Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006415

Physical Location & Seq

Genomic Coordinates Reverse (-)

29689813 .. 29691679

Gene Structure 1867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGCCACAGCTGTTAGTGCAACTTCTTCAGCCTACGACAGGATGAAGGAGGTGAAAGAGTTTGACGAGTCAAAGATCGGAGTTAAAGGCCTCTCCGACTCCGGCATCACTTCCATCCCCCAATTCTTTGTCCACGACCCCCAAACCCTCTCCGACCTCAAACCCTCGTCCAAACGCACCGTCCCCGCCACGCTCCCCACCATCGACCTTTCTCACATCAACTCGGTTAATCTCCACCCCGAAATCGTTGAACAGATCAAAGACGCCGCCAGGACATGGGGATTCTTCCAAGTGATCAACCACGGCATACCCATCTCCGTAGTAGATCAGACGGTGAACGCCGTCAAAGCATTTCACGAGCAGCCCCACGAGGTGAAGGCCAAGTTCTACAAGCGAGAAGAGGGGAAGGGCTTCATGTACGCCAGCAACAATGACTTGTACCGCACAAAGGCGGCCAGCTGGCACGACTCGTTTAACGTGTGGACGGGGCCGGAGCCACCGGAGGTGGAGGAGCTTCCGGAGGTATGTAGAAATGAGGTGGTTGCATGGGATTTCCATGCAACCAAGGTGGCCGAGAGTGTGATGGAGTTGCTTTCCGAAGGGTTAGGGTTAGAAGCTGGCAAGTTCAAGGAGCTTACGTTTTCGGAGAAGAGGGCGCTTGTGGGACACTGCTATCCCTACTGCCCTCAGCCCGATCGGACGGTGGGGATTACGTCGCATACAGATCCTGGGATAGTGACAGTTCTGTTGCAAAACCATGTGCCTGGGTTGCAAGTTAGGCATGAAGATGAGTGGGTGGACGTCAAGGCTGTTCCTGGAGGTCTGATTATTAATGTTGGAGACATGCTTCAGATAGTCTCTAATGGGGAGTATAAAAGTGTGCAACATCGTGTGTTGGCAAACTCCTGGAAGGAAGCTCGAATTTCAATTGTGATATTTTACAACCTAGCCAAATGGAGTGAAGATGGATACTGTGGACCTCTCCCAGAACTTTTGTCACCCGAGAAGCCACCAATCTATCGAAACTTCACGGAGAGAGAATTTGTGGAAAATTTTTATGGCAAAGGAATAGATAGCAAGTCTCTGATCGACAAAATCACAATACATAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

370

Amino Acids

41.49

Weight (kDa)

5.63

Isoelectric Point (pI)

