Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003626

Physical Location & Seq

Genomic Coordinates Forward (+)

9177250 .. 9180296

Gene Structure 3047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00288310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1782 bp

ATGGAGCTGCAAGAAGTCGAAAAGAGATTAAAAGGAGCAGGAGGAGAAACAAAAAGGGAGGAAGAGACATTGGTTCATGATTCATCTATAGATTACAAAGGAACAGTTCCTCTACGTGCTTCAACAGGCGTTTGGAAAGCTTCTCTGTTCATCATCACTATTGAATTTAGTGAGAGGCTGAGTTACTTTGGAATAGCAACAAATCTCATCACATACCTCACCCAAGTGCTTCATCAAGACATCAAAACCGCAGCGAAAAATGTGAACTATTGGACAGGAGTGACGACAATCATGCCTTTAATCGGAGGGTTCTTAGCAGATGCCTACACTGGTCGATTCAACATGGTCATGTTTTCATCCCTCATATATCTAATGGGTCTGAGTCTCTTGACAATGTCGCAATTCATCCCAAGTCTAAAGCCTTGCAACACGAAGATATGTCGACAGCCTAGAAAGCTTCATGAAGTGTTACTTTTTGTTGCCTTGCACTTCATCTCTGTTGGAACCGGAGGTCACAAGCCATGTCTTCAAAGCTTTGGTGCTGACCAATTCGACGATGATCACTTGGAAGAAAGAAAGAAGAAAATGTCCTTCTTCAACTGGTGGAACTTTGCACTTTGTTGTGGGCTGTTTCTTGGTGTAACTGTGATTGTTTACGTTCAGGACTCAGTGAGCTGGGGCGTAGCAGATCTTGTTCTCACAATCACCCTGGCTATTGCAATAGTGACGTTTTATATGGGGAAGTATTGTTACCGTTATAGAGTAGCACAAGGAAGCCCTTTGAGACCCATGTTACAGGTCTTGGTTGCAGCCATTAGAAAAAGAAATTTGGCCAATCCTCAAAACCCTGATCTGCTATTTGAAGTTCCCAAGTCAGATAAGTACTCCCAAGGAAGGCTTCTACTTCACACAAATAGGCTCAGGTTTCTAGACAAGGCCGCAATAATTGAAGAGAATGAGAATTACCCATCTTGTGAACAGAAGCACAACCCTTGGAGATTGGCTACATTGACAAGAGTGGAGGAGTTGAAACTCATCTTGAGCATGATCCCCATTTGGCTCACCTCATTAACAAATGCAGTGTGTTTGGCACAAGCCCCGACCTTCTTTGTTAAACAAGCTGCTACAATGAACCGAAATATTACTAGCAACTTCAAGATCCCACCAGCCACCATTTTCTCTCTTGGAGCCATTGCAATGCTAATCTCAGTCACAGTCTATGACAAAATTCTTGTTCCAATTCTACGGAAAGCCACCGGAAATGAAAGGGGTATGAACATCCTCCATAGGATTGGATTTGGGATGATACTAACGGTGATAGCAATGTCCGTGGCAGCACTTGTCGAACGAAAAAGGTTAAGATATGCTGATCCACAAGCTATGACTGTGTTCTGGTTAGCACCCCAGTACATAATTCTTGGTATAGGGGATGCATTTACTCTGGTTGGTTTGCAAGAGTATTTCTATGACCAAGTTCCTGATTCAATGAGAAGTTTAGGGGTTGCTTTGTACTTGAGTGTGATTGGGGCTGGGAGCTTCTTGAGCAGCTTTTTAATTATTGCTATAGATCATGTTACAGAGAAGGATGGGAGGAGTTGGTTTGGGAAGGACTTGAGTGGAAGCCGCTTGGACAATTTCTTCTGGCTTTTGGCAGCCGTGAATGGGTTGAATTCATGTGTTTATGGGTATTTGGCTGGGGGTTATACCTACAAGAATGTGGAGAGGCGAGTAGTTTTGGATGATAATTCTGTGACTAATGGAAATGATCAATCCATGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

593

Amino Acids

66.53

Weight (kDa)

