Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006415

Physical Location & Seq

Genomic Coordinates Forward (+)

2461197 .. 2463352

Gene Structure 2156 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCAGCCAAAAATATTGATGCAACTCTGTACGACCGCATGAAGGAAGTGAAAGAATTCGACGAGTCAAAGATGGGAGTCAAGGGCCTCTCCGATTCTGGCATTACTTCCATCCCTCAATTTTTTATCCACGACCCTCAAACTTTGTCCGATCTCAAACCGCCGTACAAACACACCACCACCACCATCCCCACGATCGACCTTTCCCACATCAACTCCGCTGCCCACCGCCCCAAAATTGTTGACCAAGTGAAATCCGCAGCCAAAAACTTCGGTTTCTTCCAAGTCACCAACCATGGAGTGCCTGTTTCTGTTTTGGGCGAAACGGTCAACGCTGTCAAAGCGTTCCACGAGCAGCCCCATGAGGTCAAATCCAAATACTACAAGCGAGAGGAGGGAAAGGGAGTCATGTATGCTAGCAATAACGACTTGTACCGCACGACGGCTGCCAGCTGGCACGACTCACTACAAGTGTGGATGAGTCCGGAGAGGCCAGAGGTGGAGGAGATACCTGAGGCTTGTAGGGAAGAGGTGGTTGCATGGGATTTGCATGCAACCAAGGTAGCGGAGGACGTGATGGAGTTGCTTTCAGAAGGGTTAGGGTTGGAGGGAAGGAGATTTAAGGAGTTAACGTTTTCAGATAAGAGGGCGCTTTTGGGGCACTGCTATCCTTACTGTCCCCAGCCTGATCGGACTGTGGGGATTACGGCACATACTGATCCTGGGATTATAACAGGAAATGAGTGGCTGGATGTGAAGCCTGTGCCTGGAGGTTTAATTATTAACGTTGGAGACTTACTTCAGATAACCTCCAACGGGGAGTACACAAGTGTACAACACAGAGTGTTGGCAAACTCTTGGAAAGAAGCTCGGATCTCCGTCGTGATATTTTTCAACCTATCCAAATGGAGAGAAGATGGTTACTGTGGACCTCTTCCGGAGCTTTTGTCACCTGAGAAACCACCAGTTTATCGAGACTTCACTGCCCAAGAATTCCTTGAAAACTTCTATGGCAAAGGAATAGATACCAAGTCTCTGATTGAGAAAATCACTATAAAAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

355

Amino Acids

39.82

Weight (kDa)

