Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006415

Physical Location & Seq

Genomic Coordinates Reverse (-)

30134730 .. 30137441

Gene Structure 2712 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023927

Sequence Viewer

CDS Protein Promoter (2k)

Length: 822 bp

ATGGCCACAGCTGTTAGTGCCACTTCTTCAGCCTACGACAGGATGAAGGAGGTGAAAGAGTTCAACGAGTCTAAGATCGGAGTTAAAGGCCTCTCCGACTCCGGCATCACTTCGATCCCCCAATTCTTTGTCCACGACCCCCAAACCCTCTCCGACCTCAAACCCTCGTCCAAACGCACCGTCCCCGCCACTCTCCCCACCATCGACCTCTCTCATATTAACTCGGTTAATCTCCACCCCAAAATCATTGACCAGATCAAAGACGCCGCCAGGACATGGGGCTTCTTCCAAGTGATCAACCATGCCATGCCCGTCTCGGTAGTAGATCAGACGGTGAACGCCGTCAAAGCATTTCATGAGCAGCCCCACGAGGTGAAGGCCAGGTTCTACAAGGGAGAAGAGGGTCAGGGCTTCATGTACGCCAACAACAATGACCTGTACCGGACAAAGGCAGCCAGCTGGCACGACTCGTTTAACGTGTGGACGGGGCCGGAGCCGCCAGAGGTGGAGGAGCTTCTGGAGGTATGTAGAAATGAGGTGGTTGCATGGAAATGGTTGCATGGGATTTCCATGCAACTGGTGGCTGAGAGTGTGATGGATTTGCTTTCCGAAGGGTTAGGGTTAGAAGCTGGCAAGTTCAAGGAGCTTACGTTTTTGGAGAAGAGGGCGCTTGTGGGGCACTGCTATCCTTACTGGCCCCAGCCCGATTGGAATGTGGGGATTACGTCGCATACTGATCCGGGGATAGTGACAGTTCTGTTGCAAAACCATGTACCTGGGTTGCAAGTTAGGCATGAAGATGAGTGGGTGGACGTCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

274

Amino Acids

30.67

Weight (kDa)

5.51

Isoelectric Point (pI)

