Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006415

Physical Location & Seq

Genomic Coordinates Forward (+)

2067720 .. 2069414

Gene Structure 1695 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g02680.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCAGCCAAAATTGATGCAACTTTGGGATCATACGACCGTATGAAGGAAGTGAAAGAATTCGACGAGTCGAAGATGGGAGTCAAGGGCCTCTCTGATTCTGGCATCATGACCATCCCTCGTATTTTCGTCCACGACCCTCAAACCTTATCCGACCTCAAACCCTCATCCAAAAACACCACAACCCCCATCCCCACCATCGACCTTTCTCACATCAATTCCCCCGCTCACCGCCACAAAATCGTTGACCAAGTGAAATCCGCCGCTAAAACCTTTGGCTTCTTCCATGTCATTAACCACGGTGTGCCTGTCTCCGTTTTGGATGAAACGGTCAACACTGTCAAAGCGTTCCATGAGCAGCCCCATGAAGACAGAGCCAAATACTACAAGAGAAATGAAGGAAAGGGAGTCATGTATGCTACCAATACCGACTTGTACCGCACATCGGCCGCAAGCTGGTGTGACTCACTACAAGTGTGGATGGCCCCGGAGAGGTTGAAGGCGGAGGAGATACCTGAGGTGTGTCGGGAAGGGGTGGTTGGATGGGATTTGCATGCAACTAAGGTGGCGGATGACGTGCTGGAGTTGCTTTCGGAAGGGTTAGGGTTGGAGCGAAGGAGGTTTAAGGAGTTAACGTTTTCAGATCAAAGGTTGCTGGTGGGGCATTGCTATCCTTATTGTCCCGAACCAGATCGGACGGTGGGGATTAAGGGGCATACTGATGGTTCGATTCTGACGGTTCTGTTGCGGAACCATGTTCCTGGGTTGCAAGTTAAGCATGAGAACGAGTGGCTGGATGTGGAACCTGTGCCTGGAGGTTTGATTATTAATGTTGGAGACATGCTACAGATAATCTCCAACGGGGAATATAAAAGTGTGGAACACAGGGTGTTGGCCAACTCTTGGAAAGAAGCTCGGATCTCTATTGTGATATTTTTCAGCCAAACCAAATGGAGAGAAGGTGGCTACTATGGACCTCTGCCGGAGCTTTTGTCACCTGAGAAACCATCAATCTATCGAGACTTCACTGAACAAGAATTACGGGAAAATTTCTACAGCAAAGGACTAGATAGCAAGTCTATGGTTGATAAACTCACAATAAAAAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

370

Amino Acids

41.72

Weight (kDa)

6.18

Isoelectric Point (pI)

