Rh3DG216900

1-aminocyclopropane-1-carboxylate oxidase homolog

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
Physical Location & Seq
Forward (+)
20122532 .. 20124871
2340 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG216900.1

Sequence Viewer

Length: 1113 bp
ATGGCCACAGCTGTTAGTGCGACTTCTTCAGCCTACGACAGGATGAAGGAGGTGAAAGAGTTCGACGAGTCAAAGATCGGAGTTAAAGGCCTCTCCGACTCCGGCATCACTTCCATCCCCCAATTCTTTGTCCACGACCCCCAAACCCTCTCCGACCTCAAACCCTCGTCCAAACGCACCGTCCCCGCCCCGCTCCCCACCATCGACCTTTCTCACATCAACTCGGTTAATCTCCGCCCCGAAATCGTTGAACAGATCAAAGACGCCGCCAGGACATGGGGATTCTTCCAAGTGATCAACCACGGCATACCCTTCTCCGTAGTAGATCAGACGGTGAACGCCGTCAAAGCATTTCACGAGCAGCCCCACGAGGTGAAGGCCAAGTTCTACAAGCGAGAAGAGGGGAAGGGCTTCATGTACGCCAGCAACAATGACTTGTACCGCACAAAGGCGGCCAGCTGGCACGACTCTTTTAACCTGTGGACGGGCCCGGAGCCACCGGAGGTGGAGGAGCTTCCGGAGGTATGTAGAAATGAGGTGGTTGCATGGGATTTCCATGCAACCAAGGTGGCCGAGAGTGTGATGGAGTTGCTTTCCGAAGGGTTAGGGTTAGAAGCTGGCAAGTTCAAGGAGCTTACGTTTTTGGAGAAGAGGGCGCTTGTGGGACACTGCTATCCCTACTGTCCTCAGCCCGATCGGACGGTGGGGATTACGTCTCATACAGATCCTGGGATAGTGACAGTTCTGTTGCAAAACCATGTGCCTGGGTTGCAAGTTAGGCATGAGGATGAGTGGGTGGACGTCAAGGCTGTTCCTGGAGGTCTGATTATTAACGTTGGAGACATGCTTCAGATAATCACTAATGGGGAGTATAAAAGTGTGCAACATCGTGTGTTGGCAAACTCCTGGAAGGAAGCTCGAATTTCAATTGTGCTATTTTACAACCTAGCCAAATGGAGTGAAGATGGATACTGTGGACCTCTCCCAGAACTTTTGTCACCCGAGAAGCCACCAATCTATCGAAACTTCACGGAGAGAGAATTTGTGGAAAATTTTTATAGCAAAGGAATAGATAGCAAGTCTCTGATCGACAAAATCACAATACATAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

370

Amino Acids

41.64

Weight (kDa)

5.66

Isoelectric Point (pI)