33.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	65 - 163	7.9e-21	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	220 - 315	9.8e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19280 FvH4_6g19280 FvH4_6g19281
malus_domestica	MD12G1028400.v1.1 MD12G1028500.v1.1 MD14G1028700.v1.1
prunus_persica	Prupe.7G102900_v2.0.a1 Prupe.7G103000_v2.0.a1
pyrus_communis	pycom12g02720 pycom12g02730 pycom14g02670 pycom14g02680
rosa_chinensis	RchiOBHm_Chr3g0474491
rosa_laevigata	RLG00000023917 RLG00000023927 RLG00000023928
rosa_multiflora	Rmu_sc0001353.1_g000045 Rmu_sc0039676.1_g000001
rosa_roxburghii	Rroxscaffold_6G00407120 Rroxscaffold_6G00407300
rosa_rugosa	Rorug03G0140600 Rorug03G0141100
rosa_samantha	Rh3AG192000 Rh3BG221500 Rh3CG216200 Rh3DG216900
rosa_wichuraiana	Rw3G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	804
AccB7I	CCANNNNNTGG	1 cut(s)	276
AccIII	TCCGGA	1 cut(s)	517
AciI	CCGC	4 cut(s)	186, 267, 442, 452
AclWI	GGATC	1 cut(s)	719
AcoI	YGGCCR	3 cut(s)	3, 453, 570
AcsI	RAATTY	3 cut(s)	921, 1040, 1051
AcuI	CTGAAG	2 cut(s)	12, 833
AcyI	GRCGYC	2 cut(s)	264, 801
AdeI	CACNNNGTG	1 cut(s)	373
AfaI	GTAC	2 cut(s)	419, 440
AfiI	CCNNNNNNNGG	3 cut(s)	39, 276, 448
AflIII	ACRYGT	1 cut(s)	477
AgsI	TTSAA	3 cut(s)	251, 628, 927
AjnI	CCWGG	5 cut(s)	269, 727, 763, 814, 905
AluBI	AGCT	6 cut(s)	11, 459, 514, 617, 634, 917
AluI	AGCT	6 cut(s)	11, 459, 514, 617, 634, 917
Alw26I	GTCTC	3 cut(s)	834, 862, 1086
AlwI	GGATC	1 cut(s)	719
AlwNI	CAGNNNCTG	1 cut(s)	728
Ama87I	CYCGRG	1 cut(s)	1001
Aor13HI	TCCGGA	1 cut(s)	517
AoxI	GGCC	6 cut(s)	3, 88, 378, 453, 488, 570
ApeKI	GCWGC	1 cut(s)	361
ApoI	RAATTY	3 cut(s)	921, 1040, 1051
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
AseI	ATTAAT	1 cut(s)	831
Asp700I	GAANNNNTTC	1 cut(s)	410
AspLEI	GCGC	1 cut(s)	658
AspS9I	GGNCC	2 cut(s)	488, 977
AsuHPI	GGTGA	4 cut(s)	64, 346, 385, 990
AvaI	CYCGRG	1 cut(s)	1001
AvaII	GGWCC	1 cut(s)	977
BalI	TGGCCA	1 cut(s)	5
BauI	CACGAG	2 cut(s)	356, 368
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	1 cut(s)	373
BccI	CCATC	5 cut(s)	122, 209, 320, 577, 959
BceAI	ACGGC	2 cut(s)	319, 326
BciT130I	CCWGG	5 cut(s)	271, 729, 765, 816, 907
BciVI	GTATCC	1 cut(s)	962
BclI	TGATCA	1 cut(s)	294
BcoDI	GTCTC	3 cut(s)	834, 862, 1086
BfaI	CTAG	1 cut(s)	947
BfoI	RGCGCY	1 cut(s)	659
BfuI	GTATCC	1 cut(s)	962
BisI	GCNGC	3 cut(s)	267, 362, 453
BlsI	GCNGC	3 cut(s)	268, 363, 454
Bme1390I	CCNGG	5 cut(s)	271, 729, 765, 816, 907
Bme18I	GGWCC	1 cut(s)	977
BmeT110I	CYCGRG	1 cut(s)	1001
BmgT120I	GGNCC	2 cut(s)	488, 977
BmiI	GGNNCC	2 cut(s)	489, 495
BmrFI	CCNGG	5 cut(s)	271, 729, 765, 816, 907
BmsI	GCATC	1 cut(s)	114
BpmI	CTGGAG	1 cut(s)	837
Bpu10I	CCTNAGC	1 cut(s)	687