36.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19280 FvH4_6g19280 FvH4_6g19281
malus_domestica	MD12G1028400.v1.1 MD12G1028500.v1.1 MD14G1028700.v1.1
prunus_persica	Prupe.7G102900_v2.0.a1 Prupe.7G103000_v2.0.a1
pyrus_communis	pycom12g02720 pycom12g02730 pycom14g02670 pycom14g02680
rosa_chinensis	RchiOBHm_Chr3g0474491
rosa_laevigata	RLG00000023917 RLG00000023927 RLG00000023928
rosa_multiflora	Rmu_sc0001353.1_g000045 Rmu_sc0039676.1_g000001
rosa_roxburghii	Rroxscaffold_6G00407120 Rroxscaffold_6G00407300
rosa_rugosa	Rorug03G0140600 Rorug03G0141100
rosa_samantha	Rh3AG192000 Rh3BG221500 Rh3CG216200 Rh3DG216900
rosa_wichuraiana	Rw3G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	903
AccBSI	CCGCTC	1 cut(s)	227
AciI	CCGC	9 cut(s)	225, 232, 261, 264, 439, 450, 503, 569, 748
AclI	AACGTT	1 cut(s)	635
AclWI	GGATC	2 cut(s)	37, 926
AcoI	YGGCCR	2 cut(s)	447, 894
AcsI	RAATTY	2 cut(s)	59, 1048
AdeI	CACNNNGTG	2 cut(s)	304, 889
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	6 cut(s)	46, 445, 456, 492, 812, 903
AgsI	TTSAA	1 cut(s)	499
AjiI	CACGTC	1 cut(s)	577
AjnI	CCWGG	2 cut(s)	760, 811
AjuI	GAANNNNNNNTTGG	2 cut(s)	522, 554
AluBI	AGCT	3 cut(s)	456, 914, 988
AluI	AGCT	3 cut(s)	456, 914, 988
Alw26I	GTCTC	3 cut(s)	316, 831, 1014
AlwI	GGATC	2 cut(s)	37, 926
AoxI	GGCC	4 cut(s)	88, 447, 483, 894
ApeKI	GCWGC	2 cut(s)	5, 358
ApoI	RAATTY	2 cut(s)	59, 1048
AseI	ATTAAT	1 cut(s)	828
Asp700I	GAANNNNTTC	1 cut(s)	59
AspS9I	GGNCC	3 cut(s)	88, 484, 974
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	2 cut(s)	221, 987
AvaII	GGWCC	1 cut(s)	974
AxyI	CCTNAGG	1 cut(s)	516
BalI	TGGCCA	1 cut(s)	896
BbsI	GAAGAC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	17, 370
BccI	CCATC	8 cut(s)	70, 122, 197, 206, 475, 537, 716, 1015
BciT130I	CCWGG	2 cut(s)	762, 813
BcnI	CCSGG	1 cut(s)	488
BcoDI	GTCTC	3 cut(s)	316, 831, 1014
BfaI	CTAG	1 cut(s)	1067
BfmI	CTRYAG	2 cut(s)	845, 1054
BisI	GCNGC	4 cut(s)	6, 264, 359, 450
BlsI	GCNGC	4 cut(s)	7, 265, 360, 451
Bme1390I	CCNGG	3 cut(s)	488, 762, 813
Bme18I	GGWCC	1 cut(s)	974
BmgBI	CACGTC	1 cut(s)	577
BmgT120I	GGNCC	3 cut(s)	88, 484, 974
BmiI	GGNNCC	3 cut(s)	486, 752, 804
BmrFI	CCNGG	3 cut(s)	488, 762, 813
BmsI	GCATC	2 cut(s)	7, 114
BpiI	GAAGAC	1 cut(s)	375
BpmI	CTGGAG	2 cut(s)	602, 834
BpuMI	CCSGG	1 cut(s)	488
BsaJI	CCNNGG	3 cut(s)	298, 486, 761
BsaXI	ACNNNNNCTCC	6 cut(s)	620, 650, 946, 976, 977, 1007
