Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006415

Physical Location & Seq

Genomic Coordinates Forward (+)

12775550 .. 12779166

Gene Structure 3617 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g19280.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCAGCCATTGATGCAACTTCAAGATACGACCGAGTGAAGGAAGTGAAAGAATTCGACGAGTCGAAGATCGGAGTTAAAGGCCTGTCCGACTCCGGCATCACTTCCATCCCTCAATTCTTCGTCCACGACCCCGAAACCCTCGCGGACCTCAAACCCTCGTCAAAACACACTGCCCCCACCCTCCCCACCATCGACCTTTCACATATCAACTCGGTTACTCACCGTGACGGAATTGTTGAGCAGATCAAACTCGCCGCTTCAACATGGGGTTTCTTCCAAGTAATCAACCACGGCATACCCGATTCGGTACTCGATGAGACGTTGAAGGCTGTTAAAGCGTTTCACGATCAGCCCCACGAGGTGAAGGCCAAGTTCTACAAGCGAGAAGAAGGAAAGGGCGTCATGTATGCCAGCAATAACGACTTGTACCGTGCAAAGGCGGCGAGCTGGCACGACTCGTTGCAGGTCTGGATGGGCCCTCAGCGCTCCGCGGCGGAGGAGATCCCTGAGATGTGCCGGAGTGAGGTGGTTACATGGGATGTTTATGCAACCAAGGTGGGTGAAACTGTGATGGAGTTGCTTTCAGAAGGGTTAGGGTTGGAATCTGAGAAGTTTAAGGAGCTTACGTTTTCGGATGGGAGGGTGATTGTTGGCCACTGCTATCCCTACTGTCCTCAACCCGATCTCACGATGGGGATTACTTCGCATACTGATCCTGGGATACTTACAGTTCTATTGCAGAACCATGTACCTGGATTACAAGTGAGGCATCAGAATGAGTGGGTGGATGTCAAGCCTGTGCCTGGTGGTTTAGTTATCAATATTGGAGATCTTCTTCAGATAATCTCCAACGGCGAGTATAAAAGCATACAACATCGTGTCTTGGCCAACTCGTTGAAGGAATCCCGAATTTCAATCATCATGTTTCTGAACCAGGGAAAGTGGAATGAAGATGGTTATTATGGACCTCTTCCGGTGCTTCTGTCACCTGAGAAACCACCCGTCTATAGAAACTTCACAGTCCGTGAGTATATTGAAAATTTCTATGGCAAAGGTTTGGATAACAAATCTCTTATTGAAAAAATCACTATACAAAAGCTCAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

370

Amino Acids

41.42

Weight (kDa)

5.83

Isoelectric Point (pI)