BsaHI	GRCGYC	2 cut(s)	264, 801
BsaJI	CCNNGG	4 cut(s)	301, 564, 728, 764
BsaWI	WCCGGW	2 cut(s)	499, 517
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	3 cut(s)	39, 276, 448
BseAI	TCCGGA	1 cut(s)	517
BseBI	CCWGG	5 cut(s)	271, 729, 765, 816, 907
BseDI	CCNNGG	4 cut(s)	301, 564, 728, 764
BseGI	GGATG	2 cut(s)	48, 114
BseLI	CCNNNNNNNGG	3 cut(s)	39, 276, 448
BseMII	CTCAG	1 cut(s)	701
BseRI	GAGGAG	1 cut(s)	524
BseXI	GCAGC	1 cut(s)	373
Bsh1285I	CGRYCG	1 cut(s)	697
BshFI	GGCC	6 cut(s)	5, 90, 380, 455, 490, 572
BsiEI	CGRYCG	1 cut(s)	697
BsiHKCI	CYCGRG	1 cut(s)	1001
BsiSI	CCGG	4 cut(s)	102, 491, 500, 518
BslFI	GGGAC	2 cut(s)	167, 678
BslI	CCNNNNNNNGG	3 cut(s)	39, 276, 448
BsmAI	GTCTC	3 cut(s)	834, 862, 1086
BsmFI	GGGAC	2 cut(s)	167, 678
BsnI	GGCC	6 cut(s)	5, 90, 380, 455, 490, 572
BsoBI	CYCGRG	1 cut(s)	1001
Bsp13I	TCCGGA	1 cut(s)	517
Bsp143I	GATC	7 cut(s)	75, 255, 294, 325, 694, 724, 1086
BspACI	CCGC	4 cut(s)	186, 267, 442, 452
BspANI	GGCC	6 cut(s)	5, 90, 380, 455, 490, 572
BspCNI	CTCAG	1 cut(s)	700
BspEI	TCCGGA	1 cut(s)	517
BspLI	GGNNCC	2 cut(s)	489, 495
BspPI	GGATC	1 cut(s)	719
BssECI	CCNNGG	4 cut(s)	301, 564, 728, 764
BssMI	GATC	7 cut(s)	75, 255, 294, 325, 694, 724, 1086
BssNI	GRCGYC	2 cut(s)	264, 801
BssSI	CACGAG	2 cut(s)	356, 368
BssT1I	CCWWGG	1 cut(s)	564
Bst2BI	CACGAG	2 cut(s)	356, 368
Bst2UI	CCWGG	5 cut(s)	271, 729, 765, 816, 907
Bst4CI	ACNGT	5 cut(s)	181, 334, 703, 742, 974
Bst6I	CTCTTC	2 cut(s)	393, 644
BstACI	GRCGYC	2 cut(s)	264, 801
BstC8I	GCNNGC	4 cut(s)	424, 457, 461, 619
BstDEI	CTNAG	1 cut(s)	687
BstDSI	CCRYGG	1 cut(s)	301
BstENI	CCTNNNNNAGG	1 cut(s)	37
BstF5I	GGATG	2 cut(s)	48, 114
BstH2I	RGCGCY	1 cut(s)	659
BstHHI	GCGC	1 cut(s)	658
BstKTI	GATC	7 cut(s)	78, 258, 297, 328, 697, 727, 1089
BstMAI	GTCTC	3 cut(s)	834, 862, 1086
BstMBI	GATC	7 cut(s)	75, 255, 294, 325, 694, 724, 1086
BstMCI	CGRYCG	1 cut(s)	697
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 347, 769, 778
BstNI	CCWGG	5 cut(s)	271, 729, 765, 816, 907
BstNSI	RCATGY	1 cut(s)	847
BstSCI	CCNGG	5 cut(s)	269, 727, 763, 814, 905
BstV1I	GCAGC	1 cut(s)	373
BstX2I	RGATCY	1 cut(s)	724
BstXI	CCANNNNNNTGG	1 cut(s)	764
BstYI	RGATCY	1 cut(s)	724
BsuI	GTATCC	1 cut(s)	962
BsuRI	GGCC	6 cut(s)	5, 90, 380, 455, 490, 572
BtgI	CCRYGG	1 cut(s)	301
BtsCI	GGATG	2 cut(s)	48, 114
BtsI	GCAGTG	1 cut(s)	667
BtsIMutI	CAGTG	1 cut(s)	667
Cac8I	GCNNGC	4 cut(s)	424, 457, 461, 619
CaiI	CAGNNNCTG	1 cut(s)	728
CfoI	GCGC	1 cut(s)	658
Cfr13I	GGNCC	2 cut(s)	488, 977
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	2 cut(s)	418, 439
CspCI	CAANNNNNGTGG	2 cut(s)	549, 584
CviAII	CATG	7 cut(s)	276, 415, 546, 557, 758, 782, 844
CviQI	GTAC	2 cut(s)	418, 439
DdeI	CTNAG	1 cut(s)	687