36.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DIOX_N PF14226 65 - 164 3.3e-21 non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy PF03171 220 - 315 3.3e-29 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 804
AccB7I CCANNNNNTGG 1 cut(s) 276
AccBSI CCGCTC 1 cut(s) 193
AccIII TCCGGA 1 cut(s) 517
AciI CCGC 6 cut(s) 186, 191, 235, 267, 442, 452
AclI AACGTT 1 cut(s) 834
AclWI GGATC 1 cut(s) 719
AcoI YGGCCR 3 cut(s) 3, 453, 570
AcsI RAATTY 3 cut(s) 921, 1040, 1051
AcuI CTGAAG 2 cut(s) 12, 833
AcyI GRCGYC 2 cut(s) 264, 801
AdeI CACNNNGTG 1 cut(s) 373
AfaI GTAC 2 cut(s) 419, 440
AfiI CCNNNNNNNGG 4 cut(s) 39, 276, 448, 484
AgsI TTSAA 3 cut(s) 251, 628, 927
AjnI CCWGG 5 cut(s) 269, 727, 763, 814, 905
AluBI AGCT 6 cut(s) 11, 459, 514, 617, 634, 917
AluI AGCT 6 cut(s) 11, 459, 514, 617, 634, 917
Alw26I GTCTC 3 cut(s) 720, 834, 1086
AlwI GGATC 1 cut(s) 719
AlwNI CAGNNNCTG 1 cut(s) 728
Ama87I CYCGRG 1 cut(s) 1001
Aor13HI TCCGGA 1 cut(s) 517
AoxI GGCC 6 cut(s) 3, 88, 378, 453, 487, 570
ApaI GGGCCC 1 cut(s) 491
ApeKI GCWGC 1 cut(s) 361
ApoI RAATTY 3 cut(s) 921, 1040, 1051
ArsI GACNNNNNNTTYG 2 cut(s) 165, 197
Asp700I GAANNNNTTC 2 cut(s) 59, 410
AspLEI GCGC 1 cut(s) 658
AspS9I GGNCC 3 cut(s) 487, 488, 977
AsuC2I CCSGG 1 cut(s) 491
AsuHPI GGTGA 4 cut(s) 64, 346, 385, 990
AvaI CYCGRG 1 cut(s) 1001
AvaII GGWCC 1 cut(s) 977
BaeGI GKGCMC 1 cut(s) 491
BalI TGGCCA 1 cut(s) 5
BanII GRGCYC 1 cut(s) 491
BauI CACGAG 2 cut(s) 356, 368
BbvCI CCTCAGC 1 cut(s) 687
BbvI GCAGC 1 cut(s) 373
BccI CCATC 4 cut(s) 122, 209, 577, 959
BceAI ACGGC 2 cut(s) 319, 326
BciT130I CCWGG 5 cut(s) 271, 729, 765, 816, 907
BciVI GTATCC 1 cut(s) 962
BclI TGATCA 1 cut(s) 294
BcnI CCSGG 1 cut(s) 491
BcoDI GTCTC 3 cut(s) 720, 834, 1086
BfaI CTAG 1 cut(s) 947
BfoI RGCGCY 1 cut(s) 659
BfuI GTATCC 1 cut(s) 962
BisI GCNGC 3 cut(s) 267, 362, 453
BlsI GCNGC 3 cut(s) 268, 363, 454
Bme1390I CCNGG 6 cut(s) 271, 491, 729, 765, 816, 907
Bme18I GGWCC 1 cut(s) 977
BmeT110I CYCGRG 1 cut(s) 1001
BmgT120I GGNCC 3 cut(s) 487, 488, 977
BmiI GGNNCC 2 cut(s) 489, 495
BmrFI CCNGG 6 cut(s) 271, 491, 729, 765, 816, 907
BmsI GCATC 1 cut(s) 114
BpmI CTGGAG 1 cut(s) 837
Bpu10I CCTNAGC 1 cut(s) 687
BpuMI CCSGG 1 cut(s) 491
BsaHI GRCGYC 2 cut(s) 264, 801
BsaJI CCNNGG 4 cut(s) 301, 564, 728, 764
BsaWI WCCGGW 2 cut(s) 499, 517
BsaXI ACNNNNNCTCC 2 cut(s) 623, 653
Bsc4I CCNNNNNNNGG 4 cut(s) 39, 276, 448, 484
BseAI TCCGGA 1 cut(s) 517
BseBI CCWGG 5 cut(s) 271, 729, 765, 816, 907
BseDI CCNNGG 4 cut(s) 301, 564, 728, 764
BseGI GGATG 3 cut(s) 48, 114, 793
BseLI CCNNNNNNNGG 4 cut(s) 39, 276, 448, 484
BseMII CTCAG 1 cut(s) 701
BseRI GAGGAG 1 cut(s) 524
BseSI GKGCMC 1 cut(s) 491
