Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003626

Physical Location & Seq

Genomic Coordinates Forward (+)

11756983 .. 11759425

Gene Structure 2443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG137900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGATTCCATTCTTTGGAGGCTTCATAGCTGATGCTTATTTGGGTCGCTTCTCAACTGTTCTGGTCTCATCCATCATTTACCTTCTGGGTTTGATTCTTCTATCCATGTCCTGGTTTGTACCAACCCTAAGGCCTTGTGACACACATCCATGTCTTGAACCAAGAAAAATCCATGAAGTGGTGTTCTTCCTAGCCATATACATGATCTCCATAGGAACTGGAGGCCATAAACCCTCTTTGGAGAGCTTTGGAGCTGACCAATTTGATGATGATCACACTGAAGAAAGAAAGCAAAAGATGTCCTACTTCAATTGGTGGAACTTTGGGCTTTGCTGTGGTCTTTTGCTTGGGGTGACTGTGGTTGTCTACGTACAAGACCATGTAAGTTGGGGTGTCGCAGATATAGTTCTCATGGCAGTCATGGGTACCTCGCTGGTTATCTTCATTGTTGGGAGGCCGTTTTACCGCTATCGAAGACCTACAGGAAGCCCCCTGACACCAATGCTGCAGGTTCTTGTAGCGGCCATTGCGAAGAGAAAGCTGCCATATCCTTCTGATCCTGCTCAATTGTATGAAATTTCCCAGTCGGAGAAGGTCCGTGGGAGGCTTTTGTGCCACACCAACAAGCTCAAATTTCTTGACAAGGCAGCCATCATAAGCACAGAAAATTCAGCTGAGAAGCAAAATCCTTGGACTCTTGCAACAGTAACAAAGGTCGAGGAGATGAAACTAGTCCTCAACATTATCCCCATTTGGCTAGCCACCCTACCATTTGGAATGTGTGTAGCACAAACCTCTACGTTCTTCATCAAACAAGGTGTCTCCATGAACCGAAGCATCGCCAACGGTTTCGAGATCCCCCCTGCCTCAATCTACTCTCTCGCAGCCATCGGAATGATCATATCCGTCACGTTCTACGAGAAAATCCTAGTCCCCGTCATGCGAAGAACAACTGGAAACGAAAGGGGAATCAACATCCTCCAGAGAATCGGAATTGGAATGCTCTTCTTAATCGGCACAATGGTAGCAGCTGCCTTGGTGGAGAAGAAAAGACTAGGGATTGTTGAGAAAGACCCTTTAAAGAGTTCACATTCCATGAGTGTGTTCTGGTTAGCACCCCAATTTGTGATAATTGGATTTGGAGATGGGTTTACTCTTGTAGGTCTACAGGAGTATTTCTACGACCAAGTTCCGGACTCCATGAGGAGCTTGGGAATTGCGTTTTACCTTGGTGTAATTGGAGCTGGAAATTTTCTCAGTAGCCTCTTGATCACGGCCATTGATCACATCACAGAGCAAAGGGGGAAAAGTTGGTTTGGTAAGGATTTGAATAGTAGTCGTTTGGACAAGTTTTACTGGCTATTGGCTTGTATGGCTGCAGCAAATTTGTGTGTTTATGTGTTTTTGGCTCGGCGTTACTCTTACAAGAATGTGCAGAAGGTAGCTGTGGTCGACTGCTATGAAGGTGAAGAGGAAAAGGGCGGTTCATTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

498

Amino Acids

55.58

Weight (kDa)

8.79

Isoelectric Point (pI)