5.78

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	63 - 162	3.1e-19	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	221 - 299	5.2e-16	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19280 FvH4_6g19280 FvH4_6g19281
malus_domestica	MD12G1028400.v1.1 MD12G1028500.v1.1 MD14G1028700.v1.1
prunus_persica	Prupe.7G102900_v2.0.a1 Prupe.7G103000_v2.0.a1
pyrus_communis	pycom12g02720 pycom12g02730 pycom14g02670 pycom14g02680
rosa_chinensis	RchiOBHm_Chr3g0474491
rosa_laevigata	RLG00000023917 RLG00000023927 RLG00000023928
rosa_multiflora	Rmu_sc0001353.1_g000045 Rmu_sc0039676.1_g000001
rosa_roxburghii	Rroxscaffold_6G00407120 Rroxscaffold_6G00407300
rosa_rugosa	Rorug03G0140600 Rorug03G0141100
rosa_samantha	Rh3AG192000 Rh3BG221500 Rh3CG216200 Rh3DG216900
rosa_wichuraiana	Rw3G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	731
AccIII	TCCGGA	2 cut(s)	484, 937
AciI	CCGC	7 cut(s)	37, 161, 219, 229, 258, 436, 566
AclI	AACGTT	2 cut(s)	632, 786
AclWI	GGATC	2 cut(s)	713, 881
AcsI	RAATTY	2 cut(s)	56, 992
AcuI	CTGAAG	1 cut(s)	785
AdeI	CACNNNGTG	1 cut(s)	844
AfaI	GTAC	5 cut(s)	32, 167, 434, 824, 834
AfiI	CCNNNNNNNGG	4 cut(s)	43, 442, 767, 816
AgsI	TTSAA	2 cut(s)	895, 1001
AjiI	CACGTC	1 cut(s)	574
AjnI	CCWGG	2 cut(s)	721, 766
AluBI	AGCT	3 cut(s)	453, 869, 943
AluI	AGCT	3 cut(s)	453, 869, 943
Alw26I	GTCTC	3 cut(s)	786, 969, 1038
AlwI	GGATC	2 cut(s)	713, 881
Aor13HI	TCCGGA	2 cut(s)	484, 937
AoxI	GGCC	2 cut(s)	85, 491
ApeKI	GCWGC	5 cut(s)	5, 221, 260, 355, 446
ApoI	RAATTY	2 cut(s)	56, 992
Asp700I	GAANNNNTTC	1 cut(s)	56
AspLEI	GCGC	1 cut(s)	652
AspS9I	GGNCC	2 cut(s)	85, 929
AsuHPI	GGTGA	2 cut(s)	280, 942
AsuNHI	GCTAGC	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	929
AxyI	CCTNAGG	1 cut(s)	513
BaeGI	GKGCMC	1 cut(s)	663
BauI	CACGAG	1 cut(s)	350
BbvI	GCAGC	5 cut(s)	17, 208, 272, 367, 433
BccI	CCATC	5 cut(s)	67, 119, 194, 571, 911
BceAI	ACGGC	3 cut(s)	148, 459, 723
BciT130I	CCWGG	2 cut(s)	723, 768
BcoDI	GTCTC	3 cut(s)	786, 969, 1038
BfaI	CTAG	1 cut(s)	417
BfoI	RGCGCY	1 cut(s)	653
BisI	GCNGC	5 cut(s)	6, 222, 261, 356, 447
BlsI	GCNGC	5 cut(s)	7, 223, 262, 357, 448
Bme1390I	CCNGG	2 cut(s)	723, 768
Bme18I	GGWCC	1 cut(s)	929
BmgBI	CACGTC	1 cut(s)	574
BmgT120I	GGNCC	2 cut(s)	85, 929
BmrFI	CCNGG	2 cut(s)	723, 768
BmsI	GCATC	1 cut(s)	10
BmtI	GCTAGC	1 cut(s)	420
BpmI	CTGGAG	1 cut(s)	789
BsaJI	CCNNGG	3 cut(s)	295, 558, 722
BsaWI	WCCGGW	2 cut(s)	484, 937
BsaXI	ACNNNNNCTCC	8 cut(s)	200, 230, 291, 321, 617, 647, 932, 962