BseXI GCAGC 1 cut(s) 373
Bsh1285I CGRYCG 1 cut(s) 697
BshFI GGCC 6 cut(s) 5, 90, 380, 455, 489, 572
BsiEI CGRYCG 1 cut(s) 697
BsiHKCI CYCGRG 1 cut(s) 1001
BsiSI CCGG 4 cut(s) 102, 491, 500, 518
BslFI GGGAC 2 cut(s) 167, 678
BslI CCNNNNNNNGG 4 cut(s) 39, 276, 448, 484
BsmAI GTCTC 3 cut(s) 720, 834, 1086
BsmBI CGTCTC 1 cut(s) 720
BsmFI GGGAC 2 cut(s) 167, 678
BsnI GGCC 6 cut(s) 5, 90, 380, 455, 489, 572
BsoBI CYCGRG 1 cut(s) 1001
Bsp120I GGGCCC 1 cut(s) 487
Bsp1286I GDGCHC 1 cut(s) 491
Bsp13I TCCGGA 1 cut(s) 517
Bsp143I GATC 7 cut(s) 75, 255, 294, 325, 694, 724, 1086
BspACI CCGC 6 cut(s) 186, 191, 235, 267, 442, 452
BspANI GGCC 6 cut(s) 5, 90, 380, 455, 489, 572
BspCNI CTCAG 1 cut(s) 700
BspEI TCCGGA 1 cut(s) 517
BspLI GGNNCC 2 cut(s) 489, 495
BspPI GGATC 1 cut(s) 719
BsrBI CCGCTC 1 cut(s) 193
BssECI CCNNGG 4 cut(s) 301, 564, 728, 764
BssMI GATC 7 cut(s) 75, 255, 294, 325, 694, 724, 1086
BssNI GRCGYC 2 cut(s) 264, 801
BssSI CACGAG 2 cut(s) 356, 368
BssT1I CCWWGG 1 cut(s) 564
Bst2BI CACGAG 2 cut(s) 356, 368
Bst2UI CCWGG 5 cut(s) 271, 729, 765, 816, 907
Bst4CI ACNGT 6 cut(s) 181, 334, 683, 703, 742, 974
Bst6I CTCTTC 2 cut(s) 393, 644
BstACI GRCGYC 2 cut(s) 264, 801
BstC8I GCNNGC 4 cut(s) 424, 457, 461, 619
BstDEI CTNAG 1 cut(s) 687
BstDSI CCRYGG 1 cut(s) 301
BstENI CCTNNNNNAGG 1 cut(s) 37
BstF5I GGATG 3 cut(s) 48, 114, 793
BstH2I RGCGCY 1 cut(s) 659
BstHHI GCGC 1 cut(s) 658
BstKTI GATC 7 cut(s) 78, 258, 297, 328, 697, 727, 1089
BstMAI GTCTC 3 cut(s) 720, 834, 1086
BstMBI GATC 7 cut(s) 75, 255, 294, 325, 694, 724, 1086
BstMCI CGRYCG 1 cut(s) 697
BstMWI GCNNNNNNNGC 4 cut(s) 17, 347, 769, 778
BstNI CCWGG 5 cut(s) 271, 729, 765, 816, 907
BstNSI RCATGY 1 cut(s) 847
BstSCI CCNGG 6 cut(s) 269, 489, 727, 763, 814, 905
BstSLI GKGCMC 1 cut(s) 491
BstV1I GCAGC 1 cut(s) 373
BstX2I RGATCY 1 cut(s) 724
BstXI CCANNNNNNTGG 1 cut(s) 764
BstYI RGATCY 1 cut(s) 724
BsuI GTATCC 1 cut(s) 962
BsuRI GGCC 6 cut(s) 5, 90, 380, 455, 489, 572
BtgI CCRYGG 1 cut(s) 301
BtsCI GGATG 3 cut(s) 48, 114, 793
BtsI GCAGTG 1 cut(s) 667
BtsIMutI CAGTG 1 cut(s) 667
Cac8I GCNNGC 4 cut(s) 424, 457, 461, 619
CaiI CAGNNNCTG 1 cut(s) 728
CfoI GCGC 1 cut(s) 658
Cfr13I GGNCC 3 cut(s) 487, 488, 977
CseI GACGC 1 cut(s) 272
Csp6I GTAC 2 cut(s) 418, 439
CspCI CAANNNNNGTGG 2 cut(s) 549, 584
CviAII CATG 7 cut(s) 276, 415, 546, 557, 758, 782, 844
CviQI GTAC 2 cut(s) 418, 439
DdeI CTNAG 1 cut(s) 687
DpnI GATC 7 cut(s) 77, 257, 296, 327, 696, 726, 1088
DpnII GATC 7 cut(s) 75, 255, 294, 325, 694, 724, 1086
DraIII CACNNNGTG 1 cut(s) 373
EaeI YGGCCR 3 cut(s) 3, 453, 570
Eam1104I CTCTTC 2 cut(s) 393, 644
EarI CTCTTC 2 cut(s) 393, 644
EciI GGCGGA 1 cut(s) 224
Eco130I CCWWGG 1 cut(s) 564