35.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	62 - 157	6.8e-20	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	217 - 312	4.4e-30	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19280 FvH4_6g19280 FvH4_6g19281
malus_domestica	MD12G1028400.v1.1 MD12G1028500.v1.1 MD14G1028700.v1.1
prunus_persica	Prupe.7G102900_v2.0.a1 Prupe.7G103000_v2.0.a1
pyrus_communis	pycom12g02720 pycom12g02730 pycom14g02670 pycom14g02680
rosa_chinensis	RchiOBHm_Chr3g0474491
rosa_laevigata	RLG00000023917 RLG00000023927 RLG00000023928
rosa_multiflora	Rmu_sc0001353.1_g000045 Rmu_sc0039676.1_g000001
rosa_roxburghii	Rroxscaffold_6G00407120 Rroxscaffold_6G00407300
rosa_rugosa	Rorug03G0140600 Rorug03G0141100
rosa_samantha	Rh3AG192000 Rh3BG221500 Rh3CG216200 Rh3DG216900
rosa_wichuraiana	Rw3G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	457
AccII	CGCG	2 cut(s)	146, 494
AciI	CCGC	6 cut(s)	146, 258, 443, 492, 494, 497
AclWI	GGATC	2 cut(s)	499, 710
AcoI	YGGCCR	2 cut(s)	655, 888
AcsI	RAATTY	3 cut(s)	53, 912, 1042
AcuI	CTGAAG	1 cut(s)	824
AcyI	GRCGYC	1 cut(s)	402
AdeI	CACNNNGTG	1 cut(s)	364
AfaI	GTAC	3 cut(s)	312, 431, 753
AfeI	AGCGCT	1 cut(s)	488
AfiI	CCNNNNNNNGG	4 cut(s)	40, 439, 526, 806
AgsI	TTSAA	7 cut(s)	24, 264, 328, 901, 918, 1040, 1082
AjnI	CCWGG	4 cut(s)	718, 754, 805, 936
AluBI	AGCT	3 cut(s)	450, 625, 1102
AluI	AGCT	3 cut(s)	450, 625, 1102
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	2 cut(s)	499, 710
Aor51HI	AGCGCT	1 cut(s)	488
AoxI	GGCC	5 cut(s)	82, 369, 478, 655, 888
ApaI	GGGCCC	1 cut(s)	482
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	3 cut(s)	53, 912, 1042
Asp700I	GAANNNNTTC	1 cut(s)	53
AspLEI	GCGC	1 cut(s)	489
AspS9I	GGNCC	4 cut(s)	148, 478, 479, 968
AsuHPI	GGTGA	5 cut(s)	215, 376, 575, 658, 981
AvaII	GGWCC	2 cut(s)	148, 968
BaeGI	GKGCMC	1 cut(s)	482
BalI	TGGCCA	2 cut(s)	657, 890
BanII	GRGCYC	1 cut(s)	482
BauI	CACGAG	1 cut(s)	359
BbvCI	CCTCAGC	1 cut(s)	483
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	7 cut(s)	116, 200, 469, 568, 632, 688, 950
BceAI	ACGGC	2 cut(s)	310, 871
BciT130I	CCWGG	4 cut(s)	720, 756, 807, 938
BciVI	GTATCC	1 cut(s)	717
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	1 cut(s)	1108
BfmI	CTRYAG	1 cut(s)	1009
BfoI	RGCGCY	1 cut(s)	490
BfuAI	ACCTGC	1 cut(s)	457
BfuI	GTATCC	1 cut(s)	717
BglII	AGATCT	1 cut(s)	832
BisI	GCNGC	4 cut(s)	6, 258, 444, 495
BlsI	GCNGC	4 cut(s)	7, 259, 445, 496
Bme1390I	CCNGG	4 cut(s)	720, 756, 807, 938
Bme18I	GGWCC	2 cut(s)	148, 968
BmgT120I	GGNCC	4 cut(s)	148, 478, 479, 968
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	4 cut(s)	720, 756, 807, 938
BmsI	GCATC	3 cut(s)	4, 108, 781
Bpu10I	CCTNAGC	1 cut(s)	483
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	5 cut(s)	292, 492, 555, 719, 937