Bsc4I	CCNNNNNNNGG	4 cut(s)	43, 442, 767, 816
Bse1I	ACTGG	1 cut(s)	965
Bse21I	CCTNAGG	1 cut(s)	513
BseAI	TCCGGA	2 cut(s)	484, 937
BseBI	CCWGG	2 cut(s)	723, 768
BseDI	CCNNGG	3 cut(s)	295, 558, 722
BseGI	GGATG	4 cut(s)	111, 186, 483, 757
BseLI	CCNNNNNNNGG	4 cut(s)	43, 442, 767, 816
BseMII	CTCAG	2 cut(s)	504, 945
BseNI	ACTGG	1 cut(s)	965
BseRI	GAGGAG	2 cut(s)	407, 518
BseSI	GKGCMC	1 cut(s)	663
BseXI	GCAGC	5 cut(s)	17, 208, 272, 367, 433
BseYI	CCCAGC	1 cut(s)	681
Bsh1285I	CGRYCG	2 cut(s)	37, 198
BshFI	GGCC	2 cut(s)	87, 493
BsiEI	CGRYCG	2 cut(s)	37, 198
BsiSI	CCGG	2 cut(s)	485, 938
BslFI	GGGAC	1 cut(s)	663
BslI	CCNNNNNNNGG	4 cut(s)	43, 442, 767, 816
BsmAI	GTCTC	3 cut(s)	786, 969, 1038
BsmFI	GGGAC	1 cut(s)	663
BsnI	GGCC	2 cut(s)	87, 493
Bsp1286I	GDGCHC	1 cut(s)	663
Bsp13I	TCCGGA	2 cut(s)	484, 937
Bsp1407I	TGTACA	1 cut(s)	832
Bsp143I	GATC	5 cut(s)	151, 195, 688, 718, 873
Bsp19I	CCATGG	1 cut(s)	295
BspACI	CCGC	7 cut(s)	37, 161, 219, 229, 258, 436, 566
BspANI	GGCC	2 cut(s)	87, 493
BspCNI	CTCAG	2 cut(s)	505, 946
BspEI	TCCGGA	2 cut(s)	484, 937
BspOI	GCTAGC	1 cut(s)	420
BspPI	GGATC	2 cut(s)	713, 881
BsrGI	TGTACA	1 cut(s)	832
BsrI	ACTGG	1 cut(s)	965
BssECI	CCNNGG	3 cut(s)	295, 558, 722
BssMI	GATC	5 cut(s)	151, 195, 688, 718, 873
BssSI	CACGAG	1 cut(s)	350
BssT1I	CCWWGG	2 cut(s)	295, 558
Bst2BI	CACGAG	1 cut(s)	350
Bst2UI	CCWGG	2 cut(s)	723, 768
Bst4CI	ACNGT	4 cut(s)	328, 677, 697, 926
Bst6I	CTCTTC	2 cut(s)	522, 939
BstAUI	TGTACA	1 cut(s)	832
BstC8I	GCNNGC	4 cut(s)	418, 451, 455, 552
BstDEI	CTNAG	2 cut(s)	513, 954
BstDSI	CCRYGG	1 cut(s)	295
BstF5I	GGATG	4 cut(s)	111, 186, 483, 757
BstH2I	RGCGCY	1 cut(s)	653
BstHHI	GCGC	1 cut(s)	652
BstKTI	GATC	5 cut(s)	154, 198, 691, 721, 876
BstMAI	GTCTC	3 cut(s)	786, 969, 1038
BstMBI	GATC	5 cut(s)	151, 195, 688, 718, 873
BstMCI	CGRYCG	2 cut(s)	37, 198
BstMWI	GCNNNNNNNGC	2 cut(s)	341, 658
BstNI	CCWGG	2 cut(s)	723, 768
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	2 cut(s)	721, 766
BstSLI	GKGCMC	1 cut(s)	663
BstV1I	GCAGC	5 cut(s)	17, 208, 272, 367, 433
BstX2I	RGATCY	1 cut(s)	873
BstYI	RGATCY	1 cut(s)	873
Bsu36I	CCTNAGG	1 cut(s)	513
BsuRI	GGCC	2 cut(s)	87, 493
BtgI	CCRYGG	1 cut(s)	295
BtrI	CACGTC	1 cut(s)	574
BtsCI	GGATG	4 cut(s)	111, 186, 483, 757
BtsI	GCAGTG	2 cut(s)	661, 981
BtsIMutI	CAGTG	2 cut(s)	661, 981
Cac8I	GCNNGC	4 cut(s)	418, 451, 455, 552
CfoI	GCGC	1 cut(s)	652
Cfr13I	GGNCC	2 cut(s)	85, 929
Csp6I	GTAC	5 cut(s)	31, 166, 433, 823, 833