8.98

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	56 - 515	4.8e-13	Major Facilitator Superfamily
PTR2	PF00854	113 - 527	6.4e-84	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003626)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37900 AT2G37900 AT3G53960
fragaria_vesca	FvH4_6g12770 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570 FvH4_7g23570
malus_domestica	MD01G1141500.v1.1 MD04G1138500.v1.1 MD07G1205700.v1.1 MD12G1153900.v1.1 MD12G1154200.v1.1
prunus_persica	Prupe.2G241800_v2.0.a1 Prupe.6G264100_v2.0.a1
pyrus_communis	pycom04g12670 pycom07g19250 pycom12g14650
rosa_chinensis	RchiOBHm_Chr1g0368741 RchiOBHm_Chr3g0464761
rosa_laevigata	RLG00000024674 RLG00000027192
rosa_multiflora	Rmu_sc0001791.1_g000017 Rmu_sc0007114.1_g000013
rosa_roxburghii	Rroxscaffold_4G00288310 Rroxscaffold_6G00415440
rosa_rugosa	Rorug01G0344800 Rorug03G0073800 Rorug03G0073900
rosa_samantha	Rh1AG351700 Rh1BG315400 Rh3DG137900
rosa_wichuraiana	Rw3G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	442
AciI	CCGC	3 cut(s)	249, 939, 1624
AclWI	GGATC	3 cut(s)	1042, 1153, 1364
AcoI	YGGCCR	1 cut(s)	831
AcsI	RAATTY	4 cut(s)	164, 826, 1227, 1669
AfaI	GTAC	3 cut(s)	884, 1409, 1511
AfiI	CCNNNNNNNGG	3 cut(s)	302, 894, 1662
AjnI	CCWGG	1 cut(s)	708
AjuI	GAANNNNNNNTTGG	2 cut(s)	882, 914
AleI	CACNNNNGTG	1 cut(s)	224
AluBI	AGCT	9 cut(s)	7, 140, 457, 534, 675, 1121, 1379, 1536, 1548
AluI	AGCT	9 cut(s)	7, 140, 457, 534, 675, 1121, 1379, 1536, 1548
Alw26I	GTCTC	3 cut(s)	59, 389, 778
AlwI	GGATC	3 cut(s)	1042, 1153, 1364
AoxI	GGCC	2 cut(s)	831, 936
ApeKI	GCWGC	7 cut(s)	7, 251, 809, 1121, 1334, 1545, 1652
ApoI	RAATTY	4 cut(s)	164, 826, 1227, 1669
AsuHPI	GGTGA	4 cut(s)	211, 697, 1054, 1327
BalI	TGGCCA	1 cut(s)	833
BarI	GAAGNNNNNNTAC	2 cut(s)	734, 766
BbsI	GAAGAC	1 cut(s)	518
BbvI	GCAGC	6 cut(s)	263, 821, 1108, 1346, 1557, 1664
BccI	CCATC	2 cut(s)	976, 1580
BceAI	ACGGC	1 cut(s)	1640
BcgI	CGANNNNNNTGC	2 cut(s)	274, 308
BciT130I	CCWGG	1 cut(s)	710
BclI	TGATCA	2 cut(s)	559, 1765
BcoDI	GTCTC	3 cut(s)	59, 389, 778
BfaI	CTAG	3 cut(s)	450, 929, 1146
BfmI	CTRYAG	2 cut(s)	87, 1563
BglII	AGATCT	1 cut(s)	688
BisI	GCNGC	9 cut(s)	8, 252, 810, 939, 1122, 1335, 1546, 1624, 1653
BlsI	GCNGC	9 cut(s)	9, 253, 811, 940, 1123, 1336, 1547, 1625, 1654
BmcAI	AGTACT	1 cut(s)	884
Bme1390I	CCNGG	1 cut(s)	710
BmiI	GGNNCC	2 cut(s)	505, 1189
BmrFI	CCNGG	1 cut(s)	710
BmrI	ACTGGG	1 cut(s)	1399
BmsI	GCATC	2 cut(s)	310, 1420
BmuI	ACTGGG	1 cut(s)	1399
BpiI	GAAGAC	1 cut(s)	518