DpnI	GATC	7 cut(s)	77, 257, 296, 327, 696, 726, 1088
DpnII	GATC	7 cut(s)	75, 255, 294, 325, 694, 724, 1086
DraIII	CACNNNGTG	1 cut(s)	373
EaeI	YGGCCR	3 cut(s)	3, 453, 570
Eam1104I	CTCTTC	2 cut(s)	393, 644
EarI	CTCTTC	2 cut(s)	393, 644
Eco130I	CCWWGG	1 cut(s)	564
Eco147I	AGGCCT	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	977
Eco57I	CTGAAG	2 cut(s)	12, 833
Eco88I	CYCGRG	1 cut(s)	1001
EcoNI	CCTNNNNNAGG	1 cut(s)	37
EcoRII	CCWGG	5 cut(s)	269, 727, 763, 814, 905
EcoT14I	CCWWGG	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	564
FaeI	CATG	7 cut(s)	279, 418, 549, 560, 761, 785, 847
FaqI	GGGAC	2 cut(s)	167, 678
FatI	CATG	7 cut(s)	275, 414, 545, 556, 757, 781, 843
FauI	CCCGC	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	294
Fnu4HI	GCNGC	3 cut(s)	267, 362, 453
FokI	GGATG	2 cut(s)	55, 101
Fsp4HI	GCNGC	3 cut(s)	267, 362, 453
FspBI	CTAG	1 cut(s)	947
GlaI	GCGC	1 cut(s)	657
GluI	GCNGC	3 cut(s)	267, 362, 453
GsuI	CTGGAG	1 cut(s)	837
HaeII	RGCGCY	1 cut(s)	659
HaeIII	GGCC	6 cut(s)	5, 90, 380, 455, 490, 572
HapII	CCGG	4 cut(s)	102, 491, 500, 518
HgaI	GACGC	1 cut(s)	272
HhaI	GCGC	1 cut(s)	658
Hin1I	GRCGYC	2 cut(s)	264, 801
Hin1II	CATG	7 cut(s)	279, 418, 549, 560, 761, 785, 847
Hin6I	GCGC	1 cut(s)	656
HinP1I	GCGC	1 cut(s)	656
HinfI	GANTC	4 cut(s)	68, 98, 282, 467
HpaII	CCGG	4 cut(s)	102, 491, 500, 518
HphI	GGTGA	4 cut(s)	64, 346, 385, 990
Hpy166II	GTNNAC	5 cut(s)	133, 337, 483, 799, 977
Hpy188III	TCNNGA	2 cut(s)	356, 518
Hpy8I	GTNNAC	5 cut(s)	133, 337, 483, 799, 977
Hpy99I	CGWCG	1 cut(s)	718
HpyAV	CCTTC	5 cut(s)	40, 370, 400, 593, 904
HpyCH4III	ACNGT	5 cut(s)	181, 334, 703, 742, 974
HpyCH4IV	ACGT	4 cut(s)	477, 638, 713, 801
HpyCH4V	TGCA	6 cut(s)	20, 545, 560, 751, 772, 883
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 347, 769, 778
HpyF3I	CTNAG	1 cut(s)	687
HpySE526I	ACGT	4 cut(s)	477, 638, 713, 801
Hsp92I	GRCGYC	2 cut(s)	264, 801
Hsp92II	CATG	7 cut(s)	279, 418, 549, 560, 761, 785, 847
HspAI	GCGC	1 cut(s)	656
Kpn2I	TCCGGA	1 cut(s)	517
Ksp22I	TGATCA	1 cut(s)	294
Kzo9I	GATC	7 cut(s)	75, 255, 294, 325, 694, 724, 1086
LmnI	GCTCC	4 cut(s)	198, 493, 511, 631
Lsp1109I	GCAGC	1 cut(s)	373
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	947
MaeII	ACGT	4 cut(s)	477, 638, 713, 801
MaeIII	GTNAC	2 cut(s)	736, 996
MalI	GATC	7 cut(s)	77, 257, 296, 327, 696, 726, 1088
MboI	GATC	7 cut(s)	75, 255, 294, 325, 694, 724, 1086
MboII	GAAGA	6 cut(s)	18, 277, 410, 661, 797, 974
MfeI	CAATTG	1 cut(s)	927
MflI	RGATCY	1 cut(s)	724
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	5 cut(s)	122, 921, 927, 1040, 1051
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	77, 92, 461
MmeI	TCCRAC	3 cut(s)	120, 177, 817