CviAII	CATG	6 cut(s)	40, 296, 362, 409, 540, 551
CviQI	GTAC	5 cut(s)	31, 166, 433, 823, 833
DdeI	CTNAG	2 cut(s)	513, 954
DpnI	GATC	5 cut(s)	153, 197, 690, 720, 875
DpnII	GATC	5 cut(s)	151, 195, 688, 718, 873
DraIII	CACNNNGTG	1 cut(s)	844
Eam1104I	CTCTTC	2 cut(s)	522, 939
EarI	CTCTTC	2 cut(s)	522, 939
Eco130I	CCWWGG	2 cut(s)	295, 558
Eco47I	GGWCC	1 cut(s)	929
Eco57I	CTGAAG	1 cut(s)	785
Eco81I	CCTNAGG	1 cut(s)	513
EcoO109I	RGGNCCY	1 cut(s)	85
EcoRI	GAATTC	2 cut(s)	56, 992
EcoRII	CCWGG	2 cut(s)	721, 766
EcoT14I	CCWWGG	2 cut(s)	295, 558
ErhI	CCWWGG	2 cut(s)	295, 558
FaeI	CATG	6 cut(s)	43, 299, 365, 412, 543, 554
FalI	AAGNNNNNCTT	2 cut(s)	981, 1013
FaqI	GGGAC	1 cut(s)	663
FatI	CATG	6 cut(s)	39, 295, 361, 408, 539, 550
Fnu4HI	GCNGC	5 cut(s)	6, 222, 261, 356, 447
FokI	GGATG	4 cut(s)	98, 173, 490, 764
Fsp4HI	GCNGC	5 cut(s)	6, 222, 261, 356, 447
FspBI	CTAG	1 cut(s)	417
GlaI	GCGC	1 cut(s)	651
GluI	GCNGC	5 cut(s)	6, 222, 261, 356, 447
GsaI	CCCAGC	1 cut(s)	685
GsuI	CTGGAG	1 cut(s)	789
HaeII	RGCGCY	1 cut(s)	653
HaeIII	GGCC	2 cut(s)	87, 493
HapII	CCGG	2 cut(s)	485, 938
HhaI	GCGC	1 cut(s)	652
Hin1II	CATG	6 cut(s)	43, 299, 365, 412, 543, 554
Hin6I	GCGC	1 cut(s)	650
HinP1I	GCGC	1 cut(s)	650
HincII	GTYRAC	3 cut(s)	244, 331, 630
HindII	GTYRAC	3 cut(s)	244, 331, 630
HinfI	GANTC	6 cut(s)	65, 78, 95, 405, 461, 481
HpaI	GTTAAC	1 cut(s)	630
HpaII	CCGG	2 cut(s)	485, 938
HphI	GGTGA	2 cut(s)	280, 942
Hpy166II	GTNNAC	6 cut(s)	244, 331, 630, 825, 833, 929
Hpy188I	TCNGA	8 cut(s)	94, 151, 592, 640, 693, 804, 873, 1038
Hpy188III	TCNNGA	4 cut(s)	485, 883, 938, 974
Hpy8I	GTNNAC	6 cut(s)	244, 331, 630, 825, 833, 929
Hpy99I	CGWCG	3 cut(s)	65, 445, 884
HpyAV	CCTTC	3 cut(s)	37, 587, 606
HpyCH4III	ACNGT	4 cut(s)	328, 677, 697, 926
HpyCH4IV	ACGT	3 cut(s)	573, 632, 786
HpyCH4V	TGCA	4 cut(s)	23, 539, 550, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	341, 658
HpyF3I	CTNAG	2 cut(s)	513, 954
HpySE526I	ACGT	3 cut(s)	573, 632, 786
Hsp92II	CATG	6 cut(s)	43, 299, 365, 412, 543, 554
HspAI	GCGC	1 cut(s)	650
Kpn2I	TCCGGA	2 cut(s)	484, 937
KspAI	GTTAAC	1 cut(s)	630
Kzo9I	GATC	5 cut(s)	151, 195, 688, 718, 873
LmnI	GCTCC	1 cut(s)	940
Lsp1109I	GCAGC	5 cut(s)	17, 208, 272, 367, 433
LweI	GCATC	1 cut(s)	10
MaeI	CTAG	1 cut(s)	417
MaeII	ACGT	3 cut(s)	573, 632, 786
MaeIII	GTNAC	3 cut(s)	286, 920, 948
MalI	GATC	5 cut(s)	153, 197, 690, 720, 875
MboI	GATC	5 cut(s)	151, 195, 688, 718, 873
MboII	GAAGA	4 cut(s)	271, 539, 926, 926