43.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	4 - 420	4.1e-10	Major Facilitator Superfamily
PTR2	PF00854	17 - 433	1.6e-88	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37900 AT2G37900 AT3G53960
fragaria_vesca	FvH4_6g12770 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570
malus_domestica	MD01G1141500.v1.1 MD04G1138500.v1.1 MD07G1205700.v1.1 MD12G1153900.v1.1 MD12G1154200.v1.1
prunus_persica	Prupe.2G241800_v2.0.a1 Prupe.6G264100_v2.0.a1
pyrus_communis	pycom04g12670 pycom07g19250 pycom12g14650
rosa_chinensis	RchiOBHm_Chr1g0368741 RchiOBHm_Chr3g0464761
rosa_laevigata	RLG00000024674 RLG00000027192
rosa_multiflora	Rmu_sc0001791.1_g000017 Rmu_sc0007114.1_g000013
rosa_roxburghii	Rroxscaffold_4G00288310 Rroxscaffold_6G00415440
rosa_rugosa	Rorug01G0344800 Rorug03G0073800 Rorug03G0073900
rosa_samantha	Rh1AG351700 Rh1BG315400 Rh3DG137900
rosa_wichuraiana	Rw3G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	499
Acc65I	GGTACC	1 cut(s)	425
AccB1I	GGYRCC	1 cut(s)	425
AccB7I	CCANNNNNTGG	3 cut(s)	14, 111, 178
AccI	GTMKAC	3 cut(s)	366, 1165, 1452
AccIII	TCCGGA	1 cut(s)	1192
AciI	CCGC	3 cut(s)	466, 521, 1482
AclWI	GGATC	2 cut(s)	551, 850
AcoI	YGGCCR	2 cut(s)	522, 1275
AcsI	RAATTY	5 cut(s)	576, 632, 667, 1249, 1384
AcuI	CTGAAG	1 cut(s)	300
AfaI	GTAC	3 cut(s)	120, 372, 427
AfiI	CCNNNNNNNGG	4 cut(s)	14, 111, 178, 1192
AgsI	TTSAA	3 cut(s)	158, 310, 1330
AhlI	ACTAGT	1 cut(s)	730
AjnI	CCWGG	1 cut(s)	110
Alw26I	GTCTC	2 cut(s)	70, 826
AlwI	GGATC	2 cut(s)	551, 850
Aor13HI	TCCGGA	1 cut(s)	1192
AoxI	GGCC	5 cut(s)	131, 223, 455, 522, 1275
ApeKI	GCWGC	8 cut(s)	505, 541, 647, 884, 1028, 1031, 1376, 1379
ApoI	RAATTY	5 cut(s)	576, 632, 667, 1249, 1384
ArsI	GACNNNNNNTTYG	2 cut(s)	804, 836
Asp718I	GGTACC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	595
AsuHPI	GGTGA	2 cut(s)	364, 1478
AsuNHI	GCTAGC	1 cut(s)	757
AvaII	GGWCC	1 cut(s)	595
AxyI	CCTNAGG	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	425
BbsI	GAAGAC	1 cut(s)	481
BbvI	GCAGC	8 cut(s)	492, 528, 659, 896, 1018, 1040, 1363, 1391
BccI	CCATC	4 cut(s)	80, 659, 896, 1139
BceAI	ACGGC	2 cut(s)	442, 1290
BciT130I	CCWGG	1 cut(s)	112
BclI	TGATCA	4 cut(s)	271, 897, 1269, 1282
BcoDI	GTCTC	2 cut(s)	70, 826
BcuI	ACTAGT	1 cut(s)	730
BfaI	CTAG	5 cut(s)	191, 731, 758, 929, 1055
BfmI	CTRYAG	4 cut(s)	480, 506, 1166, 1377
BfuAI	ACCTGC	1 cut(s)	499
BisI	GCNGC	9 cut(s)	506, 522, 542, 648, 885, 1029, 1032, 1377, 1380
BlsI	GCNGC	9 cut(s)	507, 523, 543, 649, 886, 1030, 1033, 1378, 1381
Bme1390I	CCNGG	1 cut(s)	112
Bme18I	GGWCC	1 cut(s)	595
BmgT120I	GGNCC	1 cut(s)	595
BmiI	GGNNCC	1 cut(s)	427
BmrFI	CCNGG	1 cut(s)	112
BmrI	ACTGGG	1 cut(s)	577
BmsI	GCATC	2 cut(s)	22, 846