Bpu10I	CCTNAGC	1 cut(s)	920
BpuEI	CTTGAG	4 cut(s)	1060, 1534, 1561, 1633
BsaAI	YACGTR	1 cut(s)	116
BsaI	GGTCTC	1 cut(s)	778
BsaJI	CCNNGG	5 cut(s)	708, 889, 992, 1329, 1773
BsaWI	WCCGGW	2 cut(s)	506, 1256
Bsc4I	CCNNNNNNNGG	3 cut(s)	302, 894, 1662
Bse1I	ACTGG	3 cut(s)	334, 605, 1405
Bse3DI	GCAATG	3 cut(s)	1191, 1203, 1329
BseBI	CCWGG	1 cut(s)	710
BseDI	CCNNGG	5 cut(s)	708, 889, 992, 1329, 1773
BseGI	GGATG	7 cut(s)	356, 405, 1278, 1308, 1435, 1591, 1744
BseLI	CCNNNNNNNGG	3 cut(s)	302, 894, 1662
BseMI	GCAATG	3 cut(s)	1191, 1203, 1329
BseMII	CTCAG	5 cut(s)	170, 371, 681, 934, 1221
BseNI	ACTGG	3 cut(s)	334, 605, 1405
BseRI	GAGGAG	3 cut(s)	57, 1037, 1606
BseXI	GCAGC	6 cut(s)	263, 821, 1108, 1346, 1557, 1664
BseYI	CCCAGC	3 cut(s)	675, 1529, 1694
BshFI	GGCC	2 cut(s)	833, 938
BsiSI	CCGG	2 cut(s)	507, 1257
BslI	CCNNNNNNNGG	3 cut(s)	302, 894, 1662
BsmAI	GTCTC	3 cut(s)	59, 389, 778
BsnI	GGCC	2 cut(s)	833, 938
Bso31I	GGTCTC	1 cut(s)	778
Bsp143I	GATC	8 cut(s)	559, 688, 850, 1047, 1158, 1369, 1567, 1765
Bsp19I	CCATGG	1 cut(s)	1773
BspACI	CCGC	3 cut(s)	249, 939, 1624
BspANI	GGCC	2 cut(s)	833, 938
BspCNI	CTCAG	5 cut(s)	171, 372, 680, 933, 1220
BspHI	TCATGA	2 cut(s)	76, 460
BspLI	GGNNCC	2 cut(s)	505, 1189
BspPI	GGATC	3 cut(s)	1042, 1153, 1364
BspTNI	GGTCTC	1 cut(s)	778
BsrDI	GCAATG	3 cut(s)	1191, 1203, 1329
BsrI	ACTGG	3 cut(s)	334, 605, 1405
BssECI	CCNNGG	5 cut(s)	708, 889, 992, 1329, 1773
BssMI	GATC	8 cut(s)	559, 688, 850, 1047, 1158, 1369, 1567, 1765
BssT1I	CCWWGG	3 cut(s)	889, 992, 1773
Bst2UI	CCWGG	1 cut(s)	710
Bst4CI	ACNGT	6 cut(s)	106, 646, 755, 1216, 1315, 1387
Bst6I	CTCTTC	2 cut(s)	57, 945
BstBAI	YACGTR	1 cut(s)	116
BstDEI	CTNAG	6 cut(s)	179, 313, 380, 667, 920, 1207
BstDSI	CCRYGG	2 cut(s)	1329, 1773
BstF5I	GGATG	7 cut(s)	356, 405, 1278, 1308, 1435, 1591, 1744
BstKTI	GATC	8 cut(s)	562, 691, 853, 1050, 1161, 1372, 1570, 1768
BstMAI	GTCTC	3 cut(s)	59, 389, 778
BstMBI	GATC	8 cut(s)	559, 688, 850, 1047, 1158, 1369, 1567, 1765
BstMWI	GCNNNNNNNGC	2 cut(s)	454, 1542
BstNI	CCWGG	1 cut(s)	710
BstSCI	CCNGG	1 cut(s)	708
BstSFI	CTRYAG	2 cut(s)	87, 1563
BstV1I	GCAGC	6 cut(s)	263, 821, 1108, 1346, 1557, 1664
BstV2I	GAAGAC	1 cut(s)	518
BstX2I	RGATCY	2 cut(s)	688, 1158
BstXI	CCANNNNNNTGG	1 cut(s)	1292
BstYI	RGATCY	2 cut(s)	688, 1158
BsuRI	GGCC	2 cut(s)	833, 938
BtgI	CCRYGG	2 cut(s)	1329, 1773
BtsCI	GGATG	7 cut(s)	356, 405, 1278, 1308, 1435, 1591, 1744
BtsI	GCAGTG	1 cut(s)	1086
BtsIMutI	CAGTG	3 cut(s)	327, 675, 1086
CciI	TCATGA	2 cut(s)	76, 460