Eco147I AGGCCT 1 cut(s) 90
Eco24I GRGCYC 1 cut(s) 491
Eco47I GGWCC 1 cut(s) 977
Eco57I CTGAAG 2 cut(s) 12, 833
Eco88I CYCGRG 1 cut(s) 1001
EcoNI CCTNNNNNAGG 1 cut(s) 37
EcoRII CCWGG 5 cut(s) 269, 727, 763, 814, 905
EcoT14I CCWWGG 1 cut(s) 564
EcoT38I GRGCYC 1 cut(s) 491
ErhI CCWWGG 1 cut(s) 564
Esp3I CGTCTC 1 cut(s) 720
FaeI CATG 7 cut(s) 279, 418, 549, 560, 761, 785, 847
FaqI GGGAC 2 cut(s) 167, 678
FatI CATG 7 cut(s) 275, 414, 545, 556, 757, 781, 843
FauI CCCGC 2 cut(s) 193, 198
FbaI TGATCA 1 cut(s) 294
Fnu4HI GCNGC 3 cut(s) 267, 362, 453
FokI GGATG 3 cut(s) 55, 101, 800
FriOI GRGCYC 1 cut(s) 491
Fsp4HI GCNGC 3 cut(s) 267, 362, 453
FspBI CTAG 1 cut(s) 947
GlaI GCGC 1 cut(s) 657
GluI GCNGC 3 cut(s) 267, 362, 453
GsuI CTGGAG 1 cut(s) 837
HaeII RGCGCY 1 cut(s) 659
HaeIII GGCC 6 cut(s) 5, 90, 380, 455, 489, 572
HapII CCGG 4 cut(s) 102, 491, 500, 518
HgaI GACGC 1 cut(s) 272
HhaI GCGC 1 cut(s) 658
Hin1I GRCGYC 2 cut(s) 264, 801
Hin1II CATG 7 cut(s) 279, 418, 549, 560, 761, 785, 847
Hin6I GCGC 1 cut(s) 656
HinP1I GCGC 1 cut(s) 656
HinfI GANTC 4 cut(s) 68, 98, 282, 467
HpaII CCGG 4 cut(s) 102, 491, 500, 518
HphI GGTGA 4 cut(s) 64, 346, 385, 990
Hpy166II GTNNAC 5 cut(s) 133, 337, 483, 799, 977
Hpy188I TCNGA 9 cut(s) 80, 97, 154, 330, 598, 699, 825, 852, 1086
Hpy188III TCNNGA 2 cut(s) 356, 518
Hpy8I GTNNAC 5 cut(s) 133, 337, 483, 799, 977
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 6 cut(s) 40, 322, 370, 400, 593, 904
HpyCH4III ACNGT 6 cut(s) 181, 334, 683, 703, 742, 974
HpyCH4IV ACGT 4 cut(s) 638, 713, 801, 834
HpyCH4V TGCA 5 cut(s) 545, 560, 751, 772, 883
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 347, 769, 778
HpyF3I CTNAG 1 cut(s) 687
HpySE526I ACGT 4 cut(s) 638, 713, 801, 834
Hsp92I GRCGYC 2 cut(s) 264, 801
Hsp92II CATG 7 cut(s) 279, 418, 549, 560, 761, 785, 847
HspAI GCGC 1 cut(s) 656
Kpn2I TCCGGA 1 cut(s) 517
Ksp22I TGATCA 1 cut(s) 294
Kzo9I GATC 7 cut(s) 75, 255, 294, 325, 694, 724, 1086
LmnI GCTCC 4 cut(s) 198, 493, 511, 631
Lsp1109I GCAGC 1 cut(s) 373
LweI GCATC 1 cut(s) 114
MaeI CTAG 1 cut(s) 947
MaeII ACGT 4 cut(s) 638, 713, 801, 834
MaeIII GTNAC 2 cut(s) 736, 996
MalI GATC 7 cut(s) 77, 257, 296, 327, 696, 726, 1088
MbiI CCGCTC 1 cut(s) 193
MboI GATC 7 cut(s) 75, 255, 294, 325, 694, 724, 1086
MboII GAAGA 5 cut(s) 18, 277, 410, 661, 974
MfeI CAATTG 1 cut(s) 927
MflI RGATCY 1 cut(s) 724
MhlI GDGCHC 1 cut(s) 491
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 5 cut(s) 122, 921, 927, 1040, 1051
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 3 cut(s) 77, 92, 461
MmeI TCCRAC 3 cut(s) 120, 177, 817
Mox20I TGGCCA 1 cut(s) 5
MroI TCCGGA 1 cut(s) 517
MroXI GAANNNNTTC 2 cut(s) 59, 410