BsaWI	WCCGGW	1 cut(s)	976
BsaXI	ACNNNNNCTCC	2 cut(s)	614, 644
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 439, 526, 806
BseBI	CCWGG	4 cut(s)	720, 756, 807, 938
BseDI	CCNNGG	5 cut(s)	292, 492, 555, 719, 937
BseGI	GGATG	5 cut(s)	108, 480, 547, 643, 796
BseLI	CCNNNNNNNGG	4 cut(s)	40, 439, 526, 806
BseMII	CTCAG	4 cut(s)	497, 501, 600, 984
BseRI	GAGGAG	1 cut(s)	515
BseSI	GKGCMC	1 cut(s)	482
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	2 cut(s)	146, 494
Bsh1285I	CGRYCG	1 cut(s)	34
BshFI	GGCC	5 cut(s)	84, 371, 480, 657, 890
BsiEI	CGRYCG	1 cut(s)	34
BsiSI	CCGG	3 cut(s)	96, 520, 977
BslI	CCNNNNNNNGG	4 cut(s)	40, 439, 526, 806
BsmAI	GTCTC	1 cut(s)	314
BsmBI	CGTCTC	1 cut(s)	314
BsnI	GGCC	5 cut(s)	84, 371, 480, 657, 890
Bsp120I	GGGCCC	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	482
Bsp143I	GATC	7 cut(s)	69, 246, 349, 504, 685, 715, 832
BspACI	CCGC	6 cut(s)	146, 258, 443, 492, 494, 497
BspANI	GGCC	5 cut(s)	84, 371, 480, 657, 890
BspCNI	CTCAG	4 cut(s)	496, 502, 601, 985
BspFNI	CGCG	2 cut(s)	146, 494
BspLI	GGNNCC	1 cut(s)	480
BspMI	ACCTGC	1 cut(s)	457
BspPI	GGATC	2 cut(s)	499, 710
BssECI	CCNNGG	5 cut(s)	292, 492, 555, 719, 937
BssMI	GATC	7 cut(s)	69, 246, 349, 504, 685, 715, 832
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	1 cut(s)	359
BssT1I	CCWWGG	1 cut(s)	555
Bst2BI	CACGAG	1 cut(s)	359
Bst2UI	CCWGG	4 cut(s)	720, 756, 807, 938
Bst4CI	ACNGT	6 cut(s)	227, 434, 571, 674, 733, 1024
Bst6I	CTCTTC	1 cut(s)	978
BstACI	GRCGYC	1 cut(s)	402
BstC8I	GCNNGC	3 cut(s)	415, 448, 452
BstDEI	CTNAG	4 cut(s)	483, 510, 609, 993
BstDSI	CCRYGG	2 cut(s)	292, 492
BstF5I	GGATG	5 cut(s)	108, 480, 547, 643, 796
BstFNI	CGCG	2 cut(s)	146, 494
BstH2I	RGCGCY	1 cut(s)	490
BstHHI	GCGC	1 cut(s)	489
BstKTI	GATC	7 cut(s)	72, 249, 352, 507, 688, 718, 835
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	7 cut(s)	69, 246, 349, 504, 685, 715, 832
BstMCI	CGRYCG	1 cut(s)	34
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 338, 443, 486
BstNI	CCWGG	4 cut(s)	720, 756, 807, 938
BstSCI	CCNGG	4 cut(s)	718, 754, 805, 936
BstSFI	CTRYAG	1 cut(s)	1009
BstSLI	GKGCMC	1 cut(s)	482
BstUI	CGCG	2 cut(s)	146, 494
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	2 cut(s)	504, 832
BstXI	CCANNNNNNTGG	1 cut(s)	755
BstYI	RGATCY	2 cut(s)	504, 832
BsuI	GTATCC	1 cut(s)	717
BsuRI	GGCC	5 cut(s)	84, 371, 480, 657, 890
BtgI	CCRYGG	2 cut(s)	292, 492
BtsCI	GGATG	5 cut(s)	108, 480, 547, 643, 796
BtsI	GCAGTG	2 cut(s)	171, 658
BtsIMutI	CAGTG	2 cut(s)	171, 658
BveI	ACCTGC	1 cut(s)	457
Cac8I	GCNNGC	3 cut(s)	415, 448, 452
CfoI	GCGC	1 cut(s)	489
Cfr13I	GGNCC	4 cut(s)	148, 478, 479, 968
Cfr42I	CCGCGG	1 cut(s)	495
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	3 cut(s)	311, 430, 752
