Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006415

Physical Location & Seq

Genomic Coordinates Reverse (-)

30155900 .. 30157990

Gene Structure 2091 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000023928

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGGCGGCTAGTGATGCAACATCAGGATATGACCGAGTGAAGGAAGTGAAAGAATTCGACGAGTCTAAGATCGGAGTTAAAGGCCTCTCCGATGCCGGCATCACTTCCATCCCTCAATTCTTTGTCCACGACCCCGAAACCCTCTCCGACCTCAAACCCTCGTCCAAATACACTGCCGCCACCCTCCCCACTATCAATCTTTCAGACATCAACTCGGTTACTCACCGTGCCGAAATTGTTGAGCAGATCAAGCTCGCCGCGAAAACATGGGGTTTCTTCCAAGTAATCAACCACGGCGTTCCCGTTTCGGTACTTGATGAGACGTTGAAGGCTGTTAAAGCGTTTCACTACCAGCCCCACGAGGTGAAGGCGAAGTACTACAAGCGAGAAGAGGGAAAGGGCGTCATGTATGCCAGCAATAACGACTTGTACCGTACAAAGGCGGCGAGCTGGCATGACTCATTGCAGATCTGGATGGGCCCACAGCGTTCCGAGGTGGAGGAGATCCCGGAGATGTGCAGGAATGAGGTGGTTGCGTGGGATTTTCATGCAACCAAGGTGGGTGAAACTGTGATGGAGTTGCTTTCAGAAGGGTTAGGTTTGGAAGCCGGGAAGTTCAAGGAGCTTACGTTTTCGGATGCGAGGGTGATTGTTGGGCACTGCTATCCCTATTGTCCTCAACTCGATCTCACGGTGGGGATTATATCGCATACTGATCCTGGGATAGTGACAGTTCTTTTGCAGAACCATGTACCTGGGTTGCAAGTTAGGCATCAAAATGAGTGGGTGGATGTCAAGCCTGTGCCTGGAGGTTTGGTTATCAACATTGGAGATCTTCTTCAGATAATCTCCAATGGCGAGTATAAAAGCGTACAACATCGTGTGCTAGCCAACTCTTGGAAGGAATCCCGAATTTCGATTGTCATGTTTTTGAACCAAGGAAAGTGGAAAGAAGATGGTTACTGTGGACCTCTCCCTGAGCTTTTATCATCTGAGAAACCACCAGTCTATCGTAATTTCACAGTGCGAGAATATGTTGAAAATTTCTACAGCAAGGGACTAGAAAGCAAATCTCTTATTGAAAAAATCACAATAAAGAAGCATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

370

Amino Acids

41.47

Weight (kDa)

6.13

Isoelectric Point (pI)