MscI TGGCCA 1 cut(s) 5
MseI TTAA 4 cut(s) 84, 228, 474, 831
MslI CAYNNNNRTG 1 cut(s) 786
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 2 cut(s) 11, 459
MspI CCGG 4 cut(s) 102, 491, 500, 518
MspR9I CCNGG 6 cut(s) 271, 491, 729, 765, 816, 907
MunI CAATTG 1 cut(s) 927
MvaI CCWGG 5 cut(s) 271, 729, 765, 816, 907
MwoI GCNNNNNNNGC 4 cut(s) 17, 347, 769, 778
NciI CCSGG 1 cut(s) 491
NdeII GATC 7 cut(s) 75, 255, 294, 325, 694, 724, 1086
NlaIII CATG 7 cut(s) 279, 418, 549, 560, 761, 785, 847
NlaIV GGNNCC 2 cut(s) 489, 495
NmeAIII GCCGAG 1 cut(s) 598
NmuCI GTSAC 2 cut(s) 736, 996
NspI RCATGY 1 cut(s) 847
PceI AGGCCT 1 cut(s) 90
PdmI GAANNNNTTC 2 cut(s) 59, 410
PfeI GAWTC 1 cut(s) 282
PflMI CCANNNNNTGG 1 cut(s) 276
PfoI TCCNGGA 2 cut(s) 814, 905
PkrI GCNGC 3 cut(s) 268, 363, 454
Ple19I CGATCG 1 cut(s) 697
PleI GAGTC 3 cut(s) 76, 92, 461
PpsI GAGTC 3 cut(s) 76, 92, 461
Psp1406I AACGTT 1 cut(s) 834
Psp6I CCWGG 5 cut(s) 269, 727, 763, 814, 905
PspGI CCWGG 5 cut(s) 269, 727, 763, 814, 905
PspN4I GGNNCC 2 cut(s) 489, 495
PspOMI GGGCCC 1 cut(s) 487
PspPI GGNCC 3 cut(s) 487, 488, 977
PstNI CAGNNNCTG 1 cut(s) 728
PsuI RGATCY 1 cut(s) 724
PvuI CGATCG 1 cut(s) 697
PvuII CAGCTG 2 cut(s) 11, 459
RsaI GTAC 2 cut(s) 419, 440
RsaNI GTAC 2 cut(s) 418, 439
RseI CAYNNNNRTG 1 cut(s) 786
SaqAI TTAA 4 cut(s) 84, 228, 474, 831
SatI GCNGC 3 cut(s) 267, 362, 453
Sau3AI GATC 7 cut(s) 75, 255, 294, 325, 694, 724, 1086
Sau96I GGNCC 3 cut(s) 487, 488, 977
SchI GAGTC 3 cut(s) 77, 92, 461
ScrFI CCNGG 6 cut(s) 271, 491, 729, 765, 816, 907
SduI GDGCHC 1 cut(s) 491
SfaNI GCATC 1 cut(s) 114
SinI GGWCC 1 cut(s) 977
SmiMI CAYNNNNRTG 1 cut(s) 786
Sse9I AATT 5 cut(s) 122, 921, 927, 1040, 1051
SseBI AGGCCT 1 cut(s) 90
SsiI CCGC 6 cut(s) 186, 191, 235, 267, 442, 452
SspMI CTAG 1 cut(s) 947
StuI AGGCCT 1 cut(s) 90
StyD4I CCNGG 6 cut(s) 269, 489, 727, 763, 814, 905
StyI CCWWGG 1 cut(s) 564
TaaI ACNGT 6 cut(s) 181, 334, 683, 703, 742, 974
TaiI ACGT 4 cut(s) 641, 716, 804, 837
TaqI TCGA 5 cut(s) 63, 204, 919, 1021, 1089
TasI AATT 5 cut(s) 122, 921, 927, 1040, 1051
TauI GCSGC 2 cut(s) 269, 455
TfiI GAWTC 1 cut(s) 282
Tru1I TTAA 4 cut(s) 84, 228, 474, 831
Tru9I TTAA 4 cut(s) 84, 228, 474, 831
TscAI CASTG 1 cut(s) 674
TseFI GTSAC 2 cut(s) 736, 996
TseI GCWGC 1 cut(s) 361
Tsp45I GTSAC 2 cut(s) 736, 996
TspDTI ATGAA 2 cut(s) 59, 403
TspGWI ACGGA 2 cut(s) 307, 1046
TspRI CASTG 1 cut(s) 674
Van91I CCANNNNNTGG 1 cut(s) 276
VpaK11BI GGWCC 1 cut(s) 977
XagI CCTNNNNNAGG 1 cut(s) 37
XapI RAATTY 3 cut(s) 921, 1040, 1051
XceI RCATGY 1 cut(s) 847
XmnI GAANNNNTTC 2 cut(s) 59, 410
XspI CTAG 1 cut(s) 947
ZraI GACGTC 1 cut(s) 802
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.