31.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	65 - 163	5.6e-19	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	224 - 272	1.3e-08	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19280 FvH4_6g19280 FvH4_6g19281
malus_domestica	MD12G1028400.v1.1 MD12G1028500.v1.1 MD14G1028700.v1.1
prunus_persica	Prupe.7G102900_v2.0.a1 Prupe.7G103000_v2.0.a1
pyrus_communis	pycom12g02720 pycom12g02730 pycom14g02670 pycom14g02680
rosa_chinensis	RchiOBHm_Chr3g0474491
rosa_laevigata	RLG00000023917 RLG00000023927 RLG00000023928
rosa_multiflora	Rmu_sc0001353.1_g000045 Rmu_sc0039676.1_g000001
rosa_roxburghii	Rroxscaffold_6G00407120 Rroxscaffold_6G00407300
rosa_rugosa	Rorug03G0140600 Rorug03G0141100
rosa_samantha	Rh3AG192000 Rh3BG221500 Rh3CG216200 Rh3DG216900
rosa_wichuraiana	Rw3G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	816
AccB7I	CCANNNNNTGG	1 cut(s)	276
AciI	CCGC	3 cut(s)	186, 267, 497
AclWI	GGATC	2 cut(s)	109, 731
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	12
AcyI	GRCGYC	2 cut(s)	264, 813
AdeI	CACNNNGTG	1 cut(s)	373
AfaI	GTAC	3 cut(s)	419, 440, 774
AfiI	CCNNNNNNNGG	3 cut(s)	39, 276, 448
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	2 cut(s)	64, 640
AjnI	CCWGG	3 cut(s)	269, 380, 775
AluBI	AGCT	5 cut(s)	11, 459, 514, 629, 646
AluI	AGCT	5 cut(s)	11, 459, 514, 629, 646
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	2 cut(s)	109, 731
AoxI	GGCC	5 cut(s)	3, 88, 378, 488, 695
ApeKI	GCWGC	2 cut(s)	361, 452
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
Asp700I	GAANNNNTTC	1 cut(s)	59
AspLEI	GCGC	1 cut(s)	670
AspS9I	GGNCC	2 cut(s)	488, 696
AsuC2I	CCSGG	1 cut(s)	741
AsuHPI	GGTGA	3 cut(s)	64, 346, 385
BaeGI	GKGCMC	1 cut(s)	681
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	1 cut(s)	368
BbvI	GCAGC	2 cut(s)	373, 464
BccI	CCATC	2 cut(s)	209, 589
BceAI	ACGGC	1 cut(s)	326
BciT130I	CCWGG	3 cut(s)	271, 382, 777
BclI	TGATCA	1 cut(s)	294
BcnI	CCSGG	1 cut(s)	741
BcoDI	GTCTC	1 cut(s)	319
BfoI	RGCGCY	1 cut(s)	671
BisI	GCNGC	4 cut(s)	267, 362, 453, 497
BlsI	GCNGC	4 cut(s)	268, 363, 454, 498
Bme1390I	CCNGG	4 cut(s)	271, 382, 741, 777
BmgT120I	GGNCC	2 cut(s)	488, 696
BmiI	GGNNCC	3 cut(s)	489, 495, 698
BmrFI	CCNGG	4 cut(s)	271, 382, 741, 777
BmsI	GCATC	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	539
BpuMI	CCSGG	1 cut(s)	741
BsaHI	GRCGYC	2 cut(s)	264, 813
BsaJI	CCNNGG	2 cut(s)	740, 776
BsaWI	WCCGGW	1 cut(s)	441
BsaXI	ACNNNNNCTCC	2 cut(s)	635, 665
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 276, 448
Bse1I	ACTGG	2 cut(s)	582, 698
BseBI	CCWGG	3 cut(s)	271, 382, 777
BseDI	CCNNGG	2 cut(s)	740, 776
BseGI	GGATG	1 cut(s)	48
BseLI	CCNNNNNNNGG	3 cut(s)	39, 276, 448
BseMII	CTCAG	1 cut(s)	576
BseNI	ACTGG	2 cut(s)	582, 698
BseRI	GAGGAG	1 cut(s)	524
BseSI	GKGCMC	1 cut(s)	681
BseXI	GCAGC	2 cut(s)	373, 464
BseYI	CCCAGC	1 cut(s)	699
BshFI	GGCC	5 cut(s)	5, 90, 380, 490, 697
BsiSI	CCGG	4 cut(s)	102, 442, 491, 740
BslFI	GGGAC	1 cut(s)	167
BslI	CCNNNNNNNGG	3 cut(s)	39, 276, 448
BsmAI	GTCTC	1 cut(s)	319
