp45I GTSAC 3 cut(s) 631, 985, 1186
TspGWI ACGGA 2 cut(s) 866, 1174
TspRI CASTG 3 cut(s) 166, 562, 990
Tth111I GACNNNGTC 1 cut(s) 1466
Van91I CCANNNNNTGG 3 cut(s) 293, 390, 457
VpaK11BI GGWCC 1 cut(s) 874
XapI RAATTY 5 cut(s) 855, 911, 946, 1528, 1663
XcmI CCANNNNNNNNNTGG 1 cut(s) 1486
XmiI GTMKAC 1 cut(s) 1731
XspI CTAG 5 cut(s) 470, 1010, 1037, 1208, 1334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.