30.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	62 - 160	2.5e-19	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	217 - 312	8.9e-29	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006415)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g19280 FvH4_6g19280 FvH4_6g19281
malus_domestica	MD12G1028400.v1.1 MD12G1028500.v1.1 MD14G1028700.v1.1
prunus_persica	Prupe.7G102900_v2.0.a1 Prupe.7G103000_v2.0.a1
pyrus_communis	pycom12g02720 pycom12g02730 pycom14g02670 pycom14g02680
rosa_chinensis	RchiOBHm_Chr3g0474491
rosa_laevigata	RLG00000023917 RLG00000023927 RLG00000023928
rosa_multiflora	Rmu_sc0001353.1_g000045 Rmu_sc0039676.1_g000001
rosa_roxburghii	Rroxscaffold_6G00407120 Rroxscaffold_6G00407300
rosa_rugosa	Rorug03G0140600 Rorug03G0141100
rosa_samantha	Rh3AG192000 Rh3BG221500 Rh3CG216200 Rh3DG216900
rosa_wichuraiana	Rw3G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	897
AccII	CGCG	1 cut(s)	260
AciI	CCGC	4 cut(s)	5, 177, 258, 443
AclWI	GGATC	2 cut(s)	499, 710
AcsI	RAATTY	3 cut(s)	53, 912, 1042
AcuI	CTGAAG	1 cut(s)	824
AcyI	GRCGYC	1 cut(s)	402
AdeI	CACNNNGTG	1 cut(s)	364
AfaI	GTAC	6 cut(s)	312, 377, 431, 436, 753, 873
AfiI	CCNNNNNNNGG	4 cut(s)	40, 439, 806, 897
AgsI	TTSAA	5 cut(s)	328, 619, 934, 1040, 1082
AjnI	CCWGG	3 cut(s)	718, 754, 805
AluBI	AGCT	4 cut(s)	253, 450, 625, 982
AluI	AGCT	4 cut(s)	253, 450, 625, 982
Alw26I	GTCTC	1 cut(s)	314
AlwI	GGATC	2 cut(s)	499, 710
AoxI	GGCC	2 cut(s)	82, 478
ApaI	GGGCCC	1 cut(s)	482
ApoI	RAATTY	3 cut(s)	53, 912, 1042
ArsI	GACNNNNNNTTYG	2 cut(s)	721, 753
Asp700I	GAANNNNTTC	1 cut(s)	53
AspS9I	GGNCC	3 cut(s)	478, 479, 968
AsuC2I	CCSGG	2 cut(s)	509, 610
AsuHPI	GGTGA	4 cut(s)	215, 376, 575, 658
AsuNHI	GCTAGC	1 cut(s)	886
AvaII	GGWCC	1 cut(s)	968
BaeGI	GKGCMC	2 cut(s)	482, 660
BanII	GRGCYC	1 cut(s)	482
BarI	GAAGNNNNNNTAC	2 cut(s)	359, 391
BauI	CACGAG	1 cut(s)	359
BccI	CCATC	4 cut(s)	116, 469, 568, 950
BceAI	ACGGC	1 cut(s)	310
BciT130I	CCWGG	3 cut(s)	720, 756, 807
BcnI	CCSGG	2 cut(s)	509, 610
BcoDI	GTCTC	1 cut(s)	314
BfaI	CTAG	4 cut(s)	9, 887, 1061, 1108
BfmI	CTRYAG	1 cut(s)	1048
BglII	AGATCT	2 cut(s)	468, 832
BisI	GCNGC	4 cut(s)	6, 177, 258, 444
BlsI	GCNGC	4 cut(s)	7, 178, 259, 445
BmcAI	AGTACT	1 cut(s)	377
Bme1390I	CCNGG	5 cut(s)	509, 610, 720, 756, 807
Bme18I	GGWCC	1 cut(s)	968
BmgT120I	GGNCC	3 cut(s)	478, 479, 968
BmiI	GGNNCC	1 cut(s)	480
BmrFI	CCNGG	5 cut(s)	509, 610, 720, 756, 807
BmsI	GCATC	5 cut(s)	4, 82, 108, 628, 781
BmtI	GCTAGC	1 cut(s)	890
BpmI	CTGGAG	1 cut(s)	828
Bpu10I	CCTNAGC	1 cut(s)	978
BpuMI	CCSGG	2 cut(s)	509, 610
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	6 cut(s)	292, 492, 555, 719, 755, 937