Mox20I	TGGCCA	1 cut(s)	5
MroI	TCCGGA	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	410
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	84, 228, 474, 831
MslI	CAYNNNNRTG	1 cut(s)	786
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	2 cut(s)	11, 459
MspI	CCGG	4 cut(s)	102, 491, 500, 518
MspR9I	CCNGG	5 cut(s)	271, 729, 765, 816, 907
MunI	CAATTG	1 cut(s)	927
MvaI	CCWGG	5 cut(s)	271, 729, 765, 816, 907
MwoI	GCNNNNNNNGC	4 cut(s)	17, 347, 769, 778
NdeII	GATC	7 cut(s)	75, 255, 294, 325, 694, 724, 1086
NlaIII	CATG	7 cut(s)	279, 418, 549, 560, 761, 785, 847
NlaIV	GGNNCC	2 cut(s)	489, 495
NmeAIII	GCCGAG	1 cut(s)	598
NmuCI	GTSAC	2 cut(s)	736, 996
NspI	RCATGY	1 cut(s)	847
PceI	AGGCCT	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	282
PflMI	CCANNNNNTGG	1 cut(s)	276
PfoI	TCCNGGA	2 cut(s)	814, 905
PkrI	GCNGC	3 cut(s)	268, 363, 454
Ple19I	CGATCG	1 cut(s)	697
PleI	GAGTC	3 cut(s)	76, 92, 461
PpsI	GAGTC	3 cut(s)	76, 92, 461
PshBI	ATTAAT	1 cut(s)	831
Psp6I	CCWGG	5 cut(s)	269, 727, 763, 814, 905
PspGI	CCWGG	5 cut(s)	269, 727, 763, 814, 905
PspN4I	GGNNCC	2 cut(s)	489, 495
PspPI	GGNCC	2 cut(s)	488, 977
PstNI	CAGNNNCTG	1 cut(s)	728
PsuI	RGATCY	1 cut(s)	724
PvuI	CGATCG	1 cut(s)	697
PvuII	CAGCTG	2 cut(s)	11, 459
RsaI	GTAC	2 cut(s)	419, 440
RsaNI	GTAC	2 cut(s)	418, 439
RseI	CAYNNNNRTG	1 cut(s)	786
SaqAI	TTAA	4 cut(s)	84, 228, 474, 831
SatI	GCNGC	3 cut(s)	267, 362, 453
Sau3AI	GATC	7 cut(s)	75, 255, 294, 325, 694, 724, 1086
Sau96I	GGNCC	2 cut(s)	488, 977
SchI	GAGTC	3 cut(s)	77, 92, 461
ScrFI	CCNGG	5 cut(s)	271, 729, 765, 816, 907
SfaNI	GCATC	1 cut(s)	114
SinI	GGWCC	1 cut(s)	977
SmiMI	CAYNNNNRTG	1 cut(s)	786
Sse9I	AATT	5 cut(s)	122, 921, 927, 1040, 1051
SseBI	AGGCCT	1 cut(s)	90
SsiI	CCGC	4 cut(s)	186, 267, 442, 452
SspMI	CTAG	1 cut(s)	947
StuI	AGGCCT	1 cut(s)	90
StyD4I	CCNGG	5 cut(s)	269, 727, 763, 814, 905
StyI	CCWWGG	1 cut(s)	564
TaaI	ACNGT	5 cut(s)	181, 334, 703, 742, 974
TaiI	ACGT	4 cut(s)	480, 641, 716, 804
TaqI	TCGA	4 cut(s)	204, 919, 1021, 1089
TasI	AATT	5 cut(s)	122, 921, 927, 1040, 1051
TauI	GCSGC	2 cut(s)	269, 455
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	4 cut(s)	84, 228, 474, 831
Tru9I	TTAA	4 cut(s)	84, 228, 474, 831
TscAI	CASTG	1 cut(s)	674
TseFI	GTSAC	2 cut(s)	736, 996
TseI	GCWGC	1 cut(s)	361
Tsp45I	GTSAC	2 cut(s)	736, 996
TspDTI	ATGAA	3 cut(s)	59, 403, 798
TspGWI	ACGGA	2 cut(s)	307, 1046
TspRI	CASTG	1 cut(s)	674
Van91I	CCANNNNNTGG	1 cut(s)	276
VpaK11BI	GGWCC	1 cut(s)	977
VspI	ATTAAT	1 cut(s)	831
XagI	CCTNNNNNAGG	1 cut(s)	37
XapI	RAATTY	3 cut(s)	921, 1040, 1051
XceI	RCATGY	1 cut(s)	847
XmnI	GAANNNNTTC	1 cut(s)	410
XspI	CTAG	1 cut(s)	947
ZraI	GACGTC	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.