BmtI	GCTAGC	1 cut(s)	761
BmuI	ACTGGG	1 cut(s)	577
BpiI	GAAGAC	1 cut(s)	481
BpmI	CTGGAG	2 cut(s)	240, 965
BsaAI	YACGTR	1 cut(s)	370
BsaBI	GATNNNNATC	1 cut(s)	270
BsaI	GGTCTC	1 cut(s)	70
BsaJI	CCNNGG	4 cut(s)	598, 689, 1035, 1228
BsaWI	WCCGGW	1 cut(s)	1192
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	4 cut(s)	14, 111, 178, 1192
Bse1I	ACTGG	4 cut(s)	223, 583, 958, 1361
Bse21I	CCTNAGG	1 cut(s)	128
Bse3DI	GCAATG	1 cut(s)	525
Bse8I	GATNNNNATC	1 cut(s)	270
BseAI	TCCGGA	1 cut(s)	1192
BseBI	CCWGG	1 cut(s)	112
BseDI	CCNNGG	4 cut(s)	598, 689, 1035, 1228
BseGI	GGATG	3 cut(s)	68, 145, 975
BseJI	GATNNNNATC	1 cut(s)	270
BseLI	CCNNNNNNNGG	4 cut(s)	14, 111, 178, 1192
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	2 cut(s)	666, 1270
BseNI	ACTGG	4 cut(s)	223, 583, 958, 1361
BseRI	GAGGAG	2 cut(s)	734, 1219
BseXI	GCAGC	8 cut(s)	492, 528, 659, 896, 1018, 1040, 1363, 1391
BsgI	GTGCAG	1 cut(s)	1454
BshFI	GGCC	5 cut(s)	133, 225, 457, 524, 1277
BshNI	GGYRCC	1 cut(s)	425
BsiSI	CCGG	1 cut(s)	1193
BslFI	GGGAC	1 cut(s)	917
BslI	CCNNNNNNNGG	4 cut(s)	14, 111, 178, 1192
BsmAI	GTCTC	2 cut(s)	70, 826
BsmFI	GGGAC	1 cut(s)	917
BsmI	GAATGC	1 cut(s)	1005
BsnI	GGCC	5 cut(s)	133, 225, 457, 524, 1277
Bso31I	GGTCTC	1 cut(s)	70
Bsp13I	TCCGGA	1 cut(s)	1192
Bsp143I	GATC	7 cut(s)	204, 271, 556, 855, 897, 1269, 1282
BspACI	CCGC	3 cut(s)	466, 521, 1482
BspANI	GGCC	5 cut(s)	133, 225, 457, 524, 1277
BspCNI	CTCAG	2 cut(s)	667, 1269
BspEI	TCCGGA	1 cut(s)	1192
BspLI	GGNNCC	1 cut(s)	427
BspMAI	CTGCAG	2 cut(s)	510, 1381
BspMI	ACCTGC	1 cut(s)	499
BspOI	GCTAGC	1 cut(s)	761
BspPI	GGATC	2 cut(s)	551, 850
BspQI	GCTCTTC	1 cut(s)	1010
BspT107I	GGYRCC	1 cut(s)	425
BspTNI	GGTCTC	1 cut(s)	70
BsrDI	GCAATG	1 cut(s)	525
BsrI	ACTGG	4 cut(s)	223, 583, 958, 1361
BssECI	CCNNGG	4 cut(s)	598, 689, 1035, 1228
BssMI	GATC	7 cut(s)	204, 271, 556, 855, 897, 1269, 1282
BssT1I	CCWWGG	3 cut(s)	689, 1035, 1228
Bst2UI	CCWGG	1 cut(s)	112
Bst4CI	ACNGT	4 cut(s)	58, 358, 706, 848
Bst6I	CTCTTC	3 cut(s)	527, 1010, 1464
BstBAI	YACGTR	1 cut(s)	370
BstC8I	GCNNGC	1 cut(s)	759
BstDEI	CTNAG	3 cut(s)	128, 675, 1256
BstDSI	CCRYGG	1 cut(s)	598
BstF5I	GGATG	3 cut(s)	68, 145, 975
BstKTI	GATC	7 cut(s)	207, 274, 559, 858, 900, 1272, 1285
BstMAI	GTCTC	2 cut(s)	70, 826
BstMBI	GATC	7 cut(s)	204, 271, 556, 855, 897, 1269, 1282
BstMWI	GCNNNNNNNGC	2 cut(s)	527, 1373
BstNI	CCWGG	1 cut(s)	112
BstSCI	CCNGG	1 cut(s)	110
BstSFI	CTRYAG	4 cut(s)	480, 506, 1166, 1377
BstSNI	TACGTA	1 cut(s)	370
BstV1I	GCAGC	8 cut(s)	492, 528, 659, 896, 1018, 1040, 1363, 1391
BstV2I	GAAGAC	1 cut(s)	481
BstX2I	RGATCY	1 cut(s)	855
BstYI	RGATCY	1 cut(s)	855
Bsu36I	CCTNAGG	1 cut(s)	128
BsuRI	GGCC	5 cut(s)	133, 225, 457, 524, 1277