BsaXI	ACNNNNNCTCC	4 cut(s)	614, 644, 801, 831
Bsc4I	CCNNNNNNNGG	4 cut(s)	40, 439, 806, 897
Bse118I	RCCGGY	1 cut(s)	95
Bse1I	ACTGG	1 cut(s)	1004
Bse3DI	GCAATG	1 cut(s)	461
BseBI	CCWGG	3 cut(s)	720, 756, 807
BseDI	CCNNGG	6 cut(s)	292, 492, 555, 719, 755, 937
BseGI	GGATG	4 cut(s)	108, 480, 643, 796
BseLI	CCNNNNNNNGG	4 cut(s)	40, 439, 806, 897
BseMI	GCAATG	1 cut(s)	461
BseMII	CTCAG	2 cut(s)	969, 984
BseNI	ACTGG	1 cut(s)	1004
BseRI	GAGGAG	1 cut(s)	515
BseSI	GKGCMC	2 cut(s)	482, 660
BsgI	GTGCAG	1 cut(s)	538
Bsh1236I	CGCG	1 cut(s)	260
BshFI	GGCC	2 cut(s)	84, 480
BsiSI	CCGG	3 cut(s)	96, 509, 609
BslFI	GGGAC	1 cut(s)	1071
BslI	CCNNNNNNNGG	4 cut(s)	40, 439, 806, 897
BsmAI	GTCTC	1 cut(s)	314
BsmBI	CGTCTC	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	1071
BsnI	GGCC	2 cut(s)	84, 480
Bsp120I	GGGCCC	1 cut(s)	478
Bsp1286I	GDGCHC	2 cut(s)	482, 660
Bsp143I	GATC	7 cut(s)	69, 246, 468, 504, 685, 715, 832
BspACI	CCGC	4 cut(s)	5, 177, 258, 443
BspANI	GGCC	2 cut(s)	84, 480
BspCNI	CTCAG	2 cut(s)	970, 985
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	1 cut(s)	480
BspOI	GCTAGC	1 cut(s)	890
BspPI	GGATC	2 cut(s)	499, 710
BsrDI	GCAATG	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	1004
BssAI	RCCGGY	1 cut(s)	95
BssECI	CCNNGG	6 cut(s)	292, 492, 555, 719, 755, 937
BssMI	GATC	7 cut(s)	69, 246, 468, 504, 685, 715, 832
BssNI	GRCGYC	1 cut(s)	402
BssSI	CACGAG	1 cut(s)	359
BssT1I	CCWWGG	2 cut(s)	555, 937
Bst2BI	CACGAG	1 cut(s)	359
Bst2UI	CCWGG	3 cut(s)	720, 756, 807
Bst4CI	ACNGT	7 cut(s)	227, 434, 571, 694, 733, 965, 1024
Bst6I	CTCTTC	1 cut(s)	384
BstACI	GRCGYC	1 cut(s)	402
BstC8I	GCNNGC	6 cut(s)	97, 255, 415, 448, 452, 888
BstDEI	CTNAG	3 cut(s)	66, 978, 993
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	4 cut(s)	108, 480, 643, 796
BstFNI	CGCG	1 cut(s)	260
BstKTI	GATC	7 cut(s)	72, 249, 471, 507, 688, 718, 835
BstMAI	GTCTC	1 cut(s)	314
BstMBI	GATC	7 cut(s)	69, 246, 468, 504, 685, 715, 832
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 250, 338, 769
BstNI	CCWGG	3 cut(s)	720, 756, 807
BstSCI	CCNGG	5 cut(s)	507, 608, 718, 754, 805
BstSFI	CTRYAG	1 cut(s)	1048
BstSLI	GKGCMC	2 cut(s)	482, 660
BstUI	CGCG	1 cut(s)	260
BstX2I	RGATCY	3 cut(s)	468, 504, 832
BstXI	CCANNNNNNTGG	1 cut(s)	755
BstYI	RGATCY	3 cut(s)	468, 504, 832
BsuRI	GGCC	2 cut(s)	84, 480
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	4 cut(s)	108, 480, 643, 796
BtsI	GCAGTG	2 cut(s)	171, 658
BtsIMutI	CAGTG	3 cut(s)	171, 658, 1029
Cac8I	GCNNGC	6 cut(s)	97, 255, 415, 448, 452, 888
Cfr10I	RCCGGY	1 cut(s)	95
Cfr13I	GGNCC	3 cut(s)	478, 479, 968
CseI	GACGC	1 cut(s)	391