Bsc4I	CCNNNNNNNGG	6 cut(s)	46, 445, 456, 492, 812, 903
Bse21I	CCTNAGG	1 cut(s)	516
Bse3DI	GCAATG	1 cut(s)	664
BseBI	CCWGG	2 cut(s)	762, 813
BseDI	CCNNGG	3 cut(s)	298, 486, 761
BseGI	GGATG	8 cut(s)	114, 167, 189, 328, 486, 548, 577, 802
BseLI	CCNNNNNNNGG	6 cut(s)	46, 445, 456, 492, 812, 903
BseMI	GCAATG	1 cut(s)	664
BseMII	CTCAG	2 cut(s)	507, 990
BseRI	GAGGAG	1 cut(s)	521
BseX3I	CGGCCG	1 cut(s)	447
BseXI	GCAGC	2 cut(s)	17, 370
Bsh1285I	CGRYCG	2 cut(s)	40, 450
BshFI	GGCC	4 cut(s)	90, 449, 485, 896
BsiEI	CGRYCG	2 cut(s)	40, 450
BsiSI	CCGG	2 cut(s)	488, 983
BslFI	GGGAC	1 cut(s)	666
BslI	CCNNNNNNNGG	6 cut(s)	46, 445, 456, 492, 812, 903
BsmAI	GTCTC	3 cut(s)	316, 831, 1014
BsmFI	GGGAC	1 cut(s)	666
BsnI	GGCC	4 cut(s)	90, 449, 485, 896
Bsp143I	GATC	4 cut(s)	29, 643, 691, 918
BspACI	CCGC	9 cut(s)	225, 232, 261, 264, 439, 450, 503, 569, 748
BspANI	GGCC	4 cut(s)	90, 449, 485, 896
BspCNI	CTCAG	2 cut(s)	508, 991
BspHI	TCATGA	1 cut(s)	108
BspLI	GGNNCC	3 cut(s)	486, 752, 804
BspPI	GGATC	2 cut(s)	37, 926
BsrBI	CCGCTC	1 cut(s)	227
BsrDI	GCAATG	1 cut(s)	664
BssECI	CCNNGG	3 cut(s)	298, 486, 761
BssMI	GATC	4 cut(s)	29, 643, 691, 918
Bst2UI	CCWGG	2 cut(s)	762, 813
Bst4CI	ACNGT	6 cut(s)	41, 302, 331, 340, 700, 739
BstC8I	GCNNGC	2 cut(s)	454, 555
BstDEI	CTNAG	3 cut(s)	516, 561, 999
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	8 cut(s)	114, 167, 189, 328, 486, 548, 577, 802
BstKTI	GATC	4 cut(s)	32, 646, 694, 921
BstMAI	GTCTC	3 cut(s)	316, 831, 1014
BstMBI	GATC	4 cut(s)	29, 643, 691, 918
BstMCI	CGRYCG	2 cut(s)	40, 450
BstMWI	GCNNNNNNNGC	3 cut(s)	586, 661, 775
BstNI	CCWGG	2 cut(s)	762, 813
BstNSI	RCATGY	2 cut(s)	557, 844
BstSCI	CCNGG	3 cut(s)	486, 760, 811
BstSFI	CTRYAG	2 cut(s)	845, 1054
BstV1I	GCAGC	2 cut(s)	17, 370
BstV2I	GAAGAC	1 cut(s)	375
BstX2I	RGATCY	1 cut(s)	918
BstXI	CCANNNNNNTGG	1 cut(s)	761
BstYI	RGATCY	1 cut(s)	918
BstZI	CGGCCG	1 cut(s)	447
Bsu36I	CCTNAGG	1 cut(s)	516
BsuRI	GGCC	4 cut(s)	90, 449, 485, 896
BtgI	CCRYGG	1 cut(s)	298
BtrI	CACGTC	1 cut(s)	577
BtsCI	GGATG	8 cut(s)	114, 167, 189, 328, 486, 548, 577, 802
BtsIMutI	CAGTG	2 cut(s)	336, 1026
Cac8I	GCNNGC	2 cut(s)	454, 555
CciI	TCATGA	1 cut(s)	108
Cfr13I	GGNCC	3 cut(s)	88, 484, 974
Csp6I	GTAC	1 cut(s)	436
CspCI	CAANNNNNGTGG	2 cut(s)	546, 581
CviAII	CATG	9 cut(s)	109, 287, 353, 365, 412, 554, 755, 779, 841
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	3 cut(s)	516, 561, 999