MflI	RGATCY	1 cut(s)	873
MhlI	GDGCHC	1 cut(s)	663
MluCI	AATT	5 cut(s)	56, 119, 237, 777, 992
MlyI	GAGTC	5 cut(s)	74, 87, 414, 455, 490
MmeI	TCCRAC	3 cut(s)	585, 769, 837
MroI	TCCGGA	2 cut(s)	484, 937
MroXI	GAANNNNTTC	1 cut(s)	56
MseI	TTAA	4 cut(s)	621, 629, 776, 783
MspA1I	CMGCKG	2 cut(s)	221, 453
MspI	CCGG	2 cut(s)	485, 938
MspR9I	CCNGG	2 cut(s)	723, 768
MvaI	CCWGG	2 cut(s)	723, 768
MwoI	GCNNNNNNNGC	2 cut(s)	341, 658
NcoI	CCATGG	1 cut(s)	295
NdeII	GATC	5 cut(s)	151, 195, 688, 718, 873
NheI	GCTAGC	1 cut(s)	416
NlaIII	CATG	6 cut(s)	43, 299, 365, 412, 543, 554
NmuCI	GTSAC	2 cut(s)	286, 948
NspI	RCATGY	1 cut(s)	554
PaeI	GCATGC	1 cut(s)	554
PdmI	GAANNNNTTC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	95
PkrI	GCNGC	5 cut(s)	7, 223, 262, 357, 448
Ple19I	CGATCG	1 cut(s)	198
PleI	GAGTC	5 cut(s)	73, 86, 413, 455, 489
PpsI	GAGTC	5 cut(s)	73, 86, 413, 455, 489
PsiI	TTATAA	1 cut(s)	731
Psp1406I	AACGTT	2 cut(s)	632, 786
Psp6I	CCWGG	2 cut(s)	721, 766
PspFI	CCCAGC	1 cut(s)	681
PspGI	CCWGG	2 cut(s)	721, 766
PspPI	GGNCC	2 cut(s)	85, 929
PsuI	RGATCY	1 cut(s)	873
PvuI	CGATCG	1 cut(s)	198
PvuII	CAGCTG	1 cut(s)	453
RsaI	GTAC	5 cut(s)	32, 167, 434, 824, 834
RsaNI	GTAC	5 cut(s)	31, 166, 433, 823, 833
SaqAI	TTAA	4 cut(s)	621, 629, 776, 783
SatI	GCNGC	5 cut(s)	6, 222, 261, 356, 447
Sau3AI	GATC	5 cut(s)	151, 195, 688, 718, 873
Sau96I	GGNCC	2 cut(s)	85, 929
SchI	GAGTC	5 cut(s)	74, 87, 414, 455, 490
ScrFI	CCNGG	2 cut(s)	723, 768
SduI	GDGCHC	1 cut(s)	663
SfaNI	GCATC	1 cut(s)	10
SinI	GGWCC	1 cut(s)	929
SphI	GCATGC	1 cut(s)	554
Sse9I	AATT	5 cut(s)	56, 119, 237, 777, 992
SsiI	CCGC	7 cut(s)	37, 161, 219, 229, 258, 436, 566
SspI	AATATT	1 cut(s)	16
SspMI	CTAG	1 cut(s)	417
StyD4I	CCNGG	2 cut(s)	721, 766
StyI	CCWWGG	2 cut(s)	295, 558
TaaI	ACNGT	4 cut(s)	328, 677, 697, 926
TaiI	ACGT	3 cut(s)	576, 635, 789
TaqI	TCGA	3 cut(s)	60, 198, 973
TasI	AATT	5 cut(s)	56, 119, 237, 777, 992
TatI	WGTACW	2 cut(s)	822, 832
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	4 cut(s)	621, 629, 776, 783
Tru9I	TTAA	4 cut(s)	621, 629, 776, 783
TscAI	CASTG	2 cut(s)	668, 988
TseFI	GTSAC	2 cut(s)	286, 948
TseI	GCWGC	5 cut(s)	5, 221, 260, 355, 446
Tsp45I	GTSAC	2 cut(s)	286, 948
TspDTI	ATGAA	1 cut(s)	56
TspGWI	ACGGA	1 cut(s)	868
TspRI	CASTG	2 cut(s)	668, 988
VpaK11BI	GGWCC	1 cut(s)	929
XapI	RAATTY	2 cut(s)	56, 992
XceI	RCATGY	1 cut(s)	554
XmnI	GAANNNNTTC	1 cut(s)	56
XspI	CTAG	1 cut(s)	417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.