Csp6I	GTAC	6 cut(s)	311, 376, 430, 435, 752, 872
CspCI	CAANNNNNGTGG	6 cut(s)	540, 575, 764, 799, 926, 961
CviAII	CATG	6 cut(s)	267, 406, 455, 548, 749, 925
CviQI	GTAC	6 cut(s)	311, 376, 430, 435, 752, 872
DdeI	CTNAG	3 cut(s)	66, 978, 993
DpnI	GATC	7 cut(s)	71, 248, 470, 506, 687, 717, 834
DpnII	GATC	7 cut(s)	69, 246, 468, 504, 685, 715, 832
DraIII	CACNNNGTG	1 cut(s)	364
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
Eco130I	CCWWGG	2 cut(s)	555, 937
Eco147I	AGGCCT	1 cut(s)	84
Eco24I	GRGCYC	1 cut(s)	482
Eco47I	GGWCC	1 cut(s)	968
Eco57I	CTGAAG	1 cut(s)	824
EcoRI	GAATTC	1 cut(s)	53
EcoRII	CCWGG	3 cut(s)	718, 754, 805
EcoT14I	CCWWGG	2 cut(s)	555, 937
EcoT38I	GRGCYC	1 cut(s)	482
ErhI	CCWWGG	2 cut(s)	555, 937
Esp3I	CGTCTC	1 cut(s)	314
FaeI	CATG	6 cut(s)	270, 409, 458, 551, 752, 928
FaqI	GGGAC	1 cut(s)	1071
FatI	CATG	6 cut(s)	266, 405, 454, 547, 748, 924
Fnu4HI	GCNGC	4 cut(s)	6, 177, 258, 444
FokI	GGATG	4 cut(s)	95, 487, 650, 803
FriOI	GRGCYC	1 cut(s)	482
Fsp4HI	GCNGC	4 cut(s)	6, 177, 258, 444
FspBI	CTAG	4 cut(s)	9, 887, 1061, 1108
GluI	GCNGC	4 cut(s)	6, 177, 258, 444
GsuI	CTGGAG	1 cut(s)	828
HaeIII	GGCC	2 cut(s)	84, 480
HapII	CCGG	3 cut(s)	96, 509, 609
HgaI	GACGC	1 cut(s)	391
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	6 cut(s)	270, 409, 458, 551, 752, 928
HinfI	GANTC	3 cut(s)	62, 458, 905
HpaII	CCGG	3 cut(s)	96, 509, 609
HphI	GGTGA	4 cut(s)	215, 376, 575, 658
Hpy166II	GTNNAC	2 cut(s)	127, 968
Hpy188I	TCNGA	9 cut(s)	74, 91, 148, 205, 493, 589, 637, 843, 994
Hpy188III	TCNNGA	3 cut(s)	24, 472, 909
Hpy8I	GTNNAC	2 cut(s)	127, 968
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	5 cut(s)	34, 322, 361, 584, 895
HpyCH4III	ACNGT	7 cut(s)	227, 434, 571, 694, 733, 965, 1024
HpyCH4IV	ACGT	2 cut(s)	323, 629
HpyCH4V	TGCA	6 cut(s)	17, 466, 519, 551, 742, 763
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 250, 338, 769
HpyF3I	CTNAG	3 cut(s)	66, 978, 993
HpySE526I	ACGT	2 cut(s)	323, 629
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	6 cut(s)	270, 409, 458, 551, 752, 928
KroI	GCCGGC	1 cut(s)	95
KroNI	GCCGGC	1 cut(s)	97
Kzo9I	GATC	7 cut(s)	69, 246, 468, 504, 685, 715, 832
LmnI	GCTCC	1 cut(s)	622
LweI	GCATC	5 cut(s)	4, 82, 108, 628, 781
MaeI	CTAG	4 cut(s)	9, 887, 1061, 1108
MaeII	ACGT	2 cut(s)	323, 629
MaeIII	GTNAC	3 cut(s)	217, 727, 959
MalI	GATC	7 cut(s)	71, 248, 470, 506, 687, 717, 834
MboI	GATC	7 cut(s)	69, 246, 468, 504, 685, 715, 832
MboII	GAAGA	5 cut(s)	268, 401, 827, 830, 965
MflI	RGATCY	3 cut(s)	468, 504, 832
MhlI	GDGCHC	2 cut(s)	482, 660
MluCI	AATT	6 cut(s)	53, 116, 234, 912, 1015, 1042
MlyI	GAGTC	2 cut(s)	71, 452
MmeI	TCCRAC	1 cut(s)	171