Csp6I	GTAC	3 cut(s)	883, 1408, 1510
CspCI	CAANNNNNGTGG	2 cut(s)	1311, 1346
CviQI	GTAC	3 cut(s)	883, 1408, 1510
DdeI	CTNAG	6 cut(s)	179, 313, 380, 667, 920, 1207
DpnI	GATC	8 cut(s)	561, 690, 852, 1049, 1160, 1371, 1569, 1767
DpnII	GATC	8 cut(s)	559, 688, 850, 1047, 1158, 1369, 1567, 1765
EaeI	YGGCCR	1 cut(s)	831
Eam1104I	CTCTTC	2 cut(s)	57, 945
EarI	CTCTTC	2 cut(s)	57, 945
Eco130I	CCWWGG	3 cut(s)	889, 992, 1773
Eco31I	GGTCTC	1 cut(s)	778
EcoRI	GAATTC	1 cut(s)	1669
EcoRII	CCWGG	1 cut(s)	708
EcoT14I	CCWWGG	3 cut(s)	889, 992, 1773
EcoT22I	ATGCAT	1 cut(s)	1435
ErhI	CCWWGG	3 cut(s)	889, 992, 1773
FalI	AAGNNNNNCTT	4 cut(s)	456, 488, 882, 914
FbaI	TGATCA	2 cut(s)	559, 1765
FblI	GTMKAC	1 cut(s)	442
Fnu4HI	GCNGC	9 cut(s)	8, 252, 810, 939, 1122, 1335, 1546, 1624, 1653
FokI	GGATG	7 cut(s)	343, 392, 1265, 1315, 1442, 1598, 1751
Fsp4HI	GCNGC	9 cut(s)	8, 252, 810, 939, 1122, 1335, 1546, 1624, 1653
FspBI	CTAG	3 cut(s)	450, 929, 1146
GluI	GCNGC	9 cut(s)	8, 252, 810, 939, 1122, 1335, 1546, 1624, 1653
GsaI	CCCAGC	3 cut(s)	679, 1533, 1698
HaeIII	GGCC	2 cut(s)	833, 938
HapII	CCGG	2 cut(s)	507, 1257
HincII	GTYRAC	1 cut(s)	443
HindII	GTYRAC	1 cut(s)	443
HindIII	AAGCTT	3 cut(s)	138, 455, 532
HinfI	GANTC	5 cut(s)	80, 336, 382, 665, 1481
HpaII	CCGG	2 cut(s)	507, 1257
HphI	GGTGA	4 cut(s)	211, 697, 1054, 1327
Hpy166II	GTNNAC	4 cut(s)	265, 443, 655, 977
Hpy188I	TCNGA	3 cut(s)	305, 381, 877
Hpy8I	GTNNAC	4 cut(s)	265, 443, 655, 977
Hpy99I	CGWCG	1 cut(s)	557
HpyAV	CCTTC	5 cut(s)	601, 888, 1114, 1576, 1600
HpyCH4III	ACNGT	6 cut(s)	106, 646, 755, 1216, 1315, 1387
HpyCH4IV	ACGT	3 cut(s)	115, 657, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	454, 1542
HpyF3I	CTNAG	6 cut(s)	179, 313, 380, 667, 920, 1207
HpySE526I	ACGT	3 cut(s)	115, 657, 728
Ksp22I	TGATCA	2 cut(s)	559, 1765
Kzo9I	GATC	8 cut(s)	559, 688, 850, 1047, 1158, 1369, 1567, 1765
LmnI	GCTCC	4 cut(s)	4, 35, 1187, 1533
Lsp1109I	GCAGC	6 cut(s)	263, 821, 1108, 1346, 1557, 1664
LweI	GCATC	2 cut(s)	310, 1420
MaeI	CTAG	3 cut(s)	450, 929, 1146
MaeII	ACGT	3 cut(s)	115, 657, 728
MalI	GATC	8 cut(s)	561, 690, 852, 1049, 1160, 1371, 1569, 1767
MboI	GATC	8 cut(s)	559, 688, 850, 1047, 1158, 1369, 1567, 1765
MboII	GAAGA	8 cut(s)	74, 445, 518, 581, 586, 592, 962, 1630
MflI	RGATCY	2 cut(s)	688, 1158
MlsI	TGGCCA	1 cut(s)	833
MluNI	TGGCCA	1 cut(s)	833
MlyI	GAGTC	2 cut(s)	391, 659
MmeI	TCCRAC	1 cut(s)	481
Mox20I	TGGCCA	1 cut(s)	833
Mph1103I	ATGCAT	1 cut(s)	1435
MscI	TGGCCA	1 cut(s)	833
MseI	TTAA	7 cut(s)	29, 299, 1070, 1113, 1358, 1553, 1780