BtgI	CCRYGG	1 cut(s)	598
BtgZI	GCGATG	1 cut(s)	823
BtsCI	GGATG	3 cut(s)	68, 145, 975
BtsIMutI	CAGTG	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	499
Cac8I	GCNNGC	1 cut(s)	759
Cfr13I	GGNCC	1 cut(s)	595
Csp6I	GTAC	3 cut(s)	119, 371, 426
CviQI	GTAC	3 cut(s)	119, 371, 426
DdeI	CTNAG	3 cut(s)	128, 675, 1256
DpnI	GATC	7 cut(s)	206, 273, 558, 857, 899, 1271, 1284
DpnII	GATC	7 cut(s)	204, 271, 556, 855, 897, 1269, 1282
DraI	TTTAAA	1 cut(s)	1080
EaeI	YGGCCR	2 cut(s)	522, 1275
Eam1104I	CTCTTC	3 cut(s)	527, 1010, 1464
EarI	CTCTTC	3 cut(s)	527, 1010, 1464
Eco105I	TACGTA	1 cut(s)	370
Eco130I	CCWWGG	3 cut(s)	689, 1035, 1228
Eco147I	AGGCCT	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	70
Eco47I	GGWCC	1 cut(s)	595
Eco57I	CTGAAG	1 cut(s)	300
Eco81I	CCTNAGG	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	110
EcoT14I	CCWWGG	3 cut(s)	689, 1035, 1228
ErhI	CCWWGG	3 cut(s)	689, 1035, 1228
FaqI	GGGAC	1 cut(s)	917
FbaI	TGATCA	4 cut(s)	271, 897, 1269, 1282
FblI	GTMKAC	3 cut(s)	366, 1165, 1452
Fnu4HI	GCNGC	9 cut(s)	506, 522, 542, 648, 885, 1029, 1032, 1377, 1380
FokI	GGATG	3 cut(s)	55, 132, 962
Fsp4HI	GCNGC	9 cut(s)	506, 522, 542, 648, 885, 1029, 1032, 1377, 1380
FspBI	CTAG	5 cut(s)	191, 731, 758, 929, 1055
GluI	GCNGC	9 cut(s)	506, 522, 542, 648, 885, 1029, 1032, 1377, 1380
GsuI	CTGGAG	2 cut(s)	240, 965
HaeIII	GGCC	5 cut(s)	133, 225, 457, 524, 1277
HapII	CCGG	1 cut(s)	1193
HincII	GTYRAC	1 cut(s)	1453
HindII	GTYRAC	1 cut(s)	1453
HinfI	GANTC	6 cut(s)	4, 94, 694, 969, 987, 1196
HpaII	CCGG	1 cut(s)	1193
HphI	GGTGA	2 cut(s)	364, 1478
Hpy166II	GTNNAC	5 cut(s)	367, 1088, 1152, 1166, 1453
Hpy188I	TCNGA	4 cut(s)	556, 589, 893, 992
Hpy188III	TCNNGA	6 cut(s)	155, 638, 853, 982, 1193, 1267
Hpy8I	GTNNAC	5 cut(s)	367, 1088, 1152, 1166, 1453
HpyAV	CCTTC	5 cut(s)	92, 561, 586, 1432, 1457
HpyCH4III	ACNGT	4 cut(s)	58, 358, 706, 848
HpyCH4IV	ACGT	3 cut(s)	369, 800, 911
HpyCH4V	TGCA	4 cut(s)	508, 701, 1379, 1435
HpyF10VI	GCNNNNNNNGC	2 cut(s)	527, 1373
HpyF3I	CTNAG	3 cut(s)	128, 675, 1256
HpySE526I	ACGT	3 cut(s)	369, 800, 911
Kpn2I	TCCGGA	1 cut(s)	1192
KpnI	GGTACC	1 cut(s)	429
Ksp22I	TGATCA	4 cut(s)	271, 897, 1269, 1282
Kzo9I	GATC	7 cut(s)	204, 271, 556, 855, 897, 1269, 1282
LguI	GCTCTTC	1 cut(s)	1010
LmnI	GCTCC	3 cut(s)	251, 1206, 1241
Lsp1109I	GCAGC	8 cut(s)	492, 528, 659, 896, 1018, 1040, 1363, 1391
LweI	GCATC	2 cut(s)	22, 846
MaeI	CTAG	5 cut(s)	191, 731, 758, 929, 1055
MaeII	ACGT	3 cut(s)	369, 800, 911
MaeIII	GTNAC	5 cut(s)	137, 352, 706, 907, 1415
MalI	GATC	7 cut(s)	206, 273, 558, 857, 899, 1271, 1284
MboI	GATC	7 cut(s)	204, 271, 556, 855, 897, 1269, 1282
MfeI	CAATTG	2 cut(s)	310, 566
MflI	RGATCY	1 cut(s)	855
MlyI	GAGTC	2 cut(s)	688, 1190