DpnI	GATC	4 cut(s)	31, 645, 693, 920
DpnII	GATC	4 cut(s)	29, 643, 691, 918
DraIII	CACNNNGTG	2 cut(s)	304, 889
EaeI	YGGCCR	2 cut(s)	447, 894
EagI	CGGCCG	1 cut(s)	447
EciI	GGCGGA	3 cut(s)	250, 518, 584
EclXI	CGGCCG	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	974
Eco52I	CGGCCG	1 cut(s)	447
Eco81I	CCTNAGG	1 cut(s)	516
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRI	GAATTC	1 cut(s)	59
EcoRII	CCWGG	2 cut(s)	760, 811
FaeI	CATG	9 cut(s)	112, 290, 356, 368, 415, 557, 758, 782, 844
FaqI	GGGAC	1 cut(s)	666
FatI	CATG	9 cut(s)	108, 286, 352, 364, 411, 553, 754, 778, 840
FauI	CCCGC	1 cut(s)	232
Fnu4HI	GCNGC	4 cut(s)	6, 264, 359, 450
FokI	GGATG	8 cut(s)	101, 154, 176, 335, 493, 555, 584, 809
Fsp4HI	GCNGC	4 cut(s)	6, 264, 359, 450
FspBI	CTAG	1 cut(s)	1067
GluI	GCNGC	4 cut(s)	6, 264, 359, 450
GsuI	CTGGAG	2 cut(s)	602, 834
HaeIII	GGCC	4 cut(s)	90, 449, 485, 896
HapII	CCGG	2 cut(s)	488, 983
Hin1II	CATG	9 cut(s)	112, 290, 356, 368, 415, 557, 758, 782, 844
HincII	GTYRAC	3 cut(s)	247, 334, 633
HindII	GTYRAC	3 cut(s)	247, 334, 633
HinfI	GANTC	6 cut(s)	68, 81, 98, 408, 464, 730
HpaI	GTTAAC	1 cut(s)	633
HpaII	CCGG	2 cut(s)	488, 983
HphI	GGTGA	2 cut(s)	221, 987
Hpy166II	GTNNAC	4 cut(s)	133, 247, 334, 633
Hpy188I	TCNGA	7 cut(s)	97, 154, 595, 643, 696, 735, 918
Hpy188III	TCNNGA	4 cut(s)	109, 527, 683, 1019
Hpy8I	GTNNAC	4 cut(s)	133, 247, 334, 633
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	7 cut(s)	40, 392, 493, 524, 590, 609, 953
HpyCH4III	ACNGT	6 cut(s)	41, 302, 331, 340, 700, 739
HpyCH4IV	ACGT	2 cut(s)	576, 635
HpyCH4V	TGCA	4 cut(s)	20, 553, 557, 769
HpyF10VI	GCNNNNNNNGC	3 cut(s)	586, 661, 775
HpyF3I	CTNAG	3 cut(s)	516, 561, 999
HpySE526I	ACGT	2 cut(s)	576, 635
Hsp92II	CATG	9 cut(s)	112, 290, 356, 368, 415, 557, 758, 782, 844
KspAI	GTTAAC	1 cut(s)	633
Kzo9I	GATC	4 cut(s)	29, 643, 691, 918
LmnI	GCTCC	2 cut(s)	610, 985
Lsp1109I	GCAGC	2 cut(s)	17, 370
LweI	GCATC	2 cut(s)	7, 114
MaeI	CTAG	1 cut(s)	1067
MaeII	ACGT	2 cut(s)	576, 635
MaeIII	GTNAC	2 cut(s)	461, 993
MalI	GATC	4 cut(s)	31, 645, 693, 920
MbiI	CCGCTC	1 cut(s)	227
MboI	GATC	4 cut(s)	29, 643, 691, 918
MboII	GAAGA	3 cut(s)	85, 274, 380
MflI	RGATCY	1 cut(s)	918
MlsI	TGGCCA	1 cut(s)	896
MluCI	AATT	6 cut(s)	12, 59, 217, 1037, 1048, 1105
MluNI	TGGCCA	1 cut(s)	896
MlyI	GAGTC	4 cut(s)	77, 90, 417, 458
MmeI	TCCRAC	5 cut(s)	177, 520, 588, 814, 882
Mox20I	TGGCCA	1 cut(s)	896
MroXI	GAANNNNTTC	1 cut(s)	59