BsmBI	CGTCTC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	167
BsnI	GGCC	5 cut(s)	5, 90, 380, 490, 697
Bsp1286I	GDGCHC	1 cut(s)	681
Bsp143I	GATC	6 cut(s)	75, 114, 255, 294, 325, 736
BspACI	CCGC	3 cut(s)	186, 267, 497
BspANI	GGCC	5 cut(s)	5, 90, 380, 490, 697
BspCNI	CTCAG	1 cut(s)	577
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	3 cut(s)	489, 495, 698
BspPI	GGATC	2 cut(s)	109, 731
BsrI	ACTGG	2 cut(s)	582, 698
BssECI	CCNNGG	2 cut(s)	740, 776
BssMI	GATC	6 cut(s)	75, 114, 255, 294, 325, 736
BssNI	GRCGYC	2 cut(s)	264, 813
BssSI	CACGAG	1 cut(s)	368
Bst2BI	CACGAG	1 cut(s)	368
Bst2UI	CCWGG	3 cut(s)	271, 382, 777
Bst4CI	ACNGT	3 cut(s)	181, 334, 754
Bst6I	CTCTTC	2 cut(s)	393, 656
BstACI	GRCGYC	2 cut(s)	264, 813
BstC8I	GCNNGC	3 cut(s)	457, 461, 631
BstDEI	CTNAG	2 cut(s)	72, 585
BstENI	CCTNNNNNAGG	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	671
BstHHI	GCGC	1 cut(s)	670
BstKTI	GATC	6 cut(s)	78, 117, 258, 297, 328, 739
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	6 cut(s)	75, 114, 255, 294, 325, 736
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 347, 496, 676, 790
BstNI	CCWGG	3 cut(s)	271, 382, 777
BstSCI	CCNGG	4 cut(s)	269, 380, 739, 775
BstSLI	GKGCMC	1 cut(s)	681
BstV1I	GCAGC	2 cut(s)	373, 464
BstXI	CCANNNNNNTGG	2 cut(s)	577, 776
BsuRI	GGCC	5 cut(s)	5, 90, 380, 490, 697
BtsCI	GGATG	1 cut(s)	48
BtsI	GCAGTG	1 cut(s)	679
BtsIMutI	CAGTG	1 cut(s)	679
Cac8I	GCNNGC	3 cut(s)	457, 461, 631
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	1 cut(s)	670
Cfr13I	GGNCC	2 cut(s)	488, 696
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	3 cut(s)	418, 439, 773
CviQI	GTAC	3 cut(s)	418, 439, 773
DdeI	CTNAG	2 cut(s)	72, 585
DpnI	GATC	6 cut(s)	77, 116, 257, 296, 327, 738
DpnII	GATC	6 cut(s)	75, 114, 255, 294, 325, 736
DraIII	CACNNNGTG	1 cut(s)	373
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	393, 656
EarI	CTCTTC	2 cut(s)	393, 656
Eco147I	AGGCCT	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	12
EcoNI	CCTNNNNNAGG	1 cut(s)	37
EcoRII	CCWGG	3 cut(s)	269, 380, 775
Esp3I	CGTCTC	1 cut(s)	319
FaqI	GGGAC	1 cut(s)	167
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	294
Fnu4HI	GCNGC	4 cut(s)	267, 362, 453, 497
FokI	GGATG	1 cut(s)	55
Fsp4HI	GCNGC	4 cut(s)	267, 362, 453, 497
GlaI	GCGC	1 cut(s)	669
GluI	GCNGC	4 cut(s)	267, 362, 453, 497
GsaI	CCCAGC	1 cut(s)	703
GsuI	CTGGAG	1 cut(s)	539
HaeII	RGCGCY	1 cut(s)	671
HaeIII	GGCC	5 cut(s)	5, 90, 380, 490, 697
HapII	CCGG	4 cut(s)	102, 442, 491, 740
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	670
Hin1I	GRCGYC	2 cut(s)	264, 813
Hin6I	GCGC	1 cut(s)	668
HinP1I	GCGC	1 cut(s)	668
HinfI	GANTC	3 cut(s)	68, 98, 467
HpaII	CCGG	4 cut(s)	102, 442, 491, 740
HphI	GGTGA	3 cut(s)	64, 346, 385
Hpy166II	GTNNAC	4 cut(s)	133, 337, 483, 811
Hpy188I	TCNGA	5 cut(s)	80, 97, 154, 330, 610
Hpy188III	TCNNGA	2 cut(s)	356, 518
Hpy8I	GTNNAC	4 cut(s)	133, 337, 483, 811
Hpy99I	CGWCG	1 cut(s)	730
HpyAV	CCTTC	3 cut(s)	40, 370, 605
HpyCH4III	ACNGT	3 cut(s)	181, 334, 754
HpyCH4IV	ACGT	4 cut(s)	477, 650, 725, 813
HpyCH4V	TGCA	5 cut(s)	545, 559, 574, 763, 784
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 347, 496, 676, 790
HpyF3I	CTNAG	2 cut(s)	72, 585
HpySE526I	ACGT	4 cut(s)	477, 650, 725, 813
Hsp92I	GRCGYC	2 cut(s)	264, 813
HspAI	GCGC	1 cut(s)	668
Ksp22I	TGATCA	1 cut(s)	294
Kzo9I	GATC	6 cut(s)	75, 114, 255, 294, 325, 736
LmnI	GCTCC	3 cut(s)	493, 511, 643
Lsp1109I	GCAGC	2 cut(s)	373, 464
LweI	GCATC	1 cut(s)	114
MaeII	ACGT	4 cut(s)	477, 650, 725, 813
MaeIII	GTNAC	1 cut(s)	748
MalI	GATC	6 cut(s)	77, 116, 257, 296, 327, 738
MboI	GATC	6 cut(s)	75, 114, 255, 294, 325, 736
MboII	GAAGA	5 cut(s)	18, 277, 410, 673, 809
MhlI	GDGCHC	1 cut(s)	681
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	122, 817
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	77, 92, 461
MmeI	TCCRAC	2 cut(s)	120, 177
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	5 cut(s)	84, 219, 228, 474, 820
MslI	CAYNNNNRTG	2 cut(s)	550, 798
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	11, 459
MspI	CCGG	4 cut(s)	102, 442, 491, 740
MspR9I	CCNGG	4 cut(s)	271, 382, 741, 777
MvaI	CCWGG	3 cut(s)	271, 382, 777
MwoI	GCNNNNNNNGC	5 cut(s)	17, 347, 496, 676, 790
NciI	CCSGG	1 cut(s)	741
NdeII	GATC	6 cut(s)	75, 114, 255, 294, 325, 736
NlaIV	GGNNCC	3 cut(s)	489, 495, 698
NmuCI	GTSAC	1 cut(s)	748
PagI	TCATGA	1 cut(s)	355
PceI	AGGCCT	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	59
PflMI	CCANNNNNTGG	1 cut(s)	276
PkrI	GCNGC	4 cut(s)	268, 363, 454, 498
PleI	GAGTC	3 cut(s)	76, 92, 461
PpsI	GAGTC	3 cut(s)	76, 92, 461
Psp6I	CCWGG	3 cut(s)	269, 380, 775
PspFI	CCCAGC	1 cut(s)	699
PspGI	CCWGG	3 cut(s)	269, 380, 775
PspN4I	GGNNCC	3 cut(s)	489, 495, 698
PspPI	GGNCC	2 cut(s)	488, 696
PvuII	CAGCTG	2 cut(s)	11, 459
RsaI	GTAC	3 cut(s)	419, 440, 774
RsaNI	GTAC	3 cut(s)	418, 439, 773
RseI	CAYNNNNRTG	2 cut(s)	550, 798
SaqAI	TTAA	5 cut(s)	84, 219, 228, 474, 820
SatI	GCNGC	4 cut(s)	267, 362, 453, 497
Sau3AI	GATC	6 cut(s)	75, 114, 255, 294, 325, 736
Sau96I	GGNCC	2 cut(s)	488, 696
SchI	GAGTC	3 cut(s)	77, 92, 461
ScrFI	CCNGG	4 cut(s)	271, 382, 741, 777
SduI	GDGCHC	1 cut(s)	681
SfaNI	GCATC	1 cut(s)	114
SmiMI	CAYNNNNRTG	2 cut(s)	550, 798
Sse9I	AATT	2 cut(s)	122, 817
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	3 cut(s)	186, 267, 497
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	4 cut(s)	269, 380, 739, 775
TaaI	ACNGT	3 cut(s)	181, 334, 754
TaiI	ACGT	4 cut(s)	480, 653, 728, 816
TaqI	TCGA	2 cut(s)	113, 204
TasI	AATT	2 cut(s)	122, 817
TauI	GCSGC	2 cut(s)	269, 499
Tru1I	TTAA	5 cut(s)	84, 219, 228, 474, 820
Tru9I	TTAA	5 cut(s)	84, 219, 228, 474, 820
TscAI	CASTG	1 cut(s)	686
TseFI	GTSAC	1 cut(s)	748
TseI	GCWGC	2 cut(s)	361, 452
Tsp45I	GTSAC	1 cut(s)	748
TspDTI	ATGAA	4 cut(s)	59, 344, 403, 810
TspRI	CASTG	1 cut(s)	686
Van91I	CCANNNNNTGG	1 cut(s)	276
XagI	CCTNNNNNAGG	1 cut(s)	37
XcmI	CCANNNNNNNNNTGG	1 cut(s)	577
XmnI	GAANNNNTTC	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	814

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.