MmeI	TCCRAC	1 cut(s)	567
MroI	TCCGGA	1 cut(s)	1192
MseI	TTAA	2 cut(s)	1010, 1079
MslI	CAYNNNNRTG	4 cut(s)	148, 200, 893, 1100
MspA1I	CMGCKG	2 cut(s)	674, 1031
MspI	CCGG	1 cut(s)	1193
MspR9I	CCNGG	1 cut(s)	112
MunI	CAATTG	2 cut(s)	310, 566
Mva1269I	GAATGC	1 cut(s)	1005
MvaI	CCWGG	1 cut(s)	112
MwoI	GCNNNNNNNGC	2 cut(s)	527, 1373
NdeII	GATC	7 cut(s)	204, 271, 556, 855, 897, 1269, 1282
NheI	GCTAGC	1 cut(s)	757
NlaIV	GGNNCC	1 cut(s)	427
NmeAIII	GCCGAG	1 cut(s)	1390
NmuCI	GTSAC	3 cut(s)	137, 352, 907
PceI	AGGCCT	1 cut(s)	133
PciSI	GCTCTTC	1 cut(s)	1010
PctI	GAATGC	1 cut(s)	1005
PfeI	GAWTC	4 cut(s)	4, 94, 969, 987
PflMI	CCANNNNNTGG	3 cut(s)	14, 111, 178
PkrI	GCNGC	9 cut(s)	507, 523, 543, 649, 886, 1030, 1033, 1378, 1381
PleI	GAGTC	2 cut(s)	688, 1190
PpsI	GAGTC	2 cut(s)	688, 1190
Ppu21I	YACGTR	1 cut(s)	370
Psp6I	CCWGG	1 cut(s)	110
PspGI	CCWGG	1 cut(s)	110
PspN4I	GGNNCC	1 cut(s)	427
PspPI	GGNCC	1 cut(s)	595
PstI	CTGCAG	2 cut(s)	510, 1381
PsuI	RGATCY	1 cut(s)	855
PvuII	CAGCTG	2 cut(s)	674, 1031
RsaI	GTAC	3 cut(s)	120, 372, 427
RsaNI	GTAC	3 cut(s)	119, 371, 426
RseI	CAYNNNNRTG	4 cut(s)	148, 200, 893, 1100
SalI	GTCGAC	1 cut(s)	1451
SapI	GCTCTTC	1 cut(s)	1010
SaqAI	TTAA	2 cut(s)	1010, 1079
SatI	GCNGC	9 cut(s)	506, 522, 542, 648, 885, 1029, 1032, 1377, 1380
Sau3AI	GATC	7 cut(s)	204, 271, 556, 855, 897, 1269, 1282
Sau96I	GGNCC	1 cut(s)	595
SchI	GAGTC	2 cut(s)	688, 1190
ScrFI	CCNGG	1 cut(s)	112
SfaNI	GCATC	2 cut(s)	22, 846
SfcI	CTRYAG	4 cut(s)	480, 506, 1166, 1377
SinI	GGWCC	1 cut(s)	595
SmiMI	CAYNNNNRTG	4 cut(s)	148, 200, 893, 1100
SnaBI	TACGTA	1 cut(s)	370
SpeI	ACTAGT	1 cut(s)	730
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	3 cut(s)	466, 521, 1482
SspMI	CTAG	5 cut(s)	191, 731, 758, 929, 1055
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	110
StyI	CCWWGG	3 cut(s)	689, 1035, 1228
TaaI	ACNGT	4 cut(s)	58, 358, 706, 848
TaiI	ACGT	3 cut(s)	372, 803, 914
TaqI	TCGA	4 cut(s)	472, 717, 852, 1452
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	4 cut(s)	4, 94, 969, 987
Tru1I	TTAA	2 cut(s)	1010, 1079
Tru9I	TTAA	2 cut(s)	1010, 1079
TscAI	CASTG	1 cut(s)	283
TseFI	GTSAC	3 cut(s)	137, 352, 907
TseI	GCWGC	8 cut(s)	505, 541, 647, 884, 1028, 1031, 1376, 1379
Tsp45I	GTSAC	3 cut(s)	137, 352, 907
TspDTI	ATGAA	9 cut(s)	13, 189, 433, 588, 740, 796, 842, 1476, 1476
TspGWI	ACGGA	2 cut(s)	587, 895
TspRI	CASTG	1 cut(s)	283
Van91I	CCANNNNNTGG	3 cut(s)	14, 111, 178
VpaK11BI	GGWCC	1 cut(s)	595
XapI	RAATTY	5 cut(s)	576, 632, 667, 1249, 1384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1207
XmiI	GTMKAC	3 cut(s)	366, 1165, 1452
XspI	CTAG	5 cut(s)	191, 731, 758, 929, 1055

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.