CspCI	CAANNNNNGTGG	2 cut(s)	540, 575
CviAII	CATG	5 cut(s)	267, 406, 537, 749, 925
CviQI	GTAC	3 cut(s)	311, 430, 752
DdeI	CTNAG	4 cut(s)	483, 510, 609, 993
DpnI	GATC	7 cut(s)	71, 248, 351, 506, 687, 717, 834
DpnII	GATC	7 cut(s)	69, 246, 349, 504, 685, 715, 832
DraIII	CACNNNGTG	1 cut(s)	364
EaeI	YGGCCR	2 cut(s)	655, 888
Eam1104I	CTCTTC	1 cut(s)	978
EarI	CTCTTC	1 cut(s)	978
EciI	GGCGGA	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	555
Eco147I	AGGCCT	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	482
Eco47I	GGWCC	2 cut(s)	148, 968
Eco47III	AGCGCT	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	824
EcoO109I	RGGNCCY	1 cut(s)	479
EcoRI	GAATTC	1 cut(s)	53
EcoRII	CCWGG	4 cut(s)	718, 754, 805, 936
EcoT14I	CCWWGG	1 cut(s)	555
EcoT38I	GRGCYC	1 cut(s)	482
ErhI	CCWWGG	1 cut(s)	555
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	5 cut(s)	270, 409, 540, 752, 928
FatI	CATG	5 cut(s)	266, 405, 536, 748, 924
Fnu4HI	GCNGC	4 cut(s)	6, 258, 444, 495
FokI	GGATG	5 cut(s)	95, 487, 554, 650, 803
FriOI	GRGCYC	1 cut(s)	482
Fsp4HI	GCNGC	4 cut(s)	6, 258, 444, 495
FspBI	CTAG	1 cut(s)	1108
GlaI	GCGC	1 cut(s)	488
GluI	GCNGC	4 cut(s)	6, 258, 444, 495
HaeII	RGCGCY	1 cut(s)	490
HaeIII	GGCC	5 cut(s)	84, 371, 480, 657, 890
HapII	CCGG	3 cut(s)	96, 520, 977
HgaI	GACGC	1 cut(s)	391
HhaI	GCGC	1 cut(s)	489
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	5 cut(s)	270, 409, 540, 752, 928
Hin6I	GCGC	1 cut(s)	487
HinP1I	GCGC	1 cut(s)	487
HinfI	GANTC	6 cut(s)	62, 92, 305, 458, 605, 905
HpaII	CCGG	3 cut(s)	96, 520, 977
HphI	GGTGA	5 cut(s)	215, 376, 575, 658, 981
Hpy166II	GTNNAC	1 cut(s)	127
Hpy188I	TCNGA	8 cut(s)	74, 91, 589, 610, 637, 777, 843, 933
Hpy188III	TCNNGA	5 cut(s)	24, 347, 472, 691, 909
Hpy8I	GTNNAC	1 cut(s)	127
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	6 cut(s)	34, 322, 361, 386, 584, 895
HpyCH4III	ACNGT	6 cut(s)	227, 434, 571, 674, 733, 1024
HpyCH4IV	ACGT	2 cut(s)	323, 629
HpyCH4V	TGCA	5 cut(s)	17, 437, 466, 551, 742
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 338, 443, 486
HpyF3I	CTNAG	4 cut(s)	483, 510, 609, 993
HpySE526I	ACGT	2 cut(s)	323, 629
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	5 cut(s)	270, 409, 540, 752, 928
HspAI	GCGC	1 cut(s)	487
KspI	CCGCGG	1 cut(s)	495
Kzo9I	GATC	7 cut(s)	69, 246, 349, 504, 685, 715, 832
LmnI	GCTCC	2 cut(s)	494, 622
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	3 cut(s)	4, 108, 781
MaeI	CTAG	1 cut(s)	1108
MaeII	ACGT	2 cut(s)	323, 629
MaeIII	GTNAC	4 cut(s)	217, 227, 532, 987
MalI	GATC	7 cut(s)	71, 248, 351, 506, 687, 717, 834
MboI	GATC	7 cut(s)	69, 246, 349, 504, 685, 715, 832
MboII	GAAGA	8 cut(s)	79, 112, 268, 401, 827, 830, 965, 965
MflI	RGATCY	2 cut(s)	504, 832
MhlI	GDGCHC	1 cut(s)	482