MroNI	GCCGGC	1 cut(s)	95
MroXI	GAANNNNTTC	1 cut(s)	53
MseI	TTAA	2 cut(s)	78, 336
MslI	CAYNNNNRTG	1 cut(s)	777
MspI	CCGG	3 cut(s)	96, 509, 609
MspR9I	CCNGG	5 cut(s)	509, 610, 720, 756, 807
MvaI	CCWGG	3 cut(s)	720, 756, 807
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	4 cut(s)	14, 250, 338, 769
NaeI	GCCGGC	1 cut(s)	97
NciI	CCSGG	2 cut(s)	509, 610
NdeII	GATC	7 cut(s)	69, 246, 468, 504, 685, 715, 832
NgoMIV	GCCGGC	1 cut(s)	95
NheI	GCTAGC	1 cut(s)	886
NlaIII	CATG	6 cut(s)	270, 409, 458, 551, 752, 928
NlaIV	GGNNCC	1 cut(s)	480
NmuCI	GTSAC	1 cut(s)	727
PceI	AGGCCT	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	300
PdiI	GCCGGC	1 cut(s)	97
PdmI	GAANNNNTTC	1 cut(s)	53
PfeI	GAWTC	1 cut(s)	905
PflMI	CCANNNNNTGG	1 cut(s)	897
PfoI	TCCNGGA	1 cut(s)	507
PkrI	GCNGC	4 cut(s)	7, 178, 259, 445
PleI	GAGTC	2 cut(s)	70, 452
PpsI	GAGTC	2 cut(s)	70, 452
Psp6I	CCWGG	3 cut(s)	718, 754, 805
PspGI	CCWGG	3 cut(s)	718, 754, 805
PspN4I	GGNNCC	1 cut(s)	480
PspOMI	GGGCCC	1 cut(s)	478
PspPI	GGNCC	3 cut(s)	478, 479, 968
PsuI	RGATCY	3 cut(s)	468, 504, 832
RsaI	GTAC	6 cut(s)	312, 377, 431, 436, 753, 873
RsaNI	GTAC	6 cut(s)	311, 376, 430, 435, 752, 872
RseI	CAYNNNNRTG	1 cut(s)	777
SaqAI	TTAA	2 cut(s)	78, 336
SatI	GCNGC	4 cut(s)	6, 177, 258, 444
Sau3AI	GATC	7 cut(s)	69, 246, 468, 504, 685, 715, 832
Sau96I	GGNCC	3 cut(s)	478, 479, 968
ScaI	AGTACT	1 cut(s)	377
SchI	GAGTC	2 cut(s)	71, 452
ScrFI	CCNGG	5 cut(s)	509, 610, 720, 756, 807
SduI	GDGCHC	2 cut(s)	482, 660
SfaNI	GCATC	5 cut(s)	4, 82, 108, 628, 781
SfcI	CTRYAG	1 cut(s)	1048
SinI	GGWCC	1 cut(s)	968
SmiMI	CAYNNNNRTG	1 cut(s)	777
Sse9I	AATT	6 cut(s)	53, 116, 234, 912, 1015, 1042
SseBI	AGGCCT	1 cut(s)	84
SsiI	CCGC	4 cut(s)	5, 177, 258, 443
SspMI	CTAG	4 cut(s)	9, 887, 1061, 1108
StuI	AGGCCT	1 cut(s)	84
StyD4I	CCNGG	5 cut(s)	507, 608, 718, 754, 805
StyI	CCWWGG	2 cut(s)	555, 937
TaaI	ACNGT	7 cut(s)	227, 434, 571, 694, 733, 965, 1024
TaiI	ACGT	2 cut(s)	326, 632
TaqI	TCGA	3 cut(s)	57, 684, 917
TaqII	GACCGA	1 cut(s)	48
TasI	AATT	6 cut(s)	53, 116, 234, 912, 1015, 1042
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	4 cut(s)	8, 179, 260, 446
TfiI	GAWTC	1 cut(s)	905
Tru1I	TTAA	2 cut(s)	78, 336
Tru9I	TTAA	2 cut(s)	78, 336
TscAI	CASTG	3 cut(s)	178, 665, 1029
TseFI	GTSAC	1 cut(s)	727
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	1 cut(s)	536
TspRI	CASTG	3 cut(s)	178, 665, 1029
Van91I	CCANNNNNTGG	1 cut(s)	897
VpaK11BI	GGWCC	1 cut(s)	968
XapI	RAATTY	3 cut(s)	53, 912, 1042
XmnI	GAANNNNTTC	1 cut(s)	53
XspI	CTAG	4 cut(s)	9, 887, 1061, 1108
ZrmI	AGTACT	1 cut(s)	377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.