MslI	CAYNNNNRTG	3 cut(s)	224, 347, 1196
Msp20I	TGGCCA	1 cut(s)	833
MspI	CCGG	2 cut(s)	507, 1257
MspR9I	CCNGG	1 cut(s)	710
MvaI	CCWGG	1 cut(s)	710
MwoI	GCNNNNNNNGC	2 cut(s)	454, 1542
NcoI	CCATGG	1 cut(s)	1773
NdeII	GATC	8 cut(s)	559, 688, 850, 1047, 1158, 1369, 1567, 1765
NlaIV	GGNNCC	2 cut(s)	505, 1189
NmuCI	GTSAC	5 cut(s)	280, 512, 724, 1210, 1750
NsiI	ATGCAT	1 cut(s)	1435
OliI	CACNNNNGTG	1 cut(s)	224
PagI	TCATGA	2 cut(s)	76, 460
PfeI	GAWTC	3 cut(s)	80, 336, 1481
PflFI	GACNNNGTC	1 cut(s)	394
PkrI	GCNGC	9 cut(s)	9, 253, 811, 940, 1123, 1336, 1547, 1625, 1654
PleI	GAGTC	2 cut(s)	390, 659
PpsI	GAGTC	2 cut(s)	390, 659
Ppu21I	YACGTR	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	708
PspFI	CCCAGC	3 cut(s)	675, 1529, 1694
PspGI	CCWGG	1 cut(s)	708
PspN4I	GGNNCC	2 cut(s)	505, 1189
PsuI	RGATCY	2 cut(s)	688, 1158
PsyI	GACNNNGTC	1 cut(s)	394
RsaI	GTAC	3 cut(s)	884, 1409, 1511
RsaNI	GTAC	3 cut(s)	883, 1408, 1510
RseI	CAYNNNNRTG	3 cut(s)	224, 347, 1196
SalI	GTCGAC	1 cut(s)	441
SaqAI	TTAA	7 cut(s)	29, 299, 1070, 1113, 1358, 1553, 1780
SatI	GCNGC	9 cut(s)	8, 252, 810, 939, 1122, 1335, 1546, 1624, 1653
Sau3AI	GATC	8 cut(s)	559, 688, 850, 1047, 1158, 1369, 1567, 1765
ScaI	AGTACT	1 cut(s)	884
SchI	GAGTC	2 cut(s)	391, 659
ScrFI	CCNGG	1 cut(s)	710
SfaNI	GCATC	2 cut(s)	310, 1420
SfcI	CTRYAG	2 cut(s)	87, 1563
SmiMI	CAYNNNNRTG	3 cut(s)	224, 347, 1196
SmlI	CTYRAG	4 cut(s)	1039, 1513, 1540, 1612
SmoI	CTYRAG	4 cut(s)	1039, 1513, 1540, 1612
SsiI	CCGC	3 cut(s)	249, 939, 1624
SspI	AATATT	1 cut(s)	1141
SspMI	CTAG	3 cut(s)	450, 929, 1146
StyD4I	CCNGG	1 cut(s)	708
StyI	CCWWGG	3 cut(s)	889, 992, 1773
TaaI	ACNGT	6 cut(s)	106, 646, 755, 1216, 1315, 1387
TaiI	ACGT	3 cut(s)	118, 660, 731
TaqI	TCGA	5 cut(s)	18, 334, 442, 552, 1344
TatI	WGTACW	3 cut(s)	882, 1407, 1509
TauI	GCSGC	2 cut(s)	941, 1626
TfiI	GAWTC	3 cut(s)	80, 336, 1481
Tru1I	TTAA	7 cut(s)	29, 299, 1070, 1113, 1358, 1553, 1780
Tru9I	TTAA	7 cut(s)	29, 299, 1070, 1113, 1358, 1553, 1780
TscAI	CASTG	3 cut(s)	334, 675, 1086
TseFI	GTSAC	5 cut(s)	280, 512, 724, 1210, 1750
TseI	GCWGC	7 cut(s)	7, 251, 809, 1121, 1334, 1545, 1652
Tsp45I	GTSAC	5 cut(s)	280, 512, 724, 1210, 1750
TspGWI	ACGGA	2 cut(s)	1261, 1318
TspRI	CASTG	3 cut(s)	334, 675, 1086
Tth111I	GACNNNGTC	1 cut(s)	394
XapI	RAATTY	4 cut(s)	164, 826, 1227, 1669
XbaI	TCTAGA	1 cut(s)	928
XmiI	GTMKAC	1 cut(s)	442
XspI	CTAG	3 cut(s)	450, 929, 1146
ZrmI	AGTACT	1 cut(s)	884
Zsp2I	ATGCAT	1 cut(s)	1435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.