MlsI	TGGCCA	2 cut(s)	657, 890
MluCI	AATT	5 cut(s)	53, 116, 234, 912, 1042
MluNI	TGGCCA	2 cut(s)	657, 890
MlyI	GAGTC	3 cut(s)	71, 86, 452
MmeI	TCCRAC	3 cut(s)	114, 582, 876
Mox20I	TGGCCA	2 cut(s)	657, 890
MroXI	GAANNNNTTC	1 cut(s)	53
MscI	TGGCCA	2 cut(s)	657, 890
MseI	TTAA	3 cut(s)	78, 336, 618
MslI	CAYNNNNRTG	1 cut(s)	777
Msp20I	TGGCCA	2 cut(s)	657, 890
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	3 cut(s)	96, 520, 977
MspR9I	CCNGG	4 cut(s)	720, 756, 807, 938
MvaI	CCWGG	4 cut(s)	720, 756, 807, 938
MvnI	CGCG	2 cut(s)	146, 494
MwoI	GCNNNNNNNGC	4 cut(s)	14, 338, 443, 486
NdeII	GATC	7 cut(s)	69, 246, 349, 504, 685, 715, 832
NlaIII	CATG	5 cut(s)	270, 409, 540, 752, 928
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	2 cut(s)	227, 987
PceI	AGGCCT	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	3 cut(s)	305, 605, 905
PkrI	GCNGC	4 cut(s)	7, 259, 445, 496
PleI	GAGTC	3 cut(s)	70, 86, 452
PpsI	GAGTC	3 cut(s)	70, 86, 452
Psp6I	CCWGG	4 cut(s)	718, 754, 805, 936
PspGI	CCWGG	4 cut(s)	718, 754, 805, 936
PspN4I	GGNNCC	1 cut(s)	480
PspOMI	GGGCCC	1 cut(s)	478
PspPI	GGNCC	4 cut(s)	148, 478, 479, 968
PsuI	RGATCY	2 cut(s)	504, 832
RsaI	GTAC	3 cut(s)	312, 431, 753
RsaNI	GTAC	3 cut(s)	311, 430, 752
RseI	CAYNNNNRTG	1 cut(s)	777
SacII	CCGCGG	1 cut(s)	495
SaqAI	TTAA	3 cut(s)	78, 336, 618
SatI	GCNGC	4 cut(s)	6, 258, 444, 495
Sau3AI	GATC	7 cut(s)	69, 246, 349, 504, 685, 715, 832
Sau96I	GGNCC	4 cut(s)	148, 478, 479, 968
SchI	GAGTC	3 cut(s)	71, 86, 452
ScrFI	CCNGG	4 cut(s)	720, 756, 807, 938
SduI	GDGCHC	1 cut(s)	482
SfaNI	GCATC	3 cut(s)	4, 108, 781
SfcI	CTRYAG	1 cut(s)	1009
Sfr303I	CCGCGG	1 cut(s)	495
SgrBI	CCGCGG	1 cut(s)	495
SinI	GGWCC	2 cut(s)	148, 968
SmiMI	CAYNNNNRTG	1 cut(s)	777
Sse9I	AATT	5 cut(s)	53, 116, 234, 912, 1042
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	6 cut(s)	146, 258, 443, 492, 494, 497
SspI	AATATT	1 cut(s)	826
SspMI	CTAG	1 cut(s)	1108
StuI	AGGCCT	1 cut(s)	84
StyD4I	CCNGG	4 cut(s)	718, 754, 805, 936
StyI	CCWWGG	1 cut(s)	555
TaaI	ACNGT	6 cut(s)	227, 434, 571, 674, 733, 1024
TaiI	ACGT	2 cut(s)	326, 632
TaqI	TCGA	4 cut(s)	57, 65, 195, 315
TaqII	GACCGA	1 cut(s)	48
TasI	AATT	5 cut(s)	53, 116, 234, 912, 1042
TauI	GCSGC	3 cut(s)	260, 446, 497
TfiI	GAWTC	3 cut(s)	305, 605, 905
Tru1I	TTAA	3 cut(s)	78, 336, 618
Tru9I	TTAA	3 cut(s)	78, 336, 618
TscAI	CASTG	2 cut(s)	178, 665
TseFI	GTSAC	2 cut(s)	227, 987
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	227, 987
TspDTI	ATGAA	1 cut(s)	966
TspGWI	ACGGA	2 cut(s)	246, 1016
TspRI	CASTG	2 cut(s)	178, 665
VpaK11BI	GGWCC	2 cut(s)	148, 968
XapI	RAATTY	3 cut(s)	53, 912, 1042
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	1 cut(s)	1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.