MscI	TGGCCA	1 cut(s)	896
MseI	TTAA	6 cut(s)	294, 624, 632, 708, 774, 828
MslI	CAYNNNNRTG	1 cut(s)	720
Msp20I	TGGCCA	1 cut(s)	896
MspI	CCGG	2 cut(s)	488, 983
MspR9I	CCNGG	3 cut(s)	488, 762, 813
MvaI	CCWGG	2 cut(s)	762, 813
MwoI	GCNNNNNNNGC	3 cut(s)	586, 661, 775
NciI	CCSGG	1 cut(s)	488
NdeII	GATC	4 cut(s)	29, 643, 691, 918
NlaIII	CATG	9 cut(s)	112, 290, 356, 368, 415, 557, 758, 782, 844
NlaIV	GGNNCC	3 cut(s)	486, 752, 804
NmuCI	GTSAC	2 cut(s)	461, 993
NspI	RCATGY	2 cut(s)	557, 844
PaeI	GCATGC	1 cut(s)	557
PagI	TCATGA	1 cut(s)	108
PdmI	GAANNNNTTC	1 cut(s)	59
PfeI	GAWTC	2 cut(s)	98, 730
PflMI	CCANNNNNTGG	1 cut(s)	903
PkrI	GCNGC	4 cut(s)	7, 265, 360, 451
PleI	GAGTC	4 cut(s)	76, 89, 416, 458
PpsI	GAGTC	4 cut(s)	76, 89, 416, 458
PshBI	ATTAAT	1 cut(s)	828
Psp1406I	AACGTT	1 cut(s)	635
Psp6I	CCWGG	2 cut(s)	760, 811
PspGI	CCWGG	2 cut(s)	760, 811
PspN4I	GGNNCC	3 cut(s)	486, 752, 804
PspPI	GGNCC	3 cut(s)	88, 484, 974
PsrI	GAACNNNNNNTAC	2 cut(s)	1023, 1055
PsuI	RGATCY	1 cut(s)	918
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	720
SaqAI	TTAA	6 cut(s)	294, 624, 632, 708, 774, 828
SatI	GCNGC	4 cut(s)	6, 264, 359, 450
Sau3AI	GATC	4 cut(s)	29, 643, 691, 918
Sau96I	GGNCC	3 cut(s)	88, 484, 974
SchI	GAGTC	4 cut(s)	77, 90, 417, 458
ScrFI	CCNGG	3 cut(s)	488, 762, 813
SfaNI	GCATC	2 cut(s)	7, 114
SfcI	CTRYAG	2 cut(s)	845, 1054
SinI	GGWCC	1 cut(s)	974
SmiMI	CAYNNNNRTG	1 cut(s)	720
SphI	GCATGC	1 cut(s)	557
Sse9I	AATT	6 cut(s)	12, 59, 217, 1037, 1048, 1105
SsiI	CCGC	9 cut(s)	225, 232, 261, 264, 439, 450, 503, 569, 748
SspMI	CTAG	1 cut(s)	1067
StyD4I	CCNGG	3 cut(s)	486, 760, 811
TaaI	ACNGT	6 cut(s)	41, 302, 331, 340, 700, 739
TaiI	ACGT	2 cut(s)	579, 638
TaqI	TCGA	5 cut(s)	63, 71, 201, 728, 1018
TasI	AATT	6 cut(s)	12, 59, 217, 1037, 1048, 1105
TauI	GCSGC	2 cut(s)	266, 452
TfiI	GAWTC	2 cut(s)	98, 730
Tru1I	TTAA	6 cut(s)	294, 624, 632, 708, 774, 828
Tru9I	TTAA	6 cut(s)	294, 624, 632, 708, 774, 828
TscAI	CASTG	2 cut(s)	343, 1033
TseFI	GTSAC	2 cut(s)	461, 993
TseI	GCWGC	2 cut(s)	5, 358
Tsp45I	GTSAC	2 cut(s)	461, 993
TspDTI	ATGAA	4 cut(s)	59, 339, 381, 411
TspGWI	ACGGA	1 cut(s)	304
TspRI	CASTG	2 cut(s)	343, 1033
Van91I	CCANNNNNTGG	1 cut(s)	903
VpaK11BI	GGWCC	1 cut(s)	974
VspI	ATTAAT	1 cut(s)	828
XapI	RAATTY	2 cut(s)	59, 1048
XceI	RCATGY	2 cut(s)	557, 844
XmnI	GAANNNNTTC	1 cut(s)	59
XspI	CTAG	1 cut